si:dkey-86e18.1 (LOC106613962)


Basic Information

Item Value
gene id si:dkey-86e18.1
gene name LOC106613962
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71817545 ~ 71827015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978293.1
TTACACGTTAATTATGGCTCTTTGCAGTGCTAGCAAACATTGTTAGTATTATCTAGCTAACTAGTTAGACTTCCTATCAAGTTAATTTCGCTCTGGCAAGCTTGCTACTAGCCTATAGCTAGAAACACACACTGCCTTTAGCTATCAGCGAGCTAGCCTGTTCTTAacaagctagctagttacattATATATCTGGTCCACGATGATATGTTCGATTTGAGTATTTTTCAACGCCATGCAGCATTCCATTAATCGCTCCAAAAATTATATCCCCACCGATTTGATCAATAGTGTGCCACTGCAGCCCGCAATTCGAGCATTCCTGCCTTTGGCCATCTGCAGGAATGCCCCTCCACGTCATAAATTGACAGATTGAGGGAGTTTGCTAGTAGGGGAACTAGGAAACTAGGACATTTCCAACTTGCTAATTGGTTGTAGGTAATCACGTGCTGCGTTCAACAATTAGCAAATTGGAAATGTATGAGTTTTCTAGTTCTAGCACAAGAACGTGGCATTATCTTGCCTGGCCTTGTTAGTGTCTGAAAGTTGATTACATTCGATTTAGAACCAGACTGACTCCCGGGCATGAGCCATGTGACGTAATTAAGCATGAGTGGTAATTagtaggattctgtgttttcccatgcaaaagtgattgcttttgataaaaACGCTTTATCTAGTTAAAACATTCTAACATGTATGTAGGGAAATAAGTGGAATCAGAGTATGGGCATCCGTGGCAGGGAGAAGTGTCCATCCATAATTTATACAGAGGGCCGTATCAAAGATGTTCATGAACCTAGACCCAAACTGTCAACACTCAATTCAGCCTCATCCATTAAAAAGTGGATCCCAAGCATCAAGAATGAAATCGAGTATTATCTGCAGcagtcCCAGTTGTCTCACTACCCTGAGAGGAAGATAGCAGAGTTCCAGCTGAGCATCCAGGGGCTGGAGAAAGAGTATAAACGCTTCATCTGTAAACTGCAAGCCCTGGACCCGACCTGTAAACACCAGCCCTGGTCACCTAGAGCATACACCAAGAGGagtgcagacacacacatctcCCCCAACACCGCCAAGAAACCACGCGGTCTCCAGTCATGTGATCTGAGCAGGCCGGTGGGTGGAGCACAGAGTAACTGGGTCGTTAAAAGAAGTGATGCAACCTCAGCCTCTGAGAACAAGGTACACTTCCACCAATCAGGGACTTTCCTCAGCACATTTCCAGTTGATCTGACTAATCCCAGCCCAGAGTCCACCAATCCAGATCAGGACCAGCCCCTGAACTTTGATCGCACCCGTCTGGCGGTGGTTCTAGCTGGGTCCAGAGGCCCATTACAACCAGGGTCGTCTCACACTCAGAGCCTGGCCAGGGTGCTGCTCTCTGGGCTACCCAACCTCCACAGCTCCCCACTGGGAAGGGCCATTGCTGCACAGGACAGAGACgatacagggggagagagacgagaCAGCACAGGGGCAGGAGGAGCCCATAGCACCGTTAATGATGAAAAGAGCACCGTTAATGATGAAAAGAGCACAGGGCATGTACTGGGACTAGGCTGCTACTCATCCTCAGACGATGAAGCCGACACATGACATGGCTCTGTTATTAACACTGGATCCCTGATCACTACTCAGAACTCAATCTGCCATTCATGGACATCCCATGCTTCAGTACTTGTCCAGTTTGCCCTGAACTCCAATCAGCTGTTGTGAACCACAGGTTCTTTCTTTTCCTATTGTACATTATGTAAATACACAATAAAAAGGGAAATGATACAAAATA
>XM_036978292.1
TTGTATTTTTAGTTACACGTTAATTATGGCTCTTTGCAGTGCTAGCAAACATTGTTAGTATTATCTAGCTAACTAGTTAGACTTCCTATCAAGTTAATTTCGCTCTGGCAAGCTTGCTACTAGCCTATAGCTAGAAACACACACTGCCTTTAGCTATCAGCGAGCTAGCCTGTTCTTAacaagctagctagttacattATATATCTGGTCCACGATGATATGTTCGATTTGAGTATTTTTCAACGCCATGCAGCATTCCATTAATCGCTCCAAAAATTATATCCCCACCGATTTGATCAATAGTGTGCCACTGCAGCCCGCAATTCGAGCATTCCTGCCTTTGGCCATCTGCAGGAATGCCCCTCCACGTCATAAATTGACAGATTGAGGGAGTTTGCTAGTAGGGGAACTAGGAAACTAGGACATTTCCAACTTGCTAATTGGTTGTAGGTAATCACGTGCTGCGTTCAACAATTAGCAAATTGGAAATGTATGAGTTTTCTAGTTCTAGCACAAGAACGTGGCATTATCTTGCCTGGCCTTGTTAGTGTCTGAAAGTTGATTACATTCGATTTAGAACCAGACTGACTCCCGGGCATGAGCCATGTGACGTAATTAAGCATGAGTGGTAATTagtaggattctgtgttttcccatgcaaaagtgattgcttttgataaaaACGCTTTATCTAGTTAAAACATTCTAACATGTATGTAGGGAAATAAGTGGAATCAGAGTATGGGCATCCGTGGCAGGGAGAAGTGTCCATCCATAATTTATACAGAGGGCCGTATCAAAGATGTTCATGAACCTAGACCCAAACTGTCAACACTCAATTCAGCCTCATCCATTAAAAAGTGGATCCCAAGCATCAAGAATGAAATCGAGTATTATCTGCAGcagtcCCAGTTGTCTCACTACCCTGAGAGGAAGATAGCAGAGTTCCAGCTGAGCATCCAGGGGCTGGAGAAAGAGTATAAACGCTTCATCTGTAAACTGCAAGCCCTGGACCCGACCTGTAAACACCAGCCCTGGTCACCTAGAGCATACACCAAGAGGagtgcagacacacacatctcCCCCAACACCGgtaattCCTGGTTTCTCTCATCTGTAGCCAAGAAACCACGCGGTCTCCAGTCATGTGATCTGAGCAGGCCGGTGGGTGGAGCACAGAGTAACTGGGTCGTTAAAAGAAGTGATGCAACCTCAGCCTCTGAGAACAAGGTACACTTCCACCAATCAGGGACTTTCCTCAGCACATTTCCAGTTGATCTGACTAATCCCAGCCCAGAGTCCACCAATCCAGATCAGGACCAGCCCCTGAACTTTGATCGCACCCGTCTGGCGGTGGTTCTAGCTGGGTCCAGAGGCCCATTACAACCAGGGTCGTCTCACACTCAGAGCCTGGCCAGGGTGCTGCTCTCTGGGCTACCCAACCTCCACAGCTCCCCACTGGGAAGGGCCATTGCTGCACAGGACAGAGACgatacagggggagagagacgagaCAGCACAGGGGCAGGAGGAGCCCATAGCACCGTTAATGATGAAAAGAGCACCGTTAATGATGAAAAGAGCACAGGGCATGTACTGGGACTAGGCTGCTACTCATCCTCAGACGATGAAGCCGACACATGACATGGCTCTGTTATTAACACTGGATCCCTGATCACTACTCAGAACTCAATCTGCCATTCATGGACATCCCATGCTTCAGTACTTGTCCAGTTTGCCCTGAACTCCAATCAGCTGTTGTGAACCACAGGTTCTTTCTTTTCCTATTGTACATTATGTAAATACACAATAAAAAGGGAAATGATACAAAATA
>XM_021604212.2
ATCGTGTCACATGACTTGGCTAGACAATTATGTGACATTTTGTTGATGTGTTGCTGGTAAGGTTTCGAATGACAGAGGAGTGGGAATATATACTTATATATTTAGTAGTTTATGTTCCCTGTAGTGTAATTTACTTTCCTTTAGTTCATTGTTTAACCCCCACCCAATTGGTGACGACGATACACTTTTTTGTGTGTAACGTTCGCCAATATACCCAAAGAAGAAGAATGTCGCTGGTAAATTAGCGTGTCCCTCCCAAATGGCTAGAAACGAGGAGAAACAACTGGGGAAATTGAACAGATTATGGCTTCAAAAAGAAAGAGATGAGGGCCGTATCAAAGATGTTCATGAACCTAGACCCAAACTGTCAACACTCAATTCAGCCTCATCCATTAAAAAGTGGATCCCAAGCATCAAGAATGAAATCGAGTATTATCTGCAGcagtcCCAGTTGTCTCACTACCCTGAGAGGAAGATAGCAGAGTTCCAGCTGAGCATCCAGGGGCTGGAGAAAGAGTATAAACGCTTCATCTGTAAACTGCAAGCCCTGGACCCGACCTGTAAACACCAGCCCTGGTCACCTAGAGCATACACCAAGAGGagtgcagacacacacatctcCCCCAACACCGCCAAGAAACCACGCGGTCTCCAGTCATGTGATCTGAGCAGGCCGGTGGGTGGAGCACAGAGTAACTGGGTCGTTAAAAGAAGTGATGCAACCTCAGCCTCTGAGAACAAGGTACACTTCCACCAATCAGGGACTTTCCTCAGCACATTTCCAGTTGATCTGACTAATCCCAGCCCAGAGTCCACCAATCCAGATCAGGACCAGCCCCTGAACTTTGATCGCACCCGTCTGGCGGTGGTTCTAGCTGGGTCCAGAGGCCCATTACAACCAGGGTCGTCTCACACTCAGAGCCTGGCCAGGGTGCTGCTCTCTGGGCTACCCAACCTCCACAGCTCCCCACTGGGAAGGGCCATTGCTGCACAGGACAGAGACgatacagggggagagagacgagaCAGCACAGGGGCAGGAGGAGCCCATAGCACCGTTAATGATGAAAAGAGCACCGTTAATGATGAAAAGAGCACAGGGCATGTACTGGGACTAGGCTGCTACTCATCCTCAGACGATGAAGCCGACACATGACATGGCTCTGTTATTAACACTGGATCCCTGATCACTACTCAGAACTCAATCTGCCATTCATGGACATCCCATGCTTCAGTACTTGTCCAGTTTGCCCTGAACTCCAATCAGCTGTTGTGAACCACAGGTTCTTTCTTTTCCTATTGTACATTATGTAAATACACAATAAAAAGGGAAATGATACAAAATA
>XM_021604211.2
GTCCATCGTGTCACATGACTTGGCTAGACAATTATGTGACATTTTGTTGATGTGTTGCTGGTAAGGTTTCGAATGACAGAGGAGTGGGAATATATACTTATATATTTAGTAGTTTATGTTCCCTGTAGTGTAATTTACTTTCCTTTAGTTCATTGTTTAACCCCCACCCAATTGGTGACGACGATACACTTTTTTGTGTGTAACGTTCGCCAATATACCCAAAGAAGAAGAATGTCGCTGGTAAATTAGCGTGTCCCTCCCAAATGGCTAGAAACGAGGAGAAACAACTGGGGAAATTGAACAGATTATGGCTTCAAAAAGAAAGAGATGAGGGCCGTATCAAAGATGTTCATGAACCTAGACCCAAACTGTCAACACTCAATTCAGCCTCATCCATTAAAAAGTGGATCCCAAGCATCAAGAATGAAATCGAGTATTATCTGCAGcagtcCCAGTTGTCTCACTACCCTGAGAGGAAGATAGCAGAGTTCCAGCTGAGCATCCAGGGGCTGGAGAAAGAGTATAAACGCTTCATCTGTAAACTGCAAGCCCTGGACCCGACCTGTAAACACCAGCCCTGGTCACCTAGAGCATACACCAAGAGGagtgcagacacacacatctcCCCCAACACCGgtaattCCTGGTTTCTCTCATCTGTAGCCAAGAAACCACGCGGTCTCCAGTCATGTGATCTGAGCAGGCCGGTGGGTGGAGCACAGAGTAACTGGGTCGTTAAAAGAAGTGATGCAACCTCAGCCTCTGAGAACAAGGTACACTTCCACCAATCAGGGACTTTCCTCAGCACATTTCCAGTTGATCTGACTAATCCCAGCCCAGAGTCCACCAATCCAGATCAGGACCAGCCCCTGAACTTTGATCGCACCCGTCTGGCGGTGGTTCTAGCTGGGTCCAGAGGCCCATTACAACCAGGGTCGTCTCACACTCAGAGCCTGGCCAGGGTGCTGCTCTCTGGGCTACCCAACCTCCACAGCTCCCCACTGGGAAGGGCCATTGCTGCACAGGACAGAGACgatacagggggagagagacgagaCAGCACAGGGGCAGGAGGAGCCCATAGCACCGTTAATGATGAAAAGAGCACCGTTAATGATGAAAAGAGCACAGGGCATGTACTGGGACTAGGCTGCTACTCATCCTCAGACGATGAAGCCGACACATGACATGGCTCTGTTATTAACACTGGATCCCTGATCACTACTCAGAACTCAATCTGCCATTCATGGACATCCCATGCTTCAGTACTTGTCCAGTTTGCCCTGAACTCCAATCAGCTGTTGTGAACCACAGGTTCTTTCTTTTCCTATTGTACATTATGTAAATACACAATAAAAAGGGAAATGATACAAAATA

Function

NR:

description
uncharacterized protein LOC109902675 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978293.1 False 1795 mRNA 0.46 5 71817545 71826630
XM_036978292.1 False 1834 mRNA 0.46 5 71817545 71826642
XM_021604212.2 False 1346 mRNA 0.48 5 71817545 71827011
XM_021604211.2 True 1377 mRNA 0.47 5 71817545 71827015

Neighbor

gene id symbol gene type direction distance location
faslg LOC106613961 coding downstream 24626 71781681 ~ 71792919 (-)
angptl1a LOC106613958 coding downstream 156081 71621173 ~ 71661464 (-)
zyg11 LOC106613955 coding downstream 274802 71532452 ~ 71542743 (-)
LOC118964746 NA coding downstream 364284 71453146 ~ 71453261 (-)
LOC110524487 LOC106613951 coding downstream 377427 71435035 ~ 71440118 (-)
jun jun coding upstream 4626 71831641 ~ 71833770 (-)
prdx6 LOC106584278 coding upstream 195711 72022726 ~ 72032047 (-)
LOC110524500 NA coding upstream 232556 72059571 ~ 72060414 (-)
LOC110522996 NA coding upstream 405149 72232164 ~ 72235211 (-)
LOC118964719 NA coding upstream 444861 72271876 ~ 72272749 (-)
G435640 NA non-coding downstream 76732 71730069 ~ 71740813 (-)
G435624 NA non-coding downstream 91283 71726043 ~ 71726262 (-)
G435610 NA non-coding downstream 107882 71708032 ~ 71709663 (-)
G435608 NA non-coding downstream 121005 71695821 ~ 71696540 (-)
G435901 NA non-coding upstream 44296 71871311 ~ 71871524 (-)
G435997 NA non-coding upstream 205374 72032389 ~ 72032606 (-)
G436194 LOC106613965 non-coding upstream 257135 72084150 ~ 72084631 (-)
G436199 LOC106613965 non-coding upstream 265702 72092717 ~ 72096564 (-)
G436204 NA non-coding upstream 296791 72123806 ~ 72126279 (-)
il23r LOC106613945 other downstream 530553 71285725 ~ 71308015 (-)
LOC110524478 LOC106613944 other downstream 586956 71226012 ~ 71242283 (-)
G435176 NA other downstream 748658 71068025 ~ 71068887 (-)
G435234 NA other downstream 825747 70990892 ~ 70991798 (-)
G433683 LOC106613912 other downstream 2292755 69486406 ~ 69524790 (-)
G436172 LOC100136696 other upstream 213947 72040962 ~ 72121697 (-)
G436830 LOC106605384 other upstream 761269 72588284 ~ 72588576 (-)
G436842 NA other upstream 789281 72616296 ~ 72616944 (-)
G436847 NA other upstream 845139 72672154 ~ 72672826 (-)
G436873 NA other upstream 947546 72774561 ~ 72775868 (-)

Expression


Co-expression Network