fam20b (LOC106613959)



Basic Information


Item Value
gene id fam20b
gene name LOC106613959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71695892 ~ 71709750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021604208.2
AAATTCCGTGACCCGGAACAACTGTTTAAGTGTTGCTGACGAAACGCGGATTTTTTTGACAGCCTATCGATGAATAATACACAATTTCACACACAACATTGAAAACACATTGATCTCGTTTAACACCTAGTAGCCGTAATCGAAAAGGCCGGTTGCTGGTACAGTAGGGGCCTGGTCTAGCTGTGGGTCTTGTGGTGAGACAGAGATCCACACCTGCCCTTCAGAAGGGTGTGTGTTGGAGCTGGGAGGGGGAAGCGACTAGAGGGGGGGCAGGTGCCATGCTCTAGGGGTGAGGTGGTGAAGAGGGGGACTCACAGGTCAGGGGTGGTGTCTGAGGTTGCAGAGGAGATGAAGTTGAAGCAGCGTGTGGTTGTACTGGTTGCTGTGCTACTCCTGTTGGGGCTTGCCAAACTTTTTCTGCTGGACGGAGGAGAGGGGTCCGCAGCCAGCCGACGAGACCTCAGAGCCTTCCGCAAGATGGAGGCAGGCCTGTCTCTCTCCCGCGGTGCCCGTTTAACACACACTCTCCAGTCTCCATGGGAGGTGGCAGGCCAGTGGGTGGGCCCAAGGGAGGTGTACCCTGAGGAGACCCCCGAGCTGGCAGCCGTCCTCACCGCGTTGGGCACTGCCAGGGTGGAGCGAGCAGACGTGGGCTACAAGGGCACCCAGCTCAAAGCTCTACTAGTACTGGACGGGGGGCAGAAAGTGGTCTTTAAACCCAAGAGGTATAGTAGAGACTATATGGTAGAAGGAGAGCCATATGCAGGTTATGATAGACACAATGCAGAGGTGGCAGCTTTTCACCTGGACAGGATCCTGGGCTTCAGGAGAGCACCCCTAGTGGTAGGGAGGTTTGTCAACCTGAGGACTGAGATCAAACCTGTCGCCACGGACCAGCTACTCAGTACCTTTCTAATGCAGGgtaatAATAGTTGTTTCTATGGGAAGTGTTACTACTGTAGAGAGAGTGAGCCCGCATGTGCGGAGGGAGAGAACATGGAGGGATCGTTAACTCTCTGGCTGCCAGATGTCTGGCCGCTCCAGAAACATAGACACCCCTGGGGACGCACTTACAGGGAGGGCAAACTGGCCAGgtgggagTATGATGAGAGCTACTGTGATGCGGTAAAGAAGATGCCTCCGTACGACGCTGGTCCCAGACTGCTGGACGTCATCGACACGGCCATCTTTGATTACCTCATCGGCAACGCAGACCGACATCATTATGAGAGTTTCCAAGACGATGGAGGAGCCAGCATGCTCATTCTGCTGGATAACGCAAAGAGttttGGGAATGCAGCTCTGGACGAAAGAAGCATTTTGGCTTCTCTGTATCAATGTTGCATgGTGCGTATGTCTACGTGGAATAGGTTGAACCTGCTGAGGGCAGGGGCTCTGAGTTCAGCCATGAGGCAGGCCCTGACCTTTGACCCCATCAACCCCGTCCTGGCCGAGCCTCACCTGGCCGCCCTGGACAGACGTCTGTCTGGTGTCATAGCAACCATCCGGCAGTGTGTGGAGTCACAGGGCCCTGACAGCACACTGATAGAGGACCGCTTGAACCTGCCACACTCCtaaaggaggacaggagagagggatggaagagaggagagacctgTCCCATCCCTTGTggaggacaagagagagggatggatgagagaTGAGGGAAAGGAGAAGCTCTCACCCAAGGATCGAGAGAGAGGGTTGAGCCATGGTAGGAGCTGGAGGATAAACCCCCTCCCACACTCCCGCTCCAAGTCTCATGGCCTCCCAGAATGGGACAGGAAATGACTCCAGCAGCAGGAAGTGGTTTCCTCTACAAACTGTTTCCCTCCACACTAGAACACTTGAACCTAATGGGATCTATATCTGAGGAACTGTATCCCCAATGTCTCTCCTCTGccttctgcacacacacacaccttgtgccaaaccctccctctctcgtccAGTAATAACGAGGGAACCAAAGCCATAGGACTCAACCCAGCGGCAGTCAGGATAGCAGGGGTCGCTCACACAGCCATAAAACCCACTCCATGTGGACACAACACTCCCAGAAAAATCCACTGGACTGACAGTGGAGAGGGAGACTGGTTAAATGACCAAGGGAAATTTTGTGGTCAGTCTGATTGTGACTAACAAACAGACGTGTCTGTGTCCGAAATGACAccatatttcctgtatagtgcataAGGCTctagccaaaagtagtgcactgtatagggaggGAATTGTGTGCAATTTCAGAATCTGCCAACTGACTATGGATGTCTCATGATGCTCTATTCAATATATATTGTACTAGTTTTGGCCCCAGTTTCTCAGACCTTATTCCTATTTCTGAATTAAAAGCACTTTCAAAAGAGATTGTTCATTAAGCATGCTTTTTTTACTCCAGGATTCGACTTGATCTGGGTCTAAGAAACTGGCCAATGAGGTTTTAAAGGTTGGCTACATACTCTAGGGCTTTGGTCAAGACTAGTGCACTATTTTGGGAATAGGGTAGCCTTTGAGACATTACCAGCGTGTACATAACGAACTGTTGAATAGCATTACTGAGAGAGTATAATTATGAGAATTGTAATGTTAAATTAACCTAATTTACTGtcgtgtctgaatgtgtgtgccTGAATGTGTGAGCATGAGTGTAGGGCAGGAGTCGGTCACCCAAAAACGTCCCGCAATCAGTTTTTGGTCAAAAAAGACTGTAAAATCACAAGAATCctgcaaaaaaaatgtgtaatttaggaaatctgttcccaaataTTCTGACAAATCATAAGAGATGTTATCGTGTCAATCTAATCGAGGTATGacattattttcaaatacaatctctttgagcttagttgtggtcaatttgcagtgttcATTATTATGTTCAGCCCCCCCGAGCATCTGCTCCAACAAAAATCATCCGGCAGCTGTATCTAGTTGTCTATACCTGGGGTAGGGGGTGCCATACTCTGAGTATGCTACTGACGTTTTAGAGAGAATCTGGGACAGGGAGGGGGAAGATGGGAAGTTTGGGGCTTTATAGGAATGTAATGTTTTCAACATTAAaaattaatttttttaaa

