LOC110524487 (LOC106613951)


Basic Information

Item Value
gene id LOC110524487
gene name LOC106613951
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71435035 ~ 71440118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604191.2
CTCTCTTCCGCGTTGTAAGCATTTAATCTATCAACTACAATACCCAGAACCCATTAGGGCAACATATTATACGCAATCACGTTGAGGATTTAAAAGTGGAACAGGACAGTACAGCAGCCCTGACTGAGATGAACTGGGACAACCAGCTGAGCTCCATCCTCTCAGCAGCTGATGGCAGTGTTGCCAAGATGAGGGAGAGACTGACCACGCCAGGGAATTATCCAAAAGGAAGAGAAGTAGATCTCTTTCCAGTCAGGGAGGTGGCTAGTGTGTCAAATTTTGAGCTCCCtcgccccccccctctccccaagtcctccatctctctcctcccccctccctcctccgctGTGCAGTGGGCAGACCTGGCAGCCGTCCAATCACAACTGCAGATCCAGAGCCAGGCCATAGAGTCTCTGACCCAAAGTCTTCAtgacatggacagagagagacactctcAGCAGCGCCACATACAGGCACTACAAGATGTGTTATTCTTCTATCTCTCAGACGAGGTTCGCAGGCTGCGAGAGCAGgcgacggagagggagagagagcgggaacaagaaagggatggagagaggagagggtcagggatGACTAGTCCAGAAGTGGAGAGAAGGATGGACCAGTGGAGGAGAGATGTGGGCCGTGAGCTCAGCACTCTGAGAAGGCACATCACCGGAGCCACATCGCAAGGCAAcctggaggagagTTTCTGCTCTAAGCTGCGAAGGGAGGAGTTGGATCATTTGAGGAGAGAGGTGGACACACTCAAAACCCAGCTCAggaggCAGGAGGAGGACATGTTTCTTCAGCAGTCGGAGGCCAGAGAGACGAGTAGGCAGTATGAACACAGCTGCAAGACACTAGAGGAACTAACAGACAGCTACAGAAACCACAGCTTTGACCTGGCCAAGACTGTttctcaatacacacacacagagcaggaggTCCGCcagatcagGATAACTGTATCGGAGCTGAAGGACGAGATCAGGAGTCTGATTCTCCGGGAGAGACATCACACACCTACTGTTACACTACACACAGCAGttcCAGCATTAGCTGCCTTCTCCCGCTGTAAAGATGCCAGGGGTCAAAAGGCGGAGCCAGACTCTGACTCTGACGACTTCAGTCCCACCCCCAGTCTGGCTGAGGTCAGCTCTGATgacctgtcctggctggatgaCAGAGACACAGCTCCTCCTCTAGCAGTACCTCGGGTACATCAGAGCTCCCATTCTGCAGGAAATGACCTCAGAGGACCAGGAAGTGGCCTGGACGATGATGATGatcttgatgatgatgatgatgatggaaacCTGGAGTTGGGGTCAGACAGCCCCCCCGACCTCAGCCTCAATGACCTTTGAGAGGCTTCGTCATGCCAGTGTTCTAGAATGCTATGAGTTCTTTCTTTGAGGAGTTTTTGGGCACAAACCTCAAACCCTGACTAAAGAGGATGATGAAAAGGCTGAACTCTGCTTGAGAAAAAGAAAGCACCTTATTTTAAAAACTCCTAAGTGATTATGCTCTTTTGTCTTGTGTCAGTGTTTTTTGGGAAAAGGTGTACAATAGTGTTTTGTATTACACACCAATAGTATTTAACTCAACAGTGTGGCAGCATTCTGTGATTGTCTTAATGAATTACATCTGGGGAAAGCTTTGATTTCACTGACGATATACAACTTGATGATCACTGGTGTTTTTGAGTCTAAGACCattagtaaaacatatggtggaCTGATGTTTACTTTTACTATCTAAGGCTGATGCAAATCAGTGAGGTGCTCTCTGTTATTTGGTACGGTATTTTGATCTATTTACTGTAaagtattgagatgcagcccaggcCTCTCTTCCCTCTCGCCTTTGGACCACAGACAAGTCCTGCTGTGTAACATGAGTCGGTCTGTTTAATATTTCAGCAGTTAGAGACTGTCTAGCCAGATAACCCCTCCCCGCGAAGGGGAATGGCCCATGGAGCGAGGGACCACAGATGGGCTGGGGAGAGGGGGGTTAATGGAGGGGGCAATGGGGAAGGGGTGAGATAGGGAGGGGCTTTGGCCATAGTGATGACAAGTTTTAATGTGGATGATTCAGGGCTTTCTCTTACAGTTCTATCACACACAGCCAAGTACTAGACCGCTGCTTGTTTAAATGTTACATTGACTCACTGTACGGCCTGTAAAACAAATGTGATGATTTTGGGCTTCTGCAATAAAATTCTGGATAAAGAGCTGTAATAAAATA
>XM_021604193.2
CTCTCTTCCGCGTTGTAAGCATTTAATCTATCAACTACAATACCCAGAACCCATTAGGGCAACATATTATACGCAATCACGTTGAGGATTTAAAAGTGGAACAGGACAGTACAGCAGCCCTGACTGAGATGAACTGGGACAACCAGCTGAGCTCCATCCTCTCAGCAGCTGATGGCAGTGTTGCCAAGATGAGGGAGAGACTGACCACGCCAGGGAATTATCCAAAAGGAAGAGAAGATCTCTTTCCAGTCAGGGAGGTGGCTAGTGTGTCAAATTTTGAGCTCCCtcgccccccccctctccccaagtcctccatctctctcctcccccctccctcctccgctGTGCAGTGGGCAGACCTGGCAGCCGTCCAATCACAACTGCAGATCCAGAGCCAGGCCATAGAGTCTCTGACCCAAAGTCTTCAtgacatggacagagagagacactctcAGCAGCGCCACATACAGGCACTACAAGATGTGTTATTCTTCTATCTCTCAGACGAGGTTCGCAGGCTGCGAGAGCAGgcgacggagagggagagagagcgggaacaagaaagggatggagagaggagagggtcagggatGACTAGTCCAGAAGTGGAGAGAAGGATGGACCAGTGGAGGAGAGATGTGGGCCGTGAGCTCAGCACTCTGAGAAGGCACATCACCGGAGCCACATCGCAAGGCAAcctggaggagagTTTCTGCTCTAAGCTGCGAAGGGAGGAGTTGGATCATTTGAGGAGAGAGGTGGACACACTCAAAACCCAGCTCAggaggCAGGAGGAGGACATGTTTCTTCAGCAGTCGGAGGCCAGAGAGACGAGTAGGCAGTATGAACACAGCTGCAAGACACTAGAGGAACTAACAGACAGCTACAGAAACCACAGCTTTGACCTGGCCAAGACTGTttctcaatacacacacacagagcaggaggTCCGCcagatcagGATAACTGTATCGGAGCTGAAGGACGAGATCAGGAGTCTGATTCTCCGGGAGAGACATCACACACCTACTGTTACACTACACACAGCAGttcCAGCATTAGCTGCCTTCTCCCGCTGTAAAGATGCCAGGGGTCAAAAGGCGGAGCCAGACTCTGACTCTGACGACTTCAGTCCCACCCCCAGTCTGGCTGAGGTCAGCTCTGATgacctgtcctggctggatgaCAGAGACACAGCTCCTCCTCTAGCAGTACCTCGGGTACATCAGAGCTCCCATTCTGCAGGAAATGACCTCAGAGGACCAGGAAGTGGCCTGGACGATGATGATGatcttgatgatgatgatgatgatggaaacCTGGAGTTGGGGTCAGACAGCCCCCCCGACCTCAGCCTCAATGACCTTTGAGAGGCTTCGTCATGCCAGTGTTCTAGAATGCTATGAGTTCTTTCTTTGAGGAGTTTTTGGGCACAAACCTCAAACCCTGACTAAAGAGGATGATGAAAAGGCTGAACTCTGCTTGAGAAAAAGAAAGCACCTTATTTTAAAAACTCCTAAGTGATTATGCTCTTTTGTCTTGTGTCAGTGTTTTTTGGGAAAAGGTGTACAATAGTGTTTTGTATTACACACCAATAGTATTTAACTCAACAGTGTGGCAGCATTCTGTGATTGTCTTAATGAATTACATCTGGGGAAAGCTTTGATTTCACTGACGATATACAACTTGATGATCACTGGTGTTTTTGAGTCTAAGACCattagtaaaacatatggtggaCTGATGTTTACTTTTACTATCTAAGGCTGATGCAAATCAGTGAGGTGCTCTCTGTTATTTGGTACGGTATTTTGATCTATTTACTGTAaagtattgagatgcagcccaggcCTCTCTTCCCTCTCGCCTTTGGACCACAGACAAGTCCTGCTGTGTAACATGAGTCGGTCTGTTTAATATTTCAGCAGTTAGAGACTGTCTAGCCAGATAACCCCTCCCCGCGAAGGGGAATGGCCCATGGAGCGAGGGACCACAGATGGGCTGGGGAGAGGGGGGTTAATGGAGGGGGCAATGGGGAAGGGGTGAGATAGGGAGGGGCTTTGGCCATAGTGATGACAAGTTTTAATGTGGATGATTCAGGGCTTTCTCTTACAGTTCTATCACACACAGCCAAGTACTAGACCGCTGCTTGTTTAAATGTTACATTGACTCACTGTACGGCCTGTAAAACAAATGTGATGATTTTGGGCTTCTGCAATAAAATTCTGGATAAAGAGCTGTAATAAAATA
>XM_021604194.2
CTCTCTTCCGCGTTGTAAGCATTTAATCTATCAACTACAATACCCAGAACCCATTAGGGCAACATATTATACGCAATCACGTTGAGGATTTAAAAGTGGAACAGGACAGTACAGCAGCCCTGACTGAGATGAACTGGGACAACCAGCTGAGCTCCATCCTCTCAGCAGCTGATGGCAGTGTTGCCAAGATGAGGGAGAGACTGACCACGCCAGGGAATTATCCAAAAGGAAGAGAAGTAGATCTCTTTCCAGTCAGGGAGGTGGCTAGTGTGTCAAATTTTGAGCTCCCtcgccccccccctctccccaagtcctccatctctctcctcccccctccctcctccgctGTGCAGTGGGCAGACCTGGCAGCCGTCCAATCACAACTGCAGATCCAGAGCCAGGCCATAGAGTCTCTGACCCAAAGTCTTCAtgacatggacagagagagacactctcAGCAGCGCCACATACAGGCACTACAAGACGAGGTTCGCAGGCTGCGAGAGCAGgcgacggagagggagagagagcgggaacaagaaagggatggagagaggagagggtcagggatGACTAGTCCAGAAGTGGAGAGAAGGATGGACCAGTGGAGGAGAGATGTGGGCCGTGAGCTCAGCACTCTGAGAAGGCACATCACCGGAGCCACATCGCAAGGCAAcctggaggagagTTTCTGCTCTAAGCTGCGAAGGGAGGAGTTGGATCATTTGAGGAGAGAGGTGGACACACTCAAAACCCAGCTCAggaggCAGGAGGAGGACATGTTTCTTCAGCAGTCGGAGGCCAGAGAGACGAGTAGGCAGTATGAACACAGCTGCAAGACACTAGAGGAACTAACAGACAGCTACAGAAACCACAGCTTTGACCTGGCCAAGACTGTttctcaatacacacacacagagcaggaggTCCGCcagatcagGATAACTGTATCGGAGCTGAAGGACGAGATCAGGAGTCTGATTCTCCGGGAGAGACATCACACACCTACTGTTACACTACACACAGCAGttcCAGCATTAGCTGCCTTCTCCCGCTGTAAAGATGCCAGGGGTCAAAAGGCGGAGCCAGACTCTGACTCTGACGACTTCAGTCCCACCCCCAGTCTGGCTGAGGTCAGCTCTGATgacctgtcctggctggatgaCAGAGACACAGCTCCTCCTCTAGCAGTACCTCGGGTACATCAGAGCTCCCATTCTGCAGGAAATGACCTCAGAGGACCAGGAAGTGGCCTGGACGATGATGATGatcttgatgatgatgatgatgatggaaacCTGGAGTTGGGGTCAGACAGCCCCCCCGACCTCAGCCTCAATGACCTTTGAGAGGCTTCGTCATGCCAGTGTTCTAGAATGCTATGAGTTCTTTCTTTGAGGAGTTTTTGGGCACAAACCTCAAACCCTGACTAAAGAGGATGATGAAAAGGCTGAACTCTGCTTGAGAAAAAGAAAGCACCTTATTTTAAAAACTCCTAAGTGATTATGCTCTTTTGTCTTGTGTCAGTGTTTTTTGGGAAAAGGTGTACAATAGTGTTTTGTATTACACACCAATAGTATTTAACTCAACAGTGTGGCAGCATTCTGTGATTGTCTTAATGAATTACATCTGGGGAAAGCTTTGATTTCACTGACGATATACAACTTGATGATCACTGGTGTTTTTGAGTCTAAGACCattagtaaaacatatggtggaCTGATGTTTACTTTTACTATCTAAGGCTGATGCAAATCAGTGAGGTGCTCTCTGTTATTTGGTACGGTATTTTGATCTATTTACTGTAaagtattgagatgcagcccaggcCTCTCTTCCCTCTCGCCTTTGGACCACAGACAAGTCCTGCTGTGTAACATGAGTCGGTCTGTTTAATATTTCAGCAGTTAGAGACTGTCTAGCCAGATAACCCCTCCCCGCGAAGGGGAATGGCCCATGGAGCGAGGGACCACAGATGGGCTGGGGAGAGGGGGGTTAATGGAGGGGGCAATGGGGAAGGGGTGAGATAGGGAGGGGCTTTGGCCATAGTGATGACAAGTTTTAATGTGGATGATTCAGGGCTTTCTCTTACAGTTCTATCACACACAGCCAAGTACTAGACCGCTGCTTGTTTAAATGTTACATTGACTCACTGTACGGCCTGTAAAACAAATGTGATGATTTTGGGCTTCTGCAATAAAATTCTGGATAAAGAGCTGTAATAAAATA
>TU493011
gtgagtgatgctATCACTGTGTCCTGCAGGATAACTGTATCGGAGCTGAAGGACGAGATCAGGAGTCTGATTCTCCGGGAGAGACATCACACACCTACTGTTACACTACACACAGCAGttcCAGCATTAGCTGCCTTCTCCCGCTGTAAAGATGCCAGGGGTCAAAAGGCGGAGCCAGACTCTGACTCTGACGACTTCAGTCCCACCCCCAGTCTGGCTGAGGTCAGCTCTGATgacctgtcctggctggatgaCAGAGACACAGCTCCTCCTCTAGCAGTACCTCGGGTACATCAGAGCTCCCATTCTGCAGGAAATGACCTCAGAGGACCAGGAAGTGGCCTGGACGATGATGATGatcttgatgatgatgatgatgatggaaacCTGGAGTTGGGGTCAGACAGCCCCCCCGACCTCAGCCTCAATGACCTTTGAGAGGCTTCGTCATGCCAGTGTTCTAGAATGCTATGAGTTCTTTCTTTGAGGAGTTTTTGGGCACAAACCTCAAACCCTGACTAAAGAGGATGATGAAAAGGCTGAACTCTGCTTGAGAAAAAGAAAGCACCTTATTTTAAAAACTCCTAAGTGATTATGCTCTTTTGTCTTGTGTCAGTGTTTTTTGGGAAAAGGTGTACAATAGTGTTTTGTATTACACACCAATAGTATTTAACTCAACAGTGTGGCAGCATTCTGTGATTGTCTTAATGAATTACATCTGGGGAAAGCTTTGATTTCACTGACGATATACAACTTGATGATCACTGGTGTTTTTGAGTCTAAGACCattagtaaaacatatggtggaCTGATGTTTACTTTTACTATCTAAGGCTGATGCAAATCAGTGAGGTGCTCTCTGTTATTTGGTACGGTATTTTGATCTATTTACTGTAaagtattgagatgcagcccaggcCTCTCTTCCCTCTCGCCTTTGGACCACAGACAAGTCCTGCTGTGTAACATGAGTCGGTCTGTTTAATATTTCAGCAGTTAGAGACTGTCTAGCCAGATAACCCCTCCCCGCGAAGGGGAATGGCCCATGGAGCGAGGGACCACAGATGGGCTGGGGAGAGGGGGGTTAATGGAGGGGGCAATGGGGAAGGGGTGAGATAGGGAGGGGCTTTGGCCATAGTGATGACAAGTTTTAATGTGGATGATTCAGGGCTTTCTCTTACAGTTCTATCACACACAGCCAAGTACTAGACCGCTGCTTGTTTAAATGTTACATTGACTCACTGTACGGCCTGTAAAACAAATGTGATGATTTTGGGCTTCTGCAATAAAATTCTGGATAAAGAGCT

Function

NR:

description
uncharacterized protein LOC110524487 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604191.2 False 2253 mRNA 0.49 12 71435035 71440118
XM_021604193.2 False 2250 mRNA 0.49 12 71435035 71440118
XM_021604194.2 False 2229 mRNA 0.49 12 71435035 71440118
TU493011 True 1307 lncRNA 0.46 3 71435046 71437229

Neighbor

gene id symbol gene type direction distance location
ipo13 LOC106613950 coding downstream 11526 71371673 ~ 71423509 (-)
pfas pfas coding downstream 68348 71355068 ~ 71366687 (-)
hook1 LOC106613947 coding downstream 93691 71328260 ~ 71341344 (-)
il23r LOC106613945 coding downstream 127020 71285725 ~ 71308015 (-)
il12rb2 i12r2 coding downstream 149725 71269872 ~ 71285310 (-)
LOC118964746 NA coding upstream 13028 71453146 ~ 71453261 (-)
zyg11 LOC106613955 coding upstream 92334 71532452 ~ 71542743 (-)
angptl1a LOC106613958 coding upstream 181055 71621173 ~ 71661464 (-)
faslg LOC106613961 coding upstream 341563 71781681 ~ 71792919 (-)
si:dkey-86e18.1 LOC106613962 coding upstream 377427 71817545 ~ 71827015 (-)
G435435 NA non-coding downstream 94 71432611 ~ 71434941 (-)
G435386 NA non-coding downstream 136360 71298465 ~ 71298675 (-)
G435383 NA non-coding downstream 140014 71294743 ~ 71295021 (-)
G435361 NA non-coding downstream 189648 71245157 ~ 71245387 (-)
G435359 NA non-coding downstream 192218 71242542 ~ 71242817 (-)
G435496 NA non-coding upstream 72723 71512841 ~ 71513192 (-)
G435509 LOC106614023 non-coding upstream 75165 71515283 ~ 71516296 (-)
G435510 NA non-coding upstream 77505 71517623 ~ 71517854 (-)
G435511 NA non-coding upstream 79149 71519267 ~ 71519786 (-)
G435512 LOC106573797 non-coding upstream 80316 71520434 ~ 71520943 (-)
LOC110524478 LOC106613944 other downstream 204446 71226012 ~ 71242283 (-)
G435176 NA other downstream 366148 71068025 ~ 71068887 (-)
G435234 NA other downstream 443237 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 1910245 69486406 ~ 69524790 (-)
G436172 LOC100136696 other upstream 600844 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 1148166 72588284 ~ 72588576 (-)
G436842 NA other upstream 1176178 72616296 ~ 72616944 (-)
G436847 NA other upstream 1232036 72672154 ~ 72672826 (-)
G436873 NA other upstream 1334443 72774561 ~ 72775868 (-)

Expression


Co-expression Network