LOC110524510 (LOC106613977)


Basic Information

Item Value
gene id LOC110524510
gene name LOC106613977
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72362852 ~ 72377582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604235.2
ATGCTGGGTTAAAATCTCAAACATCAAAACTCGTTGAGCGAAAACGATTTCCATTCTGAAAAGGCAGGGTCCTCATATCGTGATTGCCATCGAACGGTGAGCTGGTCATCATAAATTACGTTTTGACGAACTGAACTAGCACTTATCGAGAGCTTGTCTCTTTACGGAGTCAAAATCAAGAGTTGAAGGCAGCGGGAGACCATGGACGTGGCCCGGATGTTACTGTGCCTGTTCTCGGTGCTGGTGTCTGAGAAGTTCCTGGTGGCTGCGTTCTCCCAGAGCCTGGTCAGCGACTTCACATTCACACTCCCCGCAGGGCGGAAGGAGTGCTTCTTCCAGACCATGAAGAAGGACGCGTCGCTGGAGATAGAATATCAGgtGTTGGACGGAGCCGGTCTGGATGTTGACTTCTCCCTGTCGTCTCCTACTGGACACGTTCTGTACAGCGAACACCGCAAATCAGACGGAGTATACAcTGTAGAGACGGAGGATGGAGACTACATGTTTTGTTTTGACAACTCGTTTTCTGCTGTGTCGGAAAAGATCATCTTCTTCGAGCTTCTCATGGACAACATGGAACAGGAAGGGGAGGAGCCAGAGGACTGGAAGGAGTACGTCCATGGGACCGACATGTTGGACATGAAGCTGGAGGACATCATGgacaccatTAACAGTGTTAAAGCCCGGCTGGGGAAGAGCCTTCAAATACAGACTGTGCTCAAAGCGTTCGAGGCTCGCGATCGCAACCTCCAGGAGTCCAACTACGACCGGGTCAACATGTGGTCCATGACCAACATGCTGGTGATGATGCTGGTGACGGGAGTGCAGGTCTACCTCATCCGTGCCCTGTTTGAGGACAAGAGACACGCGCGCACGTAACACCCCGCCCACTGGGAAGGGCCAGGGAGAGACGGACAGCTCTGTCTACACCTGCCAGCCAATAGCGAGCAGGACTGTTGGTGAAGATGAGATTGTAACTCATCAGATTTTTATGtacaacactcacacactcatacgTTACATCACACATCCTTACAGACACAAATGCCATACCTGTCCAGTCTCttcctctgctctgttctcctctgtctaGCTGCTGTTGCTCAGAGGGTCTGTGTTGGTATCTGCTCTATCTATCTAATAATCAGTGGCGGGTGAAACACCAGCCAGACCTTCAGTTATTGGTGTTTAAAAGTGAGCGTAAATGAACAAGTATTTCTAATTTAATATGGTAATGTGACCTCTAAACTTTTTCTTCCAGACACTGAGGTGTGtgactgtcctgtctctgtgtcacgTCTTTCGAGGTCTTCCAGTATGTGACCTGTGAGTCATGTTGCGAAACACTTTATTGTAGAGTAGGTTATTGATACGGCCTTTcaacctctcactctctttcaaaAACACACTCATTCTCACACAATCtcttactcacacacactcaaacccacACACTTCTTCATTGAAACCGCTGCTGTCTGCCAGTTCCAGCAAATGGAGAAGTGGAGTAGGGGAAAGGGAATGGTTCCATATGTAACTCTCTAAATCACGGCTGTTCTCTTCTACTCCCTCCTTTTCATCCTCCTATAACTCTACTCTGTCCTGATGGTCTGTCAGACTTAGTGCTGACAGGCGAGTCGGATTTCAGTCATACTGGCAGAAGCGAAATGGAACCTGCCCTGCCCctttcgctctctttttctcttgtgACAGAAATAGAATGCTATCTAACATCACAGCAATCACACGCTGCACCTGGGGGGTAAAAGAGGCAGGGAAGGTTGTGGGAAAAGGGTTGCGGGTGACTGAAGGAGGTGGGAGTGGTTGGGAAATCAACTAATTGACCGTTATTTGGctttattttattgttttgtagCTCTGTCATATACGCACTTGGACAAACATACAGATGTGGTTGTTGATGAGTAACACCACACCGCCATCTTGTGGCTGGACACCAAACTGCTCATGCAAAACAACGTGACTTTTTTCACCTCTCGGACTGAAGGGTATACAACAAAGCATGCTCAATGAAATAGCCAGGTAACTTTGATAAATAATCAGATAGCTATTGATTTTCTGGTTAATTTAAGAATGCTAAACTCTAACGAACAAAAAACTCAATGCTTTGAATCTACGACAAGATGTTTAGGAGAAGGTGTCTAACCTTATGATGGAACGAGGagagtatattttagcaataaggcctgagggggtgtggtatatggccattataccacggctaagggatgttcttaagcacgacgcaacacggagtgcctggatacagcctttagccgtggtatattggccatataccacaaatccctgaggtgccttattgctaaaatatactctCCTCGTTCCATCATAAGGTTAGTAAAATAGACACCTTCTCCTAAACATCTTGCCTGTAGGTTCAAAGCATTGAGTTTTTTGTTCGTTAGAGGCCATCATTGTCTTGTGCAGAAAGGAACAAAAAAGTTGGAGAAGAGCATCAATGACATTCTATAAATTAAAAATATTCATTTTATTGATTAATCTCCCATGGTGATGCTTGCTTGAGCATCAGCtaaaatactttttaaaaaaaaaatgtaaatacttaCTTTTATATTGGTTACCAACGTAGTAATTCGACCAGTAAAAATTaaggttttgtcatacctgtggtatatggtctgatgtaccatggctgtcagccaataagcattcagggcttggaccacccagtttataatctgaGATATACAGACTAATGTTCTGTATATGTAAATGTGTCAAATTAAAAAAGTATACTTTTCTGAA
>TU493748
AAGGTTAGTAAAATAGACACCTTCTCCTAAACATCTTGCCTGTAGGTTCAAAGCATTGAGTTTTTTGTTCGTTAGAGGCCATCATTGTCTTGTGCAGAAAGGAACAAAAAAGTTGGAGAAGAGCATCAATGACATTCTATAAATTAAAAATATTCATTTTATTGATTAATCTCCCATGGTGATGCTTGCTTGAGCATCAGCtaaaatactttttaaaaaaaaaatgtaaatacttaCTTTTATATTGGTTACCAACGTAGTAATTCGACCAGTAAAAATTaaggttttgtcatacctgtggtatatggtctgatgtaccatggctgtcagccaataagcattcagggcttggaccacccagtttataatctgaGATATACAGACTAATGTTCTGTATATGTAAATGTGTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106591608 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604235.2 False 2808 mRNA 0.45 4 72362852 72377582
TU493748 True 410 lncRNA 0.34 1 72377147 72377556

Neighbor

gene id symbol gene type direction distance location
LOC110524507 LOC106613976 coding upstream 92986 72239918 ~ 72269866 (+)
mettl13 LOC106613973 coding upstream 123338 72235213 ~ 72239514 (+)
myoc LOC106613972 coding upstream 134671 72219897 ~ 72228181 (+)
LOC110524504 vamp4 coding upstream 153191 72175117 ~ 72209661 (+)
LOC110524503 LOC106613969 coding upstream 195410 72136286 ~ 72167442 (+)
LOC110524509 LOC106613979 coding downstream 200 72377782 ~ 72393450 (+)
LOC110524511 LOC106560226 coding downstream 95535 72473117 ~ 72830580 (+)
LOC110524512 NA coding downstream 451734 72829316 ~ 72830580 (+)
LOC110524513 LOC106560217 coding downstream 456315 72833897 ~ 72851314 (+)
LOC110524516 LOC106560230 coding downstream 497603 72875185 ~ 72918731 (+)
G436069 NA non-coding upstream 64383 72296246 ~ 72298469 (+)
G436051 LOC106613974 non-coding upstream 77595 72284643 ~ 72285257 (+)
G436059 NA non-coding upstream 78383 72280194 ~ 72284469 (+)
G436049 NA non-coding upstream 102145 72256929 ~ 72260707 (+)
G436017 NA non-coding upstream 146465 72212395 ~ 72216387 (+)
G436155 NA non-coding downstream 49803 72427385 ~ 72429970 (+)
G436168 NA non-coding downstream 79120 72456702 ~ 72457021 (+)
G436368 NA non-coding downstream 85499 72463081 ~ 72463317 (+)
G436372 NA non-coding downstream 89634 72467216 ~ 72467416 (+)
G436375 NA non-coding downstream 93333 72470915 ~ 72471118 (+)
ralgps2 LOC106613957 other upstream 675683 71552653 ~ 71687963 (+)
G434829 NA other upstream 1063952 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 1139274 71218789 ~ 71223578 (+)
G434653 NA other upstream 1402920 70959610 ~ 70959932 (+)
LOC110524423 LOC106613476 other upstream 4148748 68212224 ~ 68214236 (+)
G436403 NA other downstream 125878 72503460 ~ 72504435 (+)
G436588 NA other downstream 617917 72995499 ~ 72995735 (+)
G437327 NA other downstream 1078719 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 2385622 74729349 ~ 74770168 (+)
G438719 NA other downstream 2394427 74772009 ~ 74776469 (+)
G436131 NA non-coding upstream 7152 72369598 ~ 72369995 (+)

Expression


Co-expression Network