LOC110524468 (LOC106613935)


Basic Information

Item Value
gene id LOC110524468
gene name LOC106613935
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71046042 ~ 71057781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604145.2
TGGATAATTTTTAAGAAAGGTCTGTGTAGGCGAATAGACTACAGTCAATCATTTCAGAGGTAGGAGTCCAGTAAGGAACGAGATCTGGTCTCACATTTCCTTCTCTCCGGTCCTGGGACATACATGTCTTTGTTATGAAGCTGGGAGTGAGGCTATGTGTGCTGGTGATCTCTCTCCAGCTTTGGGCTCTGGGACAGAGGCAGGAGCTTGAGCCAGAGCAGGTCCTTGTGTTCTGTGATGACAAAGACGTGGAGGCAGCTGTGGACTTGGCCCTTGTCAAGTACAATGAGAAGCTTCCTTATGGAAATCAACTAGCACTCTACCAGATTCTGGAGGCCTCAACGGCTCAGAGTGACTCAGgcactcagtactttgtggaaTTCAATGGCAGGGTCACTGACTGTCCAGCAGGGGGAAACAAAGTCTGGAGAGACTGTGACTACCTCTCAACTGGGAACCAGGTGCCAAGCCCTTGTAATGCAACAGTCCACATGtcagagacagataaagaggtCCTGGCAGTTTTCTGTGACCCAGTTGTGGAGGCCCCTGTTGTTGCTGAACGCTCCACATGTCTGGGGTGTCCTAGGGAGATTGATGTGGACAGTGAGGACCTAAAGGCTCCTGTGACATACTCCATCACCAGGTTCAATGCGGATTCGGACTCCAGCCATCACTTCGTCCTGAACAGTGTTGGTTTTGCTACGAGACAGGTGGTTGCTGGTTTCAGGTATAGACTGATGTTCGATATGAGGAAAAGCAATTGCTCCAAAGCGGACCACAAAGAGCTGAACGATGAATGTCATCCAGATGCTGAAGATGTGGAACTTGCTCACTGCAATTCTACAGTAGATGTGGCACCTTGGAGACATGAGACTGCAGAAGCAAATGTGGAATGTGCACCAGGTCCCCTTCAGAATTTTGAAGTCTTTAGAAGAAGGCCTCCTGGATGGTCTCCCTTGAGGAACTTCAACAATTTTGCCAAAGCAACTCCAGCCTCAACTGCTTCAGCCAAAGAGGAGTCTTTAGAGGAGTCTCAGGAACTCAGCCTGACTGCTGTCACCACAGCTAGCAGAGACCCAGAGCCAGCCATGCCCCCCACCACTACTGCAGAGAGCCCTTTCCACTGCCCCTCCAAGCCCTGGACGCAGTTTGTCCCTCTAACAATCCCCAGCCCTGCACAGGAGAAAAGCACAACACCCCCAACAGTGGTAGAGGGGTGCTTTAGTGATTTAGACTTGCTGGGGAAAAAATAAGTGAATGCTGTATAATGCATTTGTATCATAAGCACACCTGCTGATTTGAAATAAAAAATTATCATTTTATTCTCTTTTTGACAATGCAGTTCAATCTCACTTTTGCATTTCCTCAAATTTGTCAAAGTACATATTAACTGTTTGGCAATTTGATACtaaaaataaataactaaatgTACGAAATTG
>XM_036978278.1
TTTATAATGGGAGAGAGGTCTGTGTAGGCGAATAGACTACAGTCAATCATTTCAGAGGTAGGAGTCCAGTAAGGAACGAGATCTGGTCTCACATTTCCTTCTCTCCGGTCCTGGGACATACATGTCTTTGTTATGAAGCTGGGAGTGAGGCTATGTGTGCTGGTGATCTCTCTCCAGCTTTGGGCTCTGGGACAGAGGCAGGAGCTTGAGCCAGAGCAGGTCCTTGTGTTCTGTGATGACAAAGACGTGGAGGCAGCTGTGGACTTGGCCCTTGTCAAGTACAATGAGAAGCTTCCTTATGGAAATCAACTAGCACTCTACCAGATTCTGGAGGCCTCAACGGCTCAGAGTGACTCAGgcactcagtactttgtggaaTTCAATGGCAGGGTCACTGACTGTCCAGCAGGGGGAAACAAAGTCTGGAGAGACTGTGACTACCTCTCAACTGGGAACCAGGTGCCAAGCCCTTGTAATGCAACAGTCCACATGtcagagacagataaagaggtCCTGGCAGTTTTCTGTGACCCAGTTGTGGAGGCCCCTGTTGTTGCTGAACGCTCCACATGTCTGGGGTGTCCTAGGGAGATTGATGTGGACAGTGAGGACCTAAAGGCTCCTGTGACATACTCCATCACCAGGTTCAATGCGGATTCGGACTCCAGCCATCACTTCGTCCTGAACAGTGTTGGTTTTGCTACGAGACAGGTGGTTGCTGGTTTCAGGTATAGACTGATGTTCGATATGAGGAAAAGCAATTGCTCCAAAGCGGACCACAAAGAGCTGAACGATGAATGTCATCCAGATGCTGAAGATGTGGAACTTGCTCACTGCAATTCTACAGTAGATGTGGCACCTTGGAGACATGAGACTGCAGAAGCAAATGTGGAATGTGCACCAGGTCCCCTTCAGAATTTTGAAGTCTTTAGAAGAAGGCCTCCTGGATGGTCTCCCTTGAGGAACTTCAACAATTTTGCCAAAGCAACTCCAGCCTCAACTGCTTCAGCCAAAGAGGAGTCTTTAGAGGAGTCTCAGGAACTCAGCCTGACTGCTGTCACCACAGCTAGCAGAGACCCAGAGCCAGCCATGCCCCCCACCACTACTGCAGAGAGCCCTTTCCACTGCCCCTCCAAGCCCTGGACGCAGTTTGTCCCTCTAACAATCCCCAGCCCTGCACAGGAGAAAAGCACAACACCCCCAACAGTGGTAGAGGGGTGCTTTAGTGATTTAGACTTGCTGGGGAAAAAATAAGTGAATGCTGTATAATGCATTTGTATCATAAGCACACCTGCTGATTTGAAATAAAAAATTATCATTTTA
>XM_021604146.2
TTACCGTGTGCTGTTGCAGGTCTGTGTAGGCGAATAGACTACAGTCAATCATTTCAGAGGTAGGAGTCCAGTAAGGAACGAGATCTGGTCTCACATTTCCTTCTCTCCGGTCCTGGGACATACATGTCTTTGTTATGAAGCTGGGAGTGAGGCTATGTGTGCTGGTGATCTCTCTCCAGCTTTGGGCTCTGGGACAGAGGCAGGAGCTTGAGCCAGAGCAGGTCCTTGTGTTCTGTGATGACAAAGACGTGGAGGCAGCTGTGGACTTGGCCCTTGTCAAGTACAATGAGAAGCTTCCTTATGGAAATCAACTAGCACTCTACCAGATTCTGGAGGCCTCAACGGCTCAGAGTGACTCAGgcactcagtactttgtggaaTTCAATGGCAGGGTCACTGACTGTCCAGCAGGGGGAAACAAAGTCTGGAGAGACTGTGACTACCTCTCAACTGGGAACCAGGTGCCAAGCCCTTGTAATGCAACAGTCCACATGtcagagacagataaagaggtCCTGGCAGTTTTCTGTGACCCAGTTGTGGAGGCCCCTGTTGTTGCTGAACGCTCCACATGTCTGGGGTGTCCTAGGGAGATTGATGTGGACAGTGAGGACCTAAAGGCTCCTGTGACATACTCCATCACCAGGTTCAATGCGGATTCGGACTCCAGCCATCACTTCGTCCTGAACAGTGTTGGTTTTGCTACGAGACAGGTGGTTGCTGGTTTCAGGTATAGACTGATGTTCGATATGAGGAAAAGCAATTGCTCCAAAGCGGACCACAAAGAGCTGAACGATGAATGTCATCCAGATGCTGAAGATGTGGAACTTGCTCACTGCAATTCTACAGTAGATGTGGCACCTTGGAGACATGAGACTGCAGAAGCAAATGTGGAATGTGCACCAGGTCCCCTTCAGAATTTTGAAGTCTTTAGAAGAAGGCCTCCTGGATGGTCTCCCTTGAGGAACTTCAACAATTTTGCCAAAGCAACTCCAGCCTCAACTGCTTCAGCCAAAGAGGAGTCTTTAGAGGAGTCTCAGGAACTCAGCCTGACTGCTGTCACCACAGCTAGCAGAGACCCAGAGCCAGCCATGCCCCCCACCACTACTGCAGAGAGCCCTTTCCACTGCCCCTCCAAGCCCTGGACGCAGTTTGTCCCTCTAACAATCCCCAGCCCTGCACAGGAGAAAAGCACAACACCCCCAACAGTGGTAGAGGGGTGCTTTAGTGATTTAGACTTGCTGGGGAAAAAATAAGTGAATGCTGTATAATGCATTTGTATCATAAGCACACCTGCTGATTTGAAATAAAAAATTATCATTTTA
>XM_021604144.2
TTTGGTCAACTAAAAAAAGTCTGTGTAGGCGAATAGACTACAGTCAATCATTTCAGAGGTAGGAGTCCAGTAAGGAACGAGATCTGGTCTCACATTTCCTTCTCTCCGGTCCTGGGACATACATGTCTTTGTTATGAAGCTGGGAGTGAGGCTATGTGTGCTGGTGATCTCTCTCCAGCTTTGGGCTCTGGGACAGAGGCAGGAGCTTGAGCCAGAGCAGGTCCTTGTGTTCTGTGATGACAAAGACGTGGAGGCAGCTGTGGACTTGGCCCTTGTCAAGTACAATGAGAAGCTTCCTTATGGAAATCAACTAGCACTCTACCAGATTCTGGAGGCCTCAACGGCTCAGAGTGACTCAGgcactcagtactttgtggaaTTCAATGGCAGGGTCACTGACTGTCCAGCAGGGGGAAACAAAGTCTGGAGAGACTGTGACTACCTCTCAACTGGGAACCAGGTGCCAAGCCCTTGTAATGCAACAGTCCACATGtcagagacagataaagaggtCCTGGCAGTTTTCTGTGACCCAGTTGTGGAGGCCCCTGTTGTTGCTGAACGCTCCACATGTCTGGGGTGTCCTAGGGAGATTGATGTGGACAGTGAGGACCTAAAGGCTCCTGTGACATACTCCATCACCAGGTTCAATGCGGATTCGGACTCCAGCCATCACTTCGTCCTGAACAGTGTTGGTTTTGCTACGAGACAGGTGGTTGCTGGTTTCAGGTATAGACTGATGTTCGATATGAGGAAAAGCAATTGCTCCAAAGCGGACCACAAAGAGCTGAACGATGAATGTCATCCAGATGCTGAAGATGTGGAACTTGCTCACTGCAATTCTACAGTAGATGTGGCACCTTGGAGACATGAGACTGCAGAAGCAAATGTGGAATGTGCACCAGGTCCCCTTCAGAATTTTGAAGTCTTTAGAAGAAGGCCTCCTGGATGGTCTCCCTTGAGGAACTTCAACAATTTTGCCAAAGCAACTCCAGCCTCAACTGCTTCAGCCAAAGAGGAGTCTTTAGAGGAGTCTCAGGAACTCAGCCTGACTGCTGTCACCACAGCTAGCAGAGACCCAGAGCCAGCCATGCCCCCCACCACTACTGCAGAGAGCCCTTTCCACTGCCCCTCCAAGCCCTGGACGCAGTTTGTCCCTCTAACAATCCCCAGCCCTGCACAGGAGAAAAGCACAACACCCCCAACAGTGGTAGAGGGGTGCTTTAGTGATTTAGACTTGCTGGGGAAAAAATAAGTGAATGCTGTATAATGCATTTGTATCATAAGCACACCTGCTGATTTGAAATAAAAAATTATCATTTTA
>XM_036978277.1
GAGGGAAAGAGACCTGAGGTCTGTGTAGGCGAATAGACTACAGTCAATCATTTCAGAGGTAGGAGTCCAGTAAGGAACGAGATCTGGTCTCACATTTCCTTCTCTCCGGTCCTGGGACATACATGTCTTTGTTATGAAGCTGGGAGTGAGGCTATGTGTGCTGGTGATCTCTCTCCAGCTTTGGGCTCTGGGACAGAGGCAGGAGCTTGAGCCAGAGCAGGTCCTTGTGTTCTGTGATGACAAAGACGTGGAGGCAGCTGTGGACTTGGCCCTTGTCAAGTACAATGAGAAGCTTCCTTATGGAAATCAACTAGCACTCTACCAGATTCTGGAGGCCTCAACGGCTCAGAGTGACTCAGgcactcagtactttgtggaaTTCAATGGCAGGGTCACTGACTGTCCAGCAGGGGGAAACAAAGTCTGGAGAGACTGTGACTACCTCTCAACTGGGAACCAGGTGCCAAGCCCTTGTAATGCAACAGTCCACATGtcagagacagataaagaggtCCTGGCAGTTTTCTGTGACCCAGTTGTGGAGGCCCCTGTTGTTGCTGAACGCTCCACATGTCTGGGGTGTCCTAGGGAGATTGATGTGGACAGTGAGGACCTAAAGGCTCCTGTGACATACTCCATCACCAGGTTCAATGCGGATTCGGACTCCAGCCATCACTTCGTCCTGAACAGTGTTGGTTTTGCTACGAGACAGGTGGTTGCTGGTTTCAGGTATAGACTGATGTTCGATATGAGGAAAAGCAATTGCTCCAAAGCGGACCACAAAGAGCTGAACGATGAATGTCATCCAGATGCTGAAGATGTGGAACTTGCTCACTGCAATTCTACAGTAGATGTGGCACCTTGGAGACATGAGACTGCAGAAGCAAATGTGGAATGTGCACCAGGTCCCCTTCAGAATTTTGAAGTCTTTAGAAGAAGGCCTCCTGGATGGTCTCCCTTGAGGAACTTCAACAATTTTGCCAAAGCAACTCCAGCCTCAACTGCTTCAGCCAAAGAGGAGTCTTTAGAGGAGTCTCAGGAACTCAGCCTGACTGCTGTCACCACAGCTAGCAGAGACCCAGAGCCAGCCATGCCCCCCACCACTACTGCAGAGAGCCCTTTCCACTGCCCCTCCAAGCCCTGGACGCAGTTTGTCCCTCTAACAATCCCCAGCCCTGCACAGGAGAAAAGCACAACACCCCCAACAGTGGTAGAGGGGTGCTTTAGTGATTTAGACTTGCTGGGGAAAAAATAAGTGAATGCTGTATAATGCATTTGTATCATAAGCACACCTGCTGATTTGAAATAAAAAATTATCATTTTA
>XM_021604142.2
GGGAAAGAGACCTGAGGTCTGTGTAGGCGAATAGACTACAGTCAATCATTTCAGAGGTAGGAGTCCAGTAAGGAACGAGATCTGGTCTCACATTTCCTTCTCTCCGGTCCTGGGACATACATGTCTTTGTTATGAAGCTGGGAGTGAGGCTATGTGTGCTGGTGATCTCTCTCCAGCTTTGGGCTCTGGGACAGAGGCAGGAGCTTGAGCCAGAGCAGGTCCTTGTGTTCTGTGATGACAAAGACGTGGAGGCAGCTGTGGACTTGGCCCTTGTCAAGTACAATGAGAAGCTTCCTTATGGAAATCAACTAGCACTCTACCAGATTCTGGAGGCCTCAACGGCTCAGAGTGACTCAGgcactcagtactttgtggaaTTCAATGGCAGGGTCACTGACTGTCCAGCAGGGGGAAACAAAGTCTGGAGAGACTGTGACTACCTCTCAACTGGGAACCAGGTGCCAAGCCCTTGTAATGCAACAGTCCACATGtcagagacagataaagaggtCCTGGCAGTTTTCTGTGACCCAGTTGTGGAGGCCCCTGTTGTTGCTGAACGCTCCACATGTCTGGGGTGTCCTAGGGAGATTGATGTGGACAGTGAGGACCTAAAGGCTCCTGTGACATACTCCATCACCAGGTTCAATGCGGATTCGGACTCCAGCCATCACTTCGTCCTGAACAGTGTTGGTTTTGCTACGAGACAGGTGGTTGCTGGTTTCAGGTATAGACTGATGTTCGATATGAGGAAAAGCAATTGCTCCAAAGCGGACCACAAAGAGCTGAACGATGAATGTCATCCAGATGCTGAAGATGTGGAACTTGCTCACTGCAATTCTACAGTAGATGTGGCACCTTGGAGACATGAGACTGCAGAAGCAAATGTGGAATGTGCACCAGGTCCCCTTCAGAATTTTGAAGTCTTTAGAAGAAGGCCTCCTGGATGGTCTCCCTTGAGGAACTTCAACAATTTTGCCAAAGCAACTCCAGCCTCAACTGCTTCAGCCAAAGAGGAGTCTTTAGAGGAGTCTCAGGAACTCAGCCTGACTGCTGTCACCACAGCTAGCAGAGACCCAGAGCCAGCCATGCCCCCCACCACTACTGCAGAGAGCCCTTTCCACTGCCCCTCCAAGCCCTGGACGCAGTTTGTCCCTCTAACAATCCCCAGCCCTGCACAGGAGAAAAGCACAACACCCCCAACAGTGGTAGAGGGGTGCTTTAGTGATTTAGACTTGCTGGGGAAAAAATAAGTGAATGCTGTATAATGCATTTGTATCATAAGCACACCTGCTGATTTGAAATAAAAAATTATCATTTTA

