LOC110522884 (LOC106604339)


Basic Information

Item Value
gene id LOC110522884
gene name LOC106604339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69920157 ~ 69921094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473388.2
gtgtgtgtttgtcgccacacagTACTGTTTTGGTTTGGTTATGGCACATATTCgtgtattgtttattttatttgatagtgttcagtgcttttcttattaaaatcgtcatgaacacttaccacgccgcatcttggtgcGAGCCTTACTCCTCTTCAAACGAAGAGGAAATCTGTCGTTACAATTTCAACAGTCCCTGAAGGACAATACAGAAGAGGCACAAAGGGGACTCGAGACCACAGCAGCGATCCTGCTTTTGCCCAACCTCTTCAATGAGGACCCGAGTGGCCTTTATGTCCGTGACAAGATTTCACCGCTCCCCACTCCTTTACTGCACATCGACGGAAATCCATTTCACCATGAGAGTGAAATCCCGCTGGCCTTTGATGGGGAGAACATGCACGCCCTAGAGGACATTCCCATGGGACTTGTGGCTCTGCTAGGGCTTTTATTTCCCAAATATTTCTGAGAAACACTTATATTCTTAAGTTACTGTGTTCTGGGGATAAGAGATGTTGGGGTGAAGTTACCAGTGCCGGTCATAAAGATGGCAAACTTCCTAACATAACTAAGTGGTTGTTGGGCAAGTGGTTtaggacacagacacactcaagcaaaaaaaatctgtatttaGCATTAAGTCTCTTGTTAGTTTACCTATGCTTCATTTTTAATGTATCTTGTTTTTATtgtacatttttaaataaaaagttGTAATGAAAAGCA

Function

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473388.2 True 723 mRNA 0.42 3 69920157 69921094

Neighbor

gene id symbol gene type direction distance location
LOC110524457 LOC106584309 coding downstream 86006 69825310 ~ 69834151 (-)
LOC110524454 rfc4 coding downstream 168709 69744586 ~ 69751448 (-)
LOC110524451 LOC106613917 coding downstream 176803 69738363 ~ 69743354 (-)
LOC110524450 k0841 coding downstream 191731 69715282 ~ 69728426 (-)
LOC110524449 LOC106613916 coding downstream 205827 69704871 ~ 69714330 (-)
LOC110524459 spata16 coding upstream 29110 69950204 ~ 70004717 (-)
LOC110524463 tbl1xr1 coding upstream 915721 70836815 ~ 70870397 (-)
LOC110524467 zmat3 coding upstream 1100578 71021672 ~ 71033577 (-)
LOC110524468 LOC106613935 coding upstream 1124948 71046042 ~ 71057781 (-)
LOC110524470 LOC106613933 coding upstream 1148271 71069365 ~ 71106201 (-)
G433918 ect2 non-coding downstream 20831 69897929 ~ 69899326 (-)
G433889 NA non-coding downstream 33998 69867333 ~ 69886159 (-)
G433820 NA non-coding downstream 182748 69736944 ~ 69737409 (-)
G433818 NA non-coding downstream 186992 69732955 ~ 69733165 (-)
G433814 NA non-coding downstream 190365 69729555 ~ 69729792 (-)
G433938 NA non-coding upstream 3567 69924661 ~ 69924861 (-)
G433940 NA non-coding upstream 6050 69927144 ~ 69991777 (-)
G433950 NA non-coding upstream 18500 69939594 ~ 69965405 (-)
G434011 NA non-coding upstream 113837 70034931 ~ 70035234 (-)
G433683 LOC106613912 other downstream 395367 69486406 ~ 69524790 (-)
G432513 NA other downstream 914051 69004619 ~ 69006106 (-)
G432338 NA other downstream 1165100 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 1212709 68699821 ~ 68707448 (-)
bend5 LOC106584333 other downstream 1567412 68331871 ~ 68352828 (-)
G435234 NA other upstream 1069798 70990892 ~ 70991798 (-)
G435176 NA other upstream 1146931 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 1308088 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 1365296 71285725 ~ 71308015 (-)
G436172 LOC100136696 other upstream 2119868 72040962 ~ 72121697 (-)

Expression


Co-expression Network