Function


NR:

description
unnamed protein product

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process

KEGG:

id description
K20825 FAM20B; glycosaminoglycan xylosylkinase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021604208.2 True 3083 mRNA 0.49 9 71695892 71709750

Neighbor


gene id symbol gene type direction distance location
ralgps2 LOC106613957 coding upstream 8714 71552653 ~ 71687963 (+)
LOC110524493 ca163 coding upstream 151430 71542762 ~ 71544462 (+)
echdc2 LOC106584286 coding upstream 163927 71517672 ~ 71531972 (+)
LOC110524491 LOC106614023 coding upstream 179589 71507467 ~ 71516303 (+)
LOC110524490 LOC106613954 coding upstream 205454 71462777 ~ 71490438 (+)
LOC110522995 LOC106613964 coding downstream 323379 72033129 ~ 72034103 (+)
LOC100136696 LOC100136696 coding downstream 331398 72041148 ~ 72053264 (+)
LOC110524501 LOC106613965 coding downstream 359119 72068869 ~ 72097126 (+)
LOC110524502 LOC106613967 coding downstream 389008 72098758 ~ 72134274 (+)
LOC110524503 LOC106613969 coding downstream 426536 72136286 ~ 72167442 (+)
G434991 NA non-coding upstream 7404 71688184 ~ 71688488 (+)
G435016 NA non-coding upstream 77798 71616877 ~ 71618094 (+)
G434969 NA non-coding upstream 160583 71532515 ~ 71535309 (+)
G435024 NA non-coding downstream 626 71710376 ~ 71711413 (+)
G435621 NA non-coding downstream 13713 71723463 ~ 71724739 (+)
G435626 NA non-coding downstream 16936 71726686 ~ 71726994 (+)
G435716 NA non-coding downstream 138700 71848450 ~ 71849003 (+)
G435801 NA non-coding downstream 293133 72002883 ~ 72005590 (+)
G434829 NA other upstream 396992 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 472314 71218789 ~ 71223578 (+)
G434653 NA other upstream 735960 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 3481788 68212224 ~ 68214236 (+)
G436403 NA other downstream 793710 72503460 ~ 72504435 (+)
G436588 NA other downstream 1285749 72995499 ~ 72995735 (+)
G437327 NA other downstream 1746551 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 3053454 74729349 ~ 74770168 (+)
G438719 NA other downstream 3062259 74772009 ~ 74776469 (+)

Expression



Co-expression Network