Function

NR:

description
kininogen-1-like

GO: NA

KEGG:

id description
K03898 KNG, BK; kininogen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604145.2 False 1442 mRNA 0.47 8 71046042 71056219
XM_036978278.1 False 1323 mRNA 0.49 8 71046159 71049418
XM_021604146.2 False 1325 mRNA 0.50 8 71046159 71049920
XM_021604144.2 False 1324 mRNA 0.49 8 71046159 71054408
XM_036978277.1 False 1324 mRNA 0.50 8 71046159 71056747
XM_021604142.2 True 1322 mRNA 0.50 8 71046159 71057781

Neighbor

gene id symbol gene type direction distance location
LOC110524467 zmat3 coding downstream 12465 71021672 ~ 71033577 (-)
LOC110524463 tbl1xr1 coding downstream 175645 70836815 ~ 70870397 (-)
LOC110524459 spata16 coding downstream 1041325 69950204 ~ 70004717 (-)
LOC110522884 LOC106604339 coding downstream 1124948 69920157 ~ 69921094 (-)
LOC110524457 LOC106584309 coding downstream 1211891 69825310 ~ 69834151 (-)
LOC110524470 LOC106613933 coding upstream 11584 71069365 ~ 71106201 (-)
LOC110524473 LOC106613938 coding upstream 105538 71163319 ~ 71177625 (-)
LOC110524474 LOC106613939 coding upstream 136993 71194774 ~ 71199198 (-)
LOC110524475 LOC106613941 coding upstream 141438 71199219 ~ 71209549 (-)
LOC110524476 LOC106613943 coding upstream 155932 71213713 ~ 71219951 (-)
G435182 NA non-coding downstream 26419 71017404 ~ 71019623 (-)
G435246 LOC106613930 non-coding downstream 35439 71006234 ~ 71010603 (-)
G435244 NA non-coding downstream 41573 71004249 ~ 71004469 (-)
G435243 NA non-coding downstream 42094 71003677 ~ 71003948 (-)
G435240 NA non-coding downstream 46950 70998782 ~ 70999092 (-)
G435177 NA non-coding upstream 8759 71066540 ~ 71067820 (-)
G435282 ycu9 non-coding upstream 55018 71112799 ~ 71114579 (-)
G435280 impact non-coding upstream 57491 71115272 ~ 71126065 (-)
G435283 NA non-coding upstream 58053 71115834 ~ 71116092 (-)
G435291 NA non-coding upstream 73697 71131478 ~ 71131685 (-)
G435234 NA other downstream 54244 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 1521252 69486406 ~ 69524790 (-)
G432513 NA other downstream 2039936 69004619 ~ 69006106 (-)
G432338 NA other downstream 2290985 68748558 ~ 68755057 (-)
G432310 LOC106613894 other downstream 2338594 68699821 ~ 68707448 (-)
G435176 NA other upstream 10244 71068025 ~ 71068887 (-)
LOC110524478 LOC106613944 other upstream 171401 71226012 ~ 71242283 (-)
il23r LOC106613945 other upstream 228609 71285725 ~ 71308015 (-)
G436172 LOC100136696 other upstream 983181 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 1530503 72588284 ~ 72588576 (-)

Expression

LOC110524468(LOC106613935) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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LOC110524468(LOC106613935) Expression in each Bioproject

Bar chart with 20 bars.
LOC110524468(LOC106613935) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60000.
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Co-expression Network