Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524442 |
| gene name | LOC106613910 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 69239531 ~ 69350551 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| probable voltage-dependent R-type calcium channel subunit alpha-1E isoform X2 |
| id | description |
|---|---|
| K04852 | CACNA1E, CAV2.3; voltage-dependent calcium channel R type alpha-1E |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036978240.1 | False | 6831 | mRNA | 0.55 | 46 | 69239531 | 69350421 |
| XM_036978239.1 | False | 6958 | mRNA | 0.54 | 46 | 69239531 | 69350548 |
| XM_036978236.1 | False | 7097 | mRNA | 0.54 | 46 | 69239531 | 69350549 |
| XM_036978238.1 | False | 7001 | mRNA | 0.54 | 47 | 69239531 | 69350549 |
| XM_036978234.1 | False | 7140 | mRNA | 0.54 | 47 | 69239531 | 69350550 |
| XM_036978237.1 | False | 7011 | mRNA | 0.54 | 46 | 69239531 | 69350550 |
| XM_036978235.1 | True | 7141 | mRNA | 0.54 | 47 | 69239531 | 69350551 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:dkey-21p1.3 | LOC106613908 | coding | downstream | 10862 | 69198487 ~ 69228669 (-) |
| soat1 | soat1 | coding | downstream | 41272 | 69187862 ~ 69198259 (-) |
| LOC110524437 | abl2 | coding | downstream | 52270 | 69143474 ~ 69187261 (-) |
| LOC110524436 | LOC106613904 | coding | downstream | 104440 | 69086959 ~ 69135091 (-) |
| LOC118964770 | NA | coding | downstream | 154266 | 69085182 ~ 69085265 (-) |
| LOC110524447 | LOC106613914 | coding | upstream | 201252 | 69551803 ~ 69619075 (-) |
| LOC110524449 | LOC106613916 | coding | upstream | 354320 | 69704871 ~ 69714330 (-) |
| LOC110524450 | k0841 | coding | upstream | 364731 | 69715282 ~ 69728426 (-) |
| LOC110524451 | LOC106613917 | coding | upstream | 387812 | 69738363 ~ 69743354 (-) |
| LOC110524454 | rfc4 | coding | upstream | 394035 | 69744586 ~ 69751448 (-) |
| G432448 | NA | non-coding | downstream | 89705 | 69147630 ~ 69149826 (-) |
| LOC110522990 | LOC106613902 | non-coding | downstream | 185647 | 69050540 ~ 69054216 (-) |
| G432389 | NA | non-coding | downstream | 411881 | 68826974 ~ 68827650 (-) |
| G432377 | NA | non-coding | downstream | 433211 | 68806014 ~ 68806320 (-) |
| G433669 | NA | non-coding | upstream | 118492 | 69469043 ~ 69469372 (-) |
| G433670 | cep350 | non-coding | upstream | 119213 | 69469764 ~ 69470321 (-) |
| G433680 | NA | non-coding | upstream | 133786 | 69484337 ~ 69484789 (-) |
| G433682 | NA | non-coding | upstream | 135643 | 69486194 ~ 69486404 (-) |
| G433683 | LOC106613912 | non-coding | upstream | 135855 | 69486406 ~ 69524790 (-) |
| G432513 | NA | other | downstream | 233425 | 69004619 ~ 69006106 (-) |
| G432338 | NA | other | downstream | 484474 | 68748558 ~ 68755057 (-) |
| G432310 | LOC106613894 | other | downstream | 532083 | 68699821 ~ 68707448 (-) |
| bend5 | LOC106584333 | other | downstream | 886786 | 68331871 ~ 68352828 (-) |
| lrrc7 | LOC106613881 | other | downstream | 1421407 | 67810595 ~ 67983549 (-) |
| G435234 | NA | other | upstream | 1640341 | 70990892 ~ 70991798 (-) |
| G435176 | NA | other | upstream | 1717474 | 71068025 ~ 71068887 (-) |
| LOC110524478 | LOC106613944 | other | upstream | 1878631 | 71226012 ~ 71242283 (-) |
| il23r | LOC106613945 | other | upstream | 1935839 | 71285725 ~ 71308015 (-) |
