LOC110524459 (spata16)


Basic Information

Item Value
gene id LOC110524459
gene name spata16
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69950204 ~ 70004717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979053.1
CTTTGAGAAACGGatctaatcatcaagcccttgacacGTCGAATCAGCTGTTTTGTCCGTGTCTACAACaaacatgtaggcctactgttgGTTGTActcgaggaccggagttggggAAACTCTAGTCTGGATGCCACTTTCGCCATACCCAAAAACTGTAATCAAGTTGCAGCAGACAGTGTACATTTCACCTAAGTCTATTGGTTCATGTTGATATACTGGAATCAAATACGTGTTTTATGAACaggcgtgttttttttttgctgcaCAAATTTGCCGCGAATGATAAAGCATGGAATCCAAACACCTGAAGAACGCTTTCAAATGGTCTAACAGAATGTTGTTTTACGAACCGAATGCAGATGATCGAATGCATACAATCCACATAACAAGCAAGCAAAATATAGGTGCATCATGGTTCAATCTGCAGGAGTTCCACAGCTTTCAGATAATCAGGCTCCGCCGGGGAGACCCAGCTCGGCTACAGAGACAGAAGTTAATCGGATTCACAATACCCAGGCACCACCACCACCCAAGGAAAGTGGCCCAAATAAGAGGAGGAAAGCGAGAGtgaggggaaacagcaccaggcCCAAGAAGAGAATGACGGACAGCAGGGGTGTTAGTGATAGACCACTAGTGGAGAAGCAGGGGGTGTGTGATGAGGGAAGCCCCTTACCTCCACCCCTCCGTATCTCTTTAAAAAGCCTGTTGGCGGCGGAGATGAAGCTAGTGTATGGTGACGAGCAGCACAACATTACCCAGCAGCCCTCCAAGTCCCCAGTCACCTCCTCGGCTTCACAATTTATGTGTCAAGCCTCTGAAATAGTAGGTCCTCCAAGTGGACCTAATCTCGGCTTTCTGCCTCAAATTGACAAATGGCTGGATGTAGCCTTACAGGATGCCGACTCATACTACCAACAGAAGAAATATGGGATCGCAGCCAGTCGTTTTACCACAGCTCTGGAGctgtgtTCAAAAGGCGCTGCAGTTGAACAATCTTTGCATGCGGTGTATGAAGACATTTCTAAGGTTGCCAGTTTGATTGAGTCCAGACTTGTTGCCTGTTACCTGAGACTGAAGAGACCGAAGATAGCCCTCAACCACTCCCATAGAGCCATCCAGCTAAACCCCATCTATTTCCGCCACCATCTGCGCCAGGCCATGGTGTATCGACTGCTGGGGAACCCATGTGCCGCGGCGAGGAGTGCCATGATTGCTGACTGGGTGTACTGGCTGTCCGGGGGCTCAGATGAACACATAAGCAAGCTCATCAAACTGTATTGGCAGGCTCTGTTGGACGAGGCGATCATCATGGAGGATGGTTTCTCTGTCATGTACACCCCGTGCTCTGCTGGGGACTCCGTGGGGGATTGCATCGCCAAGGCTGAGGAGACCTTCAGGAAACAGAACCCTGCCTTCACAGACTACCTGTTCACAGACCCCAGTGGAGGTCACCTGCTGCCCCAAACCACAGACTGGAGCAATCCCCCGTCCACCCAGCAGAAATACGTCCTCACCCTGGGCTTCAGGAGGGGACAGGACGGCAGCTTCCTCAGCAAACTCACCAGCAGGACCTGCCCCTCTTTTAcagGACCCAGAGCCTCATTCAGCTCCAGTAGCCCAGAGGACATGGAGCGGGTGTGTGACGCGTTCAGCAGGAGGATCCTACCAGCCTTAGATTTTATTAAGTGCACCAAACTAGCTGTTGATATGGACTCATTACCCAGACGGCTATGCAGCAGCGTTAAGAGACGGCTAGGCAGCAGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCAGCGTTAAGAGACAGCTAGGCAGCAGCGTTAAGAGACGGCTTAAGAGACGGCTAGGCAGCAGCGTTACCAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACTGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTTAAGAGACGGCTAGGCAGCAGCGTTACCAGACGGCTAGGCAGCAGCGTTAAGAGACTGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGTGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACAGCTAGGCAGCAGCGTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACTGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACTGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTTAAGAGACGGCTAGGCAGCAGCGTTAAGAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTACCAGACGGCTAGGCAGCGGCGTTATCCAGACGatgtatttggctaaggtgtatgtaaacgtccgacttcagcTGTTTGAAAAATGTGTGATTAGTGATCAACAGGGCCGAGCgaaaagagagaagggggtgtGGTTTACAAGTTTTATTTTTCCCATGTTTCCTTGTTTCTCACACGCTGTGTTTGTTCCAAGACAACAGGCAGGTTTTTCCCCAGGGTCTGGGCTTGTGGAGAGGCTGCAGTATGCTGGCTACCTGGGACAGATCCAACGCAGCAGGGAGCAGACCGTCATCCTCCACCAGGCGCTGGCTGAGCTCGCTGTCGCCCCCTACCTGCAGGACCTCAGCCACGCAGAGACCTCACTGCTGCAGGCTCTAATGGCAGACACCATGGACACCCTTGAAGGAAGGCGGACTGATAGAGAACGTGTGTGGAATGAAATGCAAAAGGTGGGGATGTTGGAGGATCTGTTGTTCCAACTGGAGGAGACCTATCTGAAGAATAAGGCTCAGAGGGCCAGTAGGAAGCAGAGGGCCGGGGTCCAGGGGGCAGAGGGGAAAGCCAGAGGAAGACCCAAAGCAGGGGTCAAAATAGAAGCCAAAGGAGGGGGTACAGTGGTGACGGACAAGGCCAAAGTCCGTCCCACTGAAACCCAGCAGGAGACAGCAGTAGCACCAATGACCTTACCAGACCCATGATCTACAGGCCAGGACAGTGGAGGCCCGAAGTCGTCCTCCTCAAAATGAATGGACACCCTCCTCTCACAAAGCCTCATCTTCAGTCCCAGCATCTTTCACACCATTACTCTAGGCTGGCAGAAATAAATGGACTCTGCAGCCTTGCTTTCACTCTGATTTAGGGTCTGTTTTTAACACTCCTCCTTGTTTACTCGTTAAGATAGCGTCTCTAGCCCCACTTCTAGATGAAAGACCTAGCTGATTCAAACGTGTGGGAGTGTTCAATGTATACACAATGAGATGTGTTCATGTTTAAACTCGCTAATTTATGATTGTTCATGCAAGTTGTAATATGACAGATGGTTTGTAAACAAACAAATCCATATGGTGCAGTAGCATGATCATAATGATGTATGCATTCCCATTATGGGATTCACAGCAAATCCGGCTCCAGATTCTCTGATGTTTTGAAAACTGTCTAACATGAAACAACCTTCATTAAATCACATTATCTTTATCAATATGTTTGGTTAAGTAACAAGAAATACAAAACCCTTTTCCACAAAACCTTTTTCCACTCAATCCTTAGGAGGAAAAGAAAGGGGATTCAAATAAAACAAACATGCTTCCTCCTGAAGTAGCTAGCTGGAAACAGCAGCATAAACACTTTGTCTACAGTATGATGACCATGTTACTACAGTCTGGAGTATCACAGTCATTTCAATGCCAAATGTGCAGTTTGGGGATTGATCGGGCAGGGCAAAACCTTGTGAGTGAACACAATCAGTGGGGCCCTCGTCACTCACATGCCCACGGCTGATCCATCAACTGGCCGGTCAGCACCGGCTTCCCAAAGTAGTTCCTCTGAGACAGCCAATCAGAGGCGCTCTGTGCTATCAACAGCTGGTTTCTCTCTCCTGTTATCTACTCTCTTTGGGAAAACAAAGGCTACTGCTGAATAATCCACATTTCCCTATTTGAGGATTCATTCAGGGTTCCAACTCTACAGCACAGtgtttatctctatctctctcatcccaccctccatctgtctcttgctTCCTCCGTTTCCATTCAGATGGGTGCTTAATACCTTGGGGATTCTGTTGACACCCGAGTCGGCATAAGCAATGTTGTGATCAGCAATATGGGCATGCATTATTTTATTCGCTGAATAAATTAATGACATTTATTGAGTGGTCGGGAAGAGAAAACGTTGGCATAGGTACTCTATTGGCATCTTTAAAAGATTAGTTATGCCCGGTGCAGTTTCCATTTGGTAAACAATTATTATAATCCAAGCCTACATGCATATTTAATGAACACATTGAAGGCCATAGCCTTGTTTTTCACTTTTGTGTAAAGCTCTTTATATGAAAATGGTTAGAATGGCGATATAGGAATGCTAATGTGGTTAGTTATTTTTtgtgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaagaatttcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaat
>TU491399
AATACAAAACCTTTTTCCACTCAATCCTTAGGAGGAAAAGAAAGGGGATTCAAATAAAACAAACATGCTTCCTCCTGAAGTAGCTAGCTGGAAACAGCAGCATAAACACTTTGTCTACAGTATGATGACCATGTTACTACAGTCTGGAGTATCACAGTCATTTCAATGCCAAATGTGCAGTTTGGGGATTGATCGGGCAGGGCAAAACCTTGTGAGTGAACACAATCAGTGGGGCCCTCGTCACTCACATGCCCACGGCTGATCCATCAACTGGCCGGTCAGCACCGGCTTCCCAAAGTAGTTCCTCTGAGACAGCCAATCAGAGGCGCTCTGTGCTATCAACAGCTGGTTTCTCTCTCCTGTTATCTACTCTCTTTGGGAAAACAAAGGCTACTGCTGAATAATCCACATTTCCCTATTTGAGGATTCATTCAGGGTTCCAACTCTACAGCACAGtgtttatctctatctctctcatcccacc

Function

symbol description
spata16 Predicted to be involved in spermatogenesis. Located in Golgi apparatus. Implicated in spermatogenic failure 6.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979053.1 False 5270 mRNA 0.51 12 69950204 70004717
TU491399 True 484 lncRNA 0.46 2 69950709 69970008

Neighbor

gene id symbol gene type direction distance location
LOC110522884 LOC106604339 coding downstream 29110 69920157 ~ 69921094 (-)
LOC110524457 LOC106584309 coding downstream 116053 69825310 ~ 69834151 (-)
LOC110524454 rfc4 coding downstream 198756 69744586 ~ 69751448 (-)
LOC110524451 LOC106613917 coding downstream 206850 69738363 ~ 69743354 (-)
LOC110524450 k0841 coding downstream 221778 69715282 ~ 69728426 (-)
LOC110524463 tbl1xr1 coding upstream 832098 70836815 ~ 70870397 (-)
LOC110524467 zmat3 coding upstream 1016955 71021672 ~ 71033577 (-)
LOC110524468 LOC106613935 coding upstream 1041325 71046042 ~ 71057781 (-)
LOC110524470 LOC106613933 coding upstream 1064648 71069365 ~ 71106201 (-)
LOC110524473 LOC106613938 coding upstream 1158602 71163319 ~ 71177625 (-)
G433938 NA non-coding downstream 25343 69924661 ~ 69924861 (-)
G433918 ect2 non-coding downstream 50878 69897929 ~ 69899326 (-)
G433889 NA non-coding downstream 64045 69867333 ~ 69886159 (-)
G433820 NA non-coding downstream 212795 69736944 ~ 69737409 (-)
G433818 NA non-coding downstream 217039 69732955 ~ 69733165 (-)
G434011 NA non-coding upstream 30214 70034931 ~ 70035234 (-)
G434033 NA non-coding upstream 61154 70065871 ~ 70066259 (-)
G434041 NA non-coding upstream 69667 70074384 ~ 70074624 (-)
G434042 nlgn1 non-coding upstream 70531 70075248 ~ 70076056 (-)
G434116 NA non-coding upstream 163930 70168647 ~ 70168874 (-)
G433683 LOC106613912 other downstream 425414 69486406 ~ 69524790 (-)
G432513 NA other downstream 944098 69004619 ~ 69006106 (-)
G432338 NA other downstream 1195147 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 1242756 68699821 ~ 68707448 (-)
bend5 LOC106584333 other downstream 1597459 68331871 ~ 68352828 (-)
G435234 NA other upstream 986175 70990892 ~ 70991798 (-)
G435176 NA other upstream 1063308 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 1224465 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 1281673 71285725 ~ 71308015 (-)
G436172 LOC100136696 other upstream 2036245 72040962 ~ 72121697 (-)

Expression


Co-expression Network