Gene
RNA
| Item | Value |
|---|---|
| gene id | nlgn1 |
| gene name | nlgn1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 70065855 ~ 70348330 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nlgn1 | Predicted to enable neurexin family protein binding activity and signaling receptor activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in excitatory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; eye; gonad; and swim bladder. Orthologous to human NLGN1 (neuroligin 1). |
| description |
|---|
| neuroligin-1-like isoform X5 |
| id | description |
|---|---|
| K07378 | NLGN; neuroligin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021604119.2 | False | 7820 | mRNA | 0.46 | 7 | 70065855 | 70348330 |
| XM_021604121.2 | True | 7760 | mRNA | 0.46 | 6 | 70065855 | 70348330 |
70,040,000
70,080,000
70,120,000
70,160,000
70,200,000
70,240,000
70,280,000
70,320,000
70,320,000
70,360,000
70,400,000
70,440,000
70,480,000
70,520,000
70,560,000
70,600,000
NC_048569.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ect2 | ect2 | coding | upstream | 158292 | 69871717 ~ 69907563 (+) |
| mcf2l2 | LOC106613920 | coding | upstream | 196529 | 69758226 ~ 69869326 (+) |
| LOC110524452 | LOC106613919 | coding | upstream | 320739 | 69742416 ~ 69745116 (+) |
| LOC110524448 | LOC106613915 | coding | upstream | 362583 | 69614131 ~ 69703302 (+) |
| LOC110524446 | LOC106613913 | coding | upstream | 521806 | 69529529 ~ 69544049 (+) |
| LOC110524461 | naaladl2 | coding | downstream | 107135 | 70455465 ~ 70738345 (+) |
| si:ch211-51h4.2 | LOC106613927 | coding | downstream | 390878 | 70739208 ~ 70836826 (+) |
| si:ch211-247n2.1 | LOC106613930 | coding | downstream | 633727 | 70982057 ~ 71012481 (+) |
| pik3ca | pik3ca | coding | downstream | 685690 | 71034020 ~ 71045983 (+) |
| lamp3 | lamp3 | coding | downstream | 701726 | 71050056 ~ 71053212 (+) |
| G433121 | NA | non-coding | upstream | 16286 | 70049090 ~ 70049569 (+) |
| G433114 | NA | non-coding | upstream | 25278 | 70040350 ~ 70040577 (+) |
| G433108 | NA | non-coding | upstream | 33533 | 70032011 ~ 70032322 (+) |
| G433080 | NA | non-coding | upstream | 33932 | 70001771 ~ 70031923 (+) |
| G433020 | NA | non-coding | upstream | 147552 | 69918063 ~ 69918303 (+) |
| G434565 | NA | non-coding | downstream | 451327 | 70799657 ~ 70800461 (+) |
| G434512 | NA | non-coding | downstream | 495455 | 70843785 ~ 70846161 (+) |
| G434600 | NA | non-coding | downstream | 522894 | 70871224 ~ 70871447 (+) |
| G434650 | NA | non-coding | downstream | 605153 | 70953483 ~ 70953694 (+) |
| LOC110524423 | LOC106613476 | other | upstream | 1851751 | 68212224 ~ 68214236 (+) |
| G430796 | LOC106613888 | other | upstream | 1962321 | 68103179 ~ 68103534 (+) |
| LOC110524407 | LOC106613876 | other | upstream | 2601532 | 67458540 ~ 67464323 (+) |
| G429156 | NA | other | upstream | 3017691 | 66981949 ~ 67048164 (+) |
| G428696 | NA | other | upstream | 3923250 | 66142079 ~ 66142605 (+) |
| G434653 | NA | other | downstream | 611280 | 70959610 ~ 70959932 (+) |
| G434792 | LOC106613943 | other | downstream | 870459 | 71218789 ~ 71223578 (+) |
| G434829 | NA | other | downstream | 950285 | 71298615 ~ 71298900 (+) |
| ralgps2 | LOC106613957 | other | downstream | 1327541 | 71552653 ~ 71687963 (+) |
| G436403 | NA | other | downstream | 2155130 | 72503460 ~ 72504435 (+) |
