hook1 (LOC106613947)


Basic Information

Item Value
gene id hook1
gene name LOC106613947
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71328260 ~ 71341344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604184.2
TCCGTCTAAACCGCGTAACGGAAAACGTCAAAGCGCGAGGCAGTTATTCACGTATGAATTTACGGTGCTTTTACTGCGCAGTGAGCAGGAAACTTATCCATATTACGCAGTTAACGTTATAGATGCAACCCCTGCAGGTGAGGTCAAATGCAGAAGGAAGGGGAacggtgttgttgttgatggcaGGTGCATCGGACATATCTGGCCAAACCTGACGGGGAGAAATGGAGACGGACAAAGCGGTGCTGTGTGAGAGCCTTATTATTTGGCTCCAGACCTTTAACACTGGGTCACCATGTACAGCTGTAGCGGAGCTCACCACGGGCGTCGCAATGTCTCAGGCCTTGCATCAGATAGATCCAGCGTGGTTCAGTAAAAGTTGGCTCGGTCGCATTAAAGAAGATGTTGGGGATAACTGGAGACTCAAAATGAACAACCTGAAGAAGATCCTTCAGATGATGGTGGATTACTACAATGAGGCCCTGAGCCAGCAGATCCAGGAGTTTCCATTGCCAGACCTGGTGAAGGTGGCAGAACACTCAGACCCTGTAGAACTTGGACGACTGCTGCAGCTCATACTGGGCTGTGCTGTCAAATGTGAACGCaaacaagAGTACATCCAGGTCATCATGACTCTGGAGGAGTCCGTACAGCATGTGGTGATGACGGCCATTCAGGAGCTGATGAGTAAAGAGAACATGGCCCAGTTTGGAGCAGAGCCACCGGGGGATGTAGAatcacagTTGAAGAAGGCTCTTGAGGACCTGGCGGATCTGATGTCAGAGAAGGAGGAACTAGCCCAGCGCTGTCATGAGCTCGACGTAcagGTGACAGTCCTTCAGGAGGAGCGGAACAGCCTATTAGCTGAGAACGATGTGCTGACGGACCGAGCCAATCAGCTGGACGCGTTTGATGACCCAAGCACGCCCTCCGGACGGAAACACAGCCAGCTACAGATACAGCTAGAGACACTACAGGAGGAGAActtcaggttagaGGCAGCTAAGGATGACTACCGGATCCACTGTGAGGAGTTGGAGAAGCAGCTGATCGAGGTCCAGCATCGTAACGACGAACTTACTAGCCTGGCCGAGGAGTCACGAGCACTTAAAGACGAACTCGACATCCTCAGGAGCTGTTCAGACCGTGCTGTGAAGCTGGAGGCATCAGTGGAGACATACAGGCGTAAACTGGAAGACCTGGGAGATCTGAGGAGACAAGTCAAACTGCTGGAGGAGAAGAACATGACCTACATGCACAACACTGTCAGTCTGGAGGAGGAGCTACGCAAGGCTAACACTGCCCGCGCACAGCTAGAGACatacaagagacagGTCCAGGAGCTGCACCGGAAGTTGTCAGAGGAGTCTCGGCGGGCAGATAACCTGGCCTACGAGATGAAGAAGTTTGAGGAGAAATACGACGCTGTGATGAAGGAGAAAGAGAAGATCATCATTGAGCGAGACTCTTTGAAGGAGACCAATGAGGAGCTACGCTGTAACCAGGCTCAACAAGACCAGCTCCGACAAGCAGGGATGGCAGGGATGCCAGCTGGCAGTCCAAGCCATGATAACCTTGCTGCTGAAATCCTACCTATAGAGTACAGGGAGAAGTTTATCCGGCTCCAGCATGAGAATAAGATGTTGCGTGTGCAGCAGGAGGGATCAGAGAATGAGAAGATCTCTGAACTACAGACACTGCTAGAGGAGGCACACCGATCACGCTCTGAACTGGACACTGAGAACAGGTTAAACCGGGAGAGAGTCACTGAGCTGCAACAGCAGGTAGAGGATCTACAGAAAAGCCTACAGGGCCAAGGGGCCAAGACTGATGACTCTCACCTGAAGAGGAAACTGGATGCTCATATGGTGCAACTGAATGAGGCACAGGATGAGATCATGAAGAAGAAAGAACTGCTGGAGGACCTGCAGCCAGACAACACACAGACCTCTCTGAGACTGGAGGAGCTGATGGCTGCTCTGAAGAAGAAGGATGATGATATGAGAGCCATGGAGGAGAGATACAAGATGTATCTGGAGAAGGCACGCAACGTGATCCGTGCATTGGACCCCAAGCTGAACCCAGCCACAGCAGAGATCCAGGCTCTGAAGAACCAGCTGATGGACAGAGACAAGAGGATCCTCAGTCTGGAGAGGGAGTGTGAGCAGGCAAAGCTGAGAGAGTATGAGGAGAAGCTGATTGTAACAGCATGGTACAACAAGAGTCTGAGCTTCCAGAAGCTGGCGATCGAGGCCCGTCTGGGGGGTCGCTCCACCTCTATGGTGCCCCCCGGTCAGTCCTTCCTGTCCCAGCAGCGCCAGGTCACCAACGCCACCCGCAGGACTCTCTCTGTCAGCATGCCTGCCACCACCTCTAACTAGACCTGGGATGGGTGACTACTTAGGTGGGCCACCGTGTATGCAGGCTAAAGTTAGACCATGATTAGTTTAATAAGGTGTGTTCGTGCTGGGCCGGAACAGAAGCCTGCTGACATGGCAGCCTGCTGTCATGGCGGCCCACTAAGACCGGGGTCTCCCACATCTGAAGGAAACAAACAAATggctcctctctcactcccttccaCAAGTGCACACTCAAGTGACCTTAAGCACACTAGCTTTCAGCCCCTGGGGAGGGGACAAGCATGCACTGACTGATGTGAACATGAGCACTTGGTCTAGTTAGGTTCCCTCTTCCTCACTgatacactgtactgtaatatacccCACAGTAGCACACAACAGCACGGTTGCTTATAATCACCTGGAATGAGTTTGGTCTGAGTTGACAACCCTATCCACATGCTTTATTAGCTTTAGCCTAGCACAGAACACTGACTGAGCCCTTCAATATACCTGTGTTAGTCTAGATAGCATCAAGCTCTGACTGGAATGCCTATTGAACGAACCTTGATCTCGACATCCTGACACGCTGTATATTGAGTCCGGGATATGTCATTTATTCCGTCTATGAATGCGCAAGAAAATACAATTGGAGCTTGTAAGACATGTGGTCTTTAAATGGCTTATTTGAATGCTATTACCAGCTGAATATAAGTgatattctaaaatgttttcatACTTTACAaaatgaagaatcaacaacactaTGCAGTTAAAGGATGTAACAAACACCCTATTAACCATTGGACTACAGAGAGAGTTTGACCTCTGAtcttcctcctctgtgttgtcacaATCACCAGGGATGAATGGAGCACAGATAACTGAGAAATAGGTGTATTTGGTGCTGGCCACCAAACGTCCATAACTAGTTTCTTACACAAAAGTAGGAAGTCTATACTGCAGACCTGTGTCAATATCCTGTGATGTCATACTGACATATATCTCTGGTGCGGCAGCCTAGAATCAATTAATCAAATCAGAAATCCAGGACTATTTATggtatttattttctgtgtgttaACTGTGATCTGTACTAGAATTTACTGCATGCTCTAACGGAATACTGTTGGGCCTTTATATTCTCTGAATGTCTTGTCTAGATGAGTAGTAAGGTTTCAACAGTATAATCTATACAGCACTACTGTTATCAGGGTTCAAACACCAGCTTGGCATTTATGGGCCAGTTTCACAGACCCAGATTAAATTAGTTAGGTTATGAAATGTGGATTAATTAAACCTTGTCCTGGATGTATTGCATCTGCAATTGTGGACACAGCTCCTAGATTTTAATATTATTCCTCTCTGATGAAGTGAAAATGTTGTGACAACCTTTTTGAATGTCTTTAAATTTGTTTGGGCACATTAGCCTTCCTCTGTACCCACAACGCATTTGGGGATTGAGTTTGATGCATCTTGGCTTGAGGTGCACTGGGATAACTGAATGAAACAATCGTCTCTTTAAAATAGCTATCCACTGATGTTATGATCCCTACTGGGTTGGATTGTTAGCCTTATAGTGAGGCTTACTTTAGCTCAAGGCAAGCAATTAGCTAGATGTTGGATTTGCTGTTTTGAGAAAATGTGAAATTCTTATGTCATGTGCTGCTGCTTACATTTTATACACACACTTCAGCTAAAATTATTTGGACTCTAGAGCAGCGTACAAAGCTGATTTCACGGCAtagttttttaaaacttttttgcaGTGGATAGTACTTGTACGTCTACTGATTCACATACATACAATGCCATGTATACAGAGATCAGCGCAGCACTAGGAAATGAGATCTGAACAACGCTGTTTGGATAGTAGGCTACTTGTTGATTGTGTTAGTGGGAAAATAAGTGTGAATAATGAAAGATAAGTCTGAAGGCCTTTTCATGTCGTGTACAGAATAAAGTCTTTTCAAAGCGTTGAGTTCGTTATGGA

Function

NR:

description
protein Hook homolog 1-like

GO: NA

KEGG:

id description
K16612 HOOK1; protein HOOK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604184.2 True 4335 mRNA 0.47 22 71328260 71341344
Loading

Neighbor

gene id symbol gene type direction distance location
il23r LOC106613945 coding downstream 20245 71285725 ~ 71308015 (-)
il12rb2 i12r2 coding downstream 42950 71269872 ~ 71285310 (-)
LOC110524479 LOC106614022 coding downstream 69436 71255252 ~ 71258824 (-)
LOC110524478 LOC106613944 coding downstream 85977 71226012 ~ 71242283 (-)
LOC110524476 LOC106613943 coding downstream 108309 71213713 ~ 71219951 (-)
pfas pfas coding upstream 13724 71355068 ~ 71366687 (-)
ipo13 LOC106613950 coding upstream 30329 71371673 ~ 71423509 (-)
LOC110524487 LOC106613951 coding upstream 93691 71435035 ~ 71440118 (-)
LOC118964746 NA coding upstream 111802 71453146 ~ 71453261 (-)
zyg11 LOC106613955 coding upstream 191108 71532452 ~ 71542743 (-)
G435386 NA non-coding downstream 29585 71298465 ~ 71298675 (-)
G435383 NA non-coding downstream 33239 71294743 ~ 71295021 (-)
G435361 NA non-coding downstream 82873 71245157 ~ 71245387 (-)
G435359 NA non-coding downstream 85443 71242542 ~ 71242817 (-)
G435313 NA non-coding downstream 169119 71158940 ~ 71159141 (-)
G435435 NA non-coding upstream 91267 71432611 ~ 71434941 (-)
G435496 NA non-coding upstream 171497 71512841 ~ 71513192 (-)
G435509 LOC106614023 non-coding upstream 173939 71515283 ~ 71516296 (-)
G435510 NA non-coding upstream 176279 71517623 ~ 71517854 (-)
G435176 NA other downstream 259373 71068025 ~ 71068887 (-)
G435234 NA other downstream 336462 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 1803470 69486406 ~ 69524790 (-)
G436172 LOC100136696 other upstream 699618 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 1246940 72588284 ~ 72588576 (-)
G436842 NA other upstream 1274952 72616296 ~ 72616944 (-)
G436847 NA other upstream 1330810 72672154 ~ 72672826 (-)
G436873 NA other upstream 1433217 72774561 ~ 72775868 (-)

Expression

hook1(LOC106613947) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 50.
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hook1(LOC106613947) Expression in each Bioproject

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hook1(LOC106613947) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network