LOC110524516 (LOC106560230)


Basic Information

Item Value
gene id LOC110524516
gene name LOC106560230
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72875185 ~ 72918731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978327.1
GCTAATTACTGAGccgtagcagagagaagagaagaaggctGAGCCAAACTgctgaggaggagggtgaggaggaggaggagaagaggaagggttGATAAAActaccatatctctctctctgcgctcagAGCGCTATTCTCTGCCAGGCTTTgaagctgacagagagagaggagacagaagcagGATTCATTCATCATAGCGCCTTTACAGAAGTTTACCATCCCAAATCGTGAACAGGACAGACGAAAGGTTTTAATCCAGTATCTGAAGAGGCGATTTATGGTGAAAAGTATGCTTTTTTAAAGTAAAATATTTGGACAGACGAGGCATCGCATCGTTGCAGCGCTGATACAAAGTTTGCAGGTCCTCTACTTAGTTGGGAAGTTCGTTTCCCATAGTTGGCTTCTGAGTGACATCTGCTTCTTCTCGGCTGGAATCCTTGACGGACTAAATAACGTGATTTAGATTGTTTGGAGAGCTGGTGGAATTTTAACTGGAGACGGAGTTCTTCCATGCAACAGTTGGCTATTTTGTACAAGTAAGCCATGGCACAACAGACCAGAAACGGAGGGACCTCATTGAACAACAACGGCACCGATATCACCAAGAGGAAGCTGTTGACAGGACTGGACCTCTTCTGCCTGCTACTAGTCATGCTGCCCAGCCTTGCTATCCACCGCACCTCAGTGCATCCGTACCAGCGTGGATTCTