LOC110524449 (LOC106613916)


Basic Information

Item Value
gene id LOC110524449
gene name LOC106613916
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69704871 ~ 69714330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604088.2
CACTGATCAACTGTGCTTCCGGATGCCAAGATTGAGCAAGACTGACTGCACAGCTGCCGCCGAATTTAAAGAGACAGGCAATCGTTAATTTAAAATAACATAATCAGCAACCATTGTCTCAAAGCTTGTTTTAAAAGAGGCTTCACTCTGACATAGCGCACCAGTAGTAGTCACTCGTTGGACCAATAATGGCGTTCATTCAAAGTCAAATCGAGTAGTAGCTTATCATAGCTAAGTTACCTGGTTGGATTTTCCCTCTTGCttgctggctaacgttagccaaatAAGCGTTGCTAGCTGGTTTCCCGACGAAGAGCTAGATTTGTCGGCTAGCCAACAACCATATACTGAAGCTTATAATCAAGTAGTAGTGGCCACTATCGCCGGGATAATGGCGAAAATTCAGGCACACAGCAACCCGAAACAAATAAACCAAATTCAAGACAAGGCCTATGTTGTACAAAAACAAGTGCAACAACAGCACTTTCAGAAACTGAAGGTTGAAGATGCCCTATCATACCTGGACCAAGTGAAAATACGATTTGGGAATGACCCTGGAATATATAACAAATTTCTTGACATAATGAAAGAATTTAAATCACAAAGCATTGACACACCAGGCGTTATAAACCGTGTGTCTCAGCTCTTCCACGGACACCCGGACCTTGTCTTAGGATTCAATGCCTTCCTGCCCCCAGGCTATCGGATAGAGATTCCCAAGAATGGAGTGGTTTTCCTTCAGTCACCTTTCTCTTCCCAGGTCTCCCCAGGCCAGGGGAAGAGTATTGCAAGCCCTGCTGTGAGTGCCACTGGCTCATCTGTTGCTGAAGCTGGGTCTGCCCAAAGTGAAGCTGTGGCATCGCCTGAAAGCATCTCCTCATCCTCTGGACCCCCAGAGCCCCCCAGTAGACTGTCCTTGCCACTCCCCAGCAGAGAGAGCCAGTCCCAGCCACAGTCCTCCTCGGTGTCCCCCCCTGCCTCGGAGCCCAGCCCAGTAGAATTTGACAGTGCTATCAGCTATGTCAACAAGATCAAAAACCGCTTCTTAGACCATCCAGAGATCTACAGATCCTTCCTTGAGATACTACACACTTACCAGAAGGAGCAGCTTGAAGTCAAGGAGAGCCGGGGTCGTAGTAGTAGTGGGATGACAGAGGATGAAGTTTTCTCAAAAGTGGCCAGCCTCTTCAAAGGCCAAGAGGACTTACTGGCTGAGTTTGGACAGTTCTTACCAGATGCTAAGAGATCATTGTTCACTGGCAGCTCCCTGACAGGGAAAGACCAACTGAAGAGGGCAGAGGATGAGGATATGAGCAAACATAGCAAGAAGAGATCAAGGCCCATGCTGCTGCCGCATATGACGCCACTGCTCAAGAAAAAGATGAAGTTTTCGTGCTCCCAAGACCAGTCCTTTGCCTCAGTTGGGAAGCATGGAGTCTTGCGGGAGTTCACCTTTTTTGACAAGGTTCGACGTTTCTTCAAGAGCCAGGAGGTGTATGAAAACTTCCTCCGCTGCATTGCTTTGTTTAACCAGGAAGTGGTTTCGGGAGCAGAGCTGCTGCAGCTTGTCACCCCCTTTTTGGGGAAGTTTCCAGAGCTATATACCCAGTTCAAGTCATTTCTGGGTGACAAGGAGCTCTCTCATTCAATGTCGGGCCTGTCGGACCGCTACATGGAAGGGGGTGGGGGCAGGGAGGTCGACTATGCATCTTGCAAGCGCCTGGGATCCAGCTACAGAGCACTACCCAAGACTTACCAGCAGCCCAAGTGCAGCGGCCGCACTGCCATCTGCAAAGAGGTATTGAATGACACCTGGGTTTCCTTCCCCTCATGGTCCGAGGACTCTACGTTTGCAAGCTCTAAGAAAACCCCATATGAGGAGCAGCTTCATCGCTGTGAGGATGAGAGGTTTGAATTGGATGTGGTCCTGGAGACAAACCTGGCCACCATCCGGGTCCTGGAGAGTGTTCAGAAGAAGCTGTCCCGTCTGTCGCCCGAGGACCAGGACCGCTTCCGCCTGGACGACTGTCTGGGTGGCACCTCTGAGGTCATCCAGCGCCGAGCCGTCTACCGTATCTATGGCGACAAGGCCCCTGAGATTATAGAGGGTCTGAAGAGGAGCCCTGCTACTGCTGTGCCTGTGGTGCTCAAGAGATTGAAAGcgaaggaggaggagtggagagaagccCAGCAGGGCTTCAACAAGATCTGGAGGGAGCAGTATGAGAAGGCCTACCTCAAGTCCCTGGACCACCAGGGGGTCAACTTCAAGCAAAATGACATGAAGGCCCTCCGATCCAAGAGCCTGCTCAATGAGATTGAAAGTGTTTATGATGAGCGTCAGGAGCAGAGCACAGAGGAGGGGGGCGTGGGCCAACAGGGGCGTGATGGGAGCAGTGCGGCAGTGGTCAGCGAGCCACACATGGTGTTCACCTATGAGGACAAGCAGATCCTGGAGGACGCCGCCTCTCTCATCATCTACCACGTCAAACGCCAGCCCACCATCCACAAGGATGACAAGGACCATATCAAGCGCATCATCCAGCACTTTGTCCCTGACCTCTTCTTCTCCCGCCGCGGCGAGCTCAGTGAGACGGAGGAGTGGACGGACGAGGAggcagaggtggaggagggaggagaccgGGGAGGTGGTGGTAGCAGCAGCATAACAGGAGCAGTAGCAGCACCAGTTGGCCAGCCGCAGCAACAGCAACTGAACGGGGAGTCGAGGCGGCGGCGCTGCACCTCTCCTCAGACAGCGGAGCTGGGTGGAGCCTCTCACAGCCTGGCCccagaaggaggggagaaggtggACCTGAGAGACCCTGAGGCAGAGCACCAGAAGGAGCTGGACGGAGTCTACAACCTGTTTTTCGTCAACAACAACTGGTACTTCTTCCTGCGGCTGCACCAGACCCTGTGCCAGCGGCTGCTGAGGGTGTACCGGCAGGCAGAACGGCAGCTGCTGGAGCACCGGGCCGAGCAGAACCGTGAGAGGCTGCTGATGGCAGAGGGTCGCAGGGATAAGGCCAGCGACCTGGCCATGGAGCTCCGCCTCAAACAGCCAAGTGAGGTGGAACTGGAGGAGTACTACCCAGCGTTTTTGGACATGGTGCGCAGTCTTCTGGATGGGAACCTGGAGTCTACGCAGTATGAGGACACACTGCGGGAAATGTTCACCATCCACGCCTACATCGGCTTCACCATCGACAAGCTCATCCAGAATACCATTAGACAGCTGCAGCACCTGGTGAGTGACGAGGTGTGCCTGCAGGTGGCTGAGCTGTACCTGGCTGAGAGGAAGAGGGGTGCAGCGGGGGGGAACCTGTCGTCCCAGTGTGTGAGAGCAGCCTGGGAGACCAGCTACCAGTGGAAGTCTGAGAGGGTCATGGCTGAGGAGAACTGCTTCAAGGTGTTGTTCATTCAGAACAAAGGCCAGGTCACCTTGACCATTGAGCTGCTGGACACAGAGGAGGCCCAGGCCGATGATCCCCTGGATGTGCAGTGCCTGTCCAGCTATATGGAACAGTTTGTAGGGACAGAGTCAACGCTTTGCTCGCAGACTGAAGGCTACTTTTTCAAACCTGTATTTTTGCCCAGGAACCTGAGGCACTTCAGACGCTGGCAGGTGCGCCAGGTGGAGGCGATGCGCTGCAGACGGGAGTGGCACAGACAGCTGGGTGTGGAGAGTGCTGGCAGTCTGGACTGCCGCTTCAAACTCAACACCCACAAGATGGTGTTCGTCATGAACTCTGAGGACTACATGTACCGGCGGGGAGCGCTGGTCAAAGCCAGGAAGtcccagcACAGGGTGGCTGTGAAACAGCACGAGCGCTTTGACAAGTGGCACCAGGGCTGGCTGGCAGAGCACGTGCCTCCGGCGGCCGATCGCTCGGTCCACGACTGGCTGATGGGTGAGGAGGCAGAGGACATGATCCCCTGCAAGACCACCTGCCTCAACACACAGGTCAAAGGCCTGCCTGTCAACAGATACCAGGTGCATTACAGTAGGAAACCTCCCTCTCCCTAGAGGCTGGAtccacacacaatctctctcacacacacacacacctgacctactacacacacagagagagactggttggACTTTGCAGACGTGTTGAGACTGAGATTGGGGGATCCAGTGCGGAACACAGGAGCTCTTCATCCGATTCACCCATGCTGCTTCTCTGTTCACACAGTCAGCAGTGCAAGCAGAGGGTCGTGAGAATAAAATCATTTTTTGTTTCAGAAATGTGaatgtctctctttttttttaagtCCATTGTAGTTTTTAGCTTCTGAAGCCAGAgggccttttgtttgtttttgtatatGTTTATACTGAAGTACTGAGAAATGGTTAAAAATGTGTTTCATGCTCCACAATGTCTTTTGTACAGTAAGCTCAACTTCAGTAATTTGATTACTGTATGTGCATATACAACTGTACACATTTTATATATGCATTTACATGAATATGATGAAAAATGTAAAATTACATGATCTTAGTGTTTTGCAGGCAGCCATTTCTTGatatttactttttttttctgGTCATTTTTATTTTTCTTGTGACTAAACAGATGATTGATTGCCAGTGTGACAAGTCCTCACAATTGATTTAACTTTGTACATTTTATGGAACATCAGAATTATGTATCATATTCAAATCTTTACTTTGGTTTGTCATTTTGCATACTAAAATAAACTATCagtgttaaaataatgtataacATTTATCCTGTATCAGTTATCATGAATAAACAACTGAGTTGTGAACTtcttaaa
>XM_021604087.2
GCACTGATCAACTGTGCTTCCGGATGCCAAGATTGAGCAAGACTGACTGCACAGCTGCCGCCGAATTTAAAGAGACAGGCAATCGTTAATTTAAAATAACATAATCAGCAACCATTGTCTCAAAGCTTGTTTTAAAAGAGGCTTCACTCTGACATAGCGCACCAGTAGTAGTCACTCGTTGGACCAATAATGGCGTTCATTCAAAGTCAAATCGAGTAGTAGCTTATCATAGCTAAGTTACCTGGTTGGATTTTCCCTCTTGCttgctggctaacgttagccaaatAAGCGTTGCTAGCTGGTTTCCCGACGAAGAGCTAGATTTGTCGGCTAGCCAACAACCATATACTGAAGCTTATAATCAAGTAGTAGTGGCCACTATCGCCGGGATAATGGCGAAAATTCAGGCACACAGCAACCCGAAACAAATAAACCAAATTCAAGACAAGGCCTATGTTGTACAAAAACAAGTGCAACAACAGCACTTTCAGAAACTGAAGGTTGAAGATGCCCTATCATACCTGGACCAAGTGAAAATACGATTTGGGAATGACCCTGGAATATATAACAAATTTCTTGACATAATGAAAGAATTTAAATCACAAAGCATTGACACACCAGGCGTTATAAACCGTGTGTCTCAGCTCTTCCACGGACACCCGGACCTTGTCTTAGGATTCAATGCCTTCCTGCCCCCAGGCTATCGGATAGAGATTCCCAAGAATGGAGTGGTTTTCCTTCAGTCACCTTTCTCTTCCCAGGTCTCCCCAGGCCAGGGGAAGAGTATTGCAAGCCCTGCTGTGAGTGCCACTGGCTCATCTGTTGCTGAAGCTGGGTCTGCCCAAAGTGAAGCTGTGGCATCGCCTGAAAGCATCTCCTCATCCTCTGGACCCCCAGAGCCCCCCAGTAGACTGTCCTTGCCACTCCCCAGCAGAGAGAGCCAGTCCCAGCCACAGTCCTCCTCGGTGTCCCCCCCTGCCTCGGAGCCCAGCCCAGTAGAATTTGACAGTGCTATCAGCTATGTCAACAAGATCAAAAACCGCTTCTTAGACCATCCAGAGATCTACAGATCCTTCCTTGAGATACTACACACTTACCAGGTACACTGTGTCATCAATATGAAGGAGCAGCTTGAAGTCAAGGAGAGCCGGGGTCGTAGTAGTAGTGGGATGACAGAGGATGAAGTTTTCTCAAAAGTGGCCAGCCTCTTCAAAGGCCAAGAGGACTTACTGGCTGAGTTTGGACAGTTCTTACCAGATGCTAAGAGATCATTGTTCACTGGCAGCTCCCTGACAGGGAAAGACCAACTGAAGAGGGCAGAGGATGAGGATATGAGCAAACATAGCAAGAAGAGATCAAGGCCCATGCTGCTGCCGCATATGACGCCACTGCTCAAGAAAAAGATGAAGTTTTCGTGCTCCCAAGACCAGTCCTTTGCCTCAGTTGGGAAGCATGGAGTCTTGCGGGAGTTCACCTTTTTTGACAAGGTTCGACGTTTCTTCAAGAGCCAGGAGGTGTATGAAAACTTCCTCCGCTGCATTGCTTTGTTTAACCAGGAAGTGGTTTCGGGAGCAGAGCTGCTGCAGCTTGTCACCCCCTTTTTGGGGAAGTTTCCAGAGCTATATACCCAGTTCAAGTCATTTCTGGGTGACAAGGAGCTCTCTCATTCAATGTCGGGCCTGTCGGACCGCTACATGGAAGGGGGTGGGGGCAGGGAGGTCGACTATGCATCTTGCAAGCGCCTGGGATCCAGCTACAGAGCACTACCCAAGACTTACCAGCAGCCCAAGTGCAGCGGCCGCACTGCCATCTGCAAAGAGGTATTGAATGACACCTGGGTTTCCTTCCCCTCATGGTCCGAGGACTCTACGTTTGCAAGCTCTAAGAAAACCCCATATGAGGAGCAGCTTCATCGCTGTGAGGATGAGAGGTTTGAATTGGATGTGGTCCTGGAGACAAACCTGGCCACCATCCGGGTCCTGGAGAGTGTTCAGAAGAAGCTGTCCCGTCTGTCGCCCGAGGACCAGGACCGCTTCCGCCTGGACGACTGTCTGGGTGGCACCTCTGAGGTCATCCAGCGCCGAGCCGTCTACCGTATCTATGGCGACAAGGCCCCTGAGATTATAGAGGGTCTGAAGAGGAGCCCTGCTACTGCTGTGCCTGTGGTGCTCAAGAGATTGAAAGcgaaggaggaggagtggagagaagccCAGCAGGGCTTCAACAAGATCTGGAGGGAGCAGTATGAGAAGGCCTACCTCAAGTCCCTGGACCACCAGGGGGTCAACTTCAAGCAAAATGACATGAAGGCCCTCCGATCCAAGAGCCTGCTCAATGAGATTGAAAGTGTTTATGATGAGCGTCAGGAGCAGAGCACAGAGGAGGGGGGCGTGGGCCAACAGGGGCGTGATGGGAGCAGTGCGGCAGTGGTCAGCGAGCCACACATGGTGTTCACCTATGAGGACAAGCAGATCCTGGAGGACGCCGCCTCTCTCATCATCTACCACGTCAAACGCCAGCCCACCATCCACAAGGATGACAAGGACCATATCAAGCGCATCATCCAGCACTTTGTCCCTGACCTCTTCTTCTCCCGCCGCGGCGAGCTCAGTGAGACGGAGGAGTGGACGGACGAGGAggcagaggtggaggagggaggagaccgGGGAGGTGGTGGTAGCAGCAGCATAACAGGAGCAGTAGCAGCACCAGTTGGCCAGCCGCAGCAACAGCAACTGAACGGGGAGTCGAGGCGGCGGCGCTGCACCTCTCCTCAGACAGCGGAGCTGGGTGGAGCCTCTCACAGCCTGGCCccagaaggaggggagaaggtggACCTGAGAGACCCTGAGGCAGAGCACCAGAAGGAGCTGGACGGAGTCTACAACCTGTTTTTCGTCAACAACAACTGGTACTTCTTCCTGCGGCTGCACCAGACCCTGTGCCAGCGGCTGCTGAGGGTGTACCGGCAGGCAGAACGGCAGCTGCTGGAGCACCGGGCCGAGCAGAACCGTGAGAGGCTGCTGATGGCAGAGGGTCGCAGGGATAAGGCCAGCGACCTGGCCATGGAGCTCCGCCTCAAACAGCCAAGTGAGGTGGAACTGGAGGAGTACTACCCAGCGTTTTTGGACATGGTGCGCAGTCTTCTGGATGGGAACCTGGAGTCTACGCAGTATGAGGACACACTGCGGGAAATGTTCACCATCCACGCCTACATCGGCTTCACCATCGACAAGCTCATCCAGAATACCATTAGACAGCTGCAGCACCTGGTGAGTGACGAGGTGTGCCTGCAGGTGGCTGAGCTGTACCTGGCTGAGAGGAAGAGGGGTGCAGCGGGGGGGAACCTGTCGTCCCAGTGTGTGAGAGCAGCCTGGGAGACCAGCTACCAGTGGAAGTCTGAGAGGGTCATGGCTGAGGAGAACTGCTTCAAGGTGTTGTTCATTCAGAACAAAGGCCAGGTCACCTTGACCATTGAGCTGCTGGACACAGAGGAGGCCCAGGCCGATGATCCCCTGGATGTGCAGTGCCTGTCCAGCTATATGGAACAGTTTGTAGGGACAGAGTCAACGCTTTGCTCGCAGACTGAAGGCTACTTTTTCAAACCTGTATTTTTGCCCAGGAACCTGAGGCACTTCAGACGCTGGCAGGTGCGCCAGGTGGAGGCGATGCGCTGCAGACGGGAGTGGCACAGACAGCTGGGTGTGGAGAGTGCTGGCAGTCTGGACTGCCGCTTCAAACTCAACACCCACAAGATGGTGTTCGTCATGAACTCTGAGGACTACATGTACCGGCGGGGAGCGCTGGTCAAAGCCAGGAAGtcccagcACAGGGTGGCTGTGAAACAGCACGAGCGCTTTGACAAGTGGCACCAGGGCTGGCTGGCAGAGCACGTGCCTCCGGCGGCCGATCGCTCGGTCCACGACTGGCTGATGGGTGAGGAGGCAGAGGACATGATCCCCTGCAAGACCACCTGCCTCAACACACAGGTCAAAGGCCTGCCTGTCAACAGATACCAGGTGCATTACAGTAGGAAACCTCCCTCTCCCTAGAGGCTGGAtccacacacaatctctctcacacacacacacacctgacctactacacacacagagagagactggttggACTTTGCAGACGTGTTGAGACTGAGATTGGGGGATCCAGTGCGGAACACAGGAGCTCTTCATCCGATTCACCCATGCTGCTTCTCTGTTCACACAGTCAGCAGTGCAAGCAGAGGGTCGTGAGAATAAAATCATTTTTTGTTTCAGAAATGTGaatgtctctctttttttttaagtCCATTGTAGTTTTTAGCTTCTGAAGCCAGAgggccttttgtttgtttttgtatatGTTTATACTGAAGTACTGAGAAATGGTTAAAAATGTGTTTCATGCTCCACAATGTCTTTTGTACAGTAAGCTCAACTTCAGTAATTTGATTACTGTATGTGCATATACAACTGTACACATTTTATATATGCATTTACATGAATATGATGAAAAATGTAAAATTACATGATCTTAGTGTTTTGCAGGCAGCCATTTCTTGatatttactttttttttctgGTCATTTTTATTTTTCTTGTGACTAAACAGATGATTGATTGCCAGTGTGACAAGTCCTCACAATTGATTTAACTTTGTACATTTTATGGAACATCAGAATTATGTATCATATTCAAATCTTTACTTTGGTTTGTCATTTTGCATACTAAAATAAACTATCagtgttaaaataatgtataacATTTATCCTGTATCAGTTATCATGAATAAACAACTGAGTTGTGAACTtcttaaa

Function

NR:

description
paired amphipathic helix protein Sin3b-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K23213 SIN3B; paired amphipathic helix protein Sin3b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604088.2 False 4791 mRNA 0.51 19 69704871 69714329
XM_021604087.2 True 4813 mRNA 0.51 19 69704871 69714330
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110524447 LOC106613914 coding downstream 85796 69551803 ~ 69619075 (-)
LOC110524442 LOC106613910 coding downstream 354320 69239531 ~ 69350551 (-)
si:dkey-21p1.3 LOC106613908 coding downstream 476202 69198487 ~ 69228669 (-)
soat1 soat1 coding downstream 506612 69187862 ~ 69198259 (-)
LOC110524437 abl2 coding downstream 517610 69143474 ~ 69187261 (-)
LOC110524450 k0841 coding upstream 952 69715282 ~ 69728426 (-)
LOC110524451 LOC106613917 coding upstream 24033 69738363 ~ 69743354 (-)
LOC110524454 rfc4 coding upstream 30256 69744586 ~ 69751448 (-)
LOC110524457 LOC106584309 coding upstream 110980 69825310 ~ 69834151 (-)
LOC110522884 LOC106604339 coding upstream 205827 69920157 ~ 69921094 (-)
G433735 NA non-coding downstream 1580 69656009 ~ 69703291 (-)
G433725 NA non-coding downstream 148380 69555019 ~ 69556491 (-)
G433683 LOC106613912 non-coding downstream 180081 69486406 ~ 69524790 (-)
G433697 NA non-coding downstream 199945 69502514 ~ 69504926 (-)
G433688 NA non-coding downstream 215113 69489450 ~ 69489758 (-)
G433814 NA non-coding upstream 15225 69729555 ~ 69729792 (-)
G433818 NA non-coding upstream 18625 69732955 ~ 69733165 (-)
G433820 NA non-coding upstream 22614 69736944 ~ 69737409 (-)
G433889 NA non-coding upstream 153003 69867333 ~ 69886159 (-)
G433918 ect2 non-coding upstream 183599 69897929 ~ 69899326 (-)
G432513 NA other downstream 698765 69004619 ~ 69006106 (-)
G432338 NA other downstream 949814 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 997423 68699821 ~ 68707448 (-)
bend5 LOC106584333 other downstream 1352126 68331871 ~ 68352828 (-)
G435234 NA other upstream 1276562 70990892 ~ 70991798 (-)
G435176 NA other upstream 1353695 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 1514852 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 1572060 71285725 ~ 71308015 (-)
G436172 LOC100136696 other upstream 2326632 72040962 ~ 72121697 (-)

Expression

LOC110524449(LOC106613916) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110524449(LOC106613916) Expression in each Bioproject

Bar chart with 21 bars.
LOC110524449(LOC106613916) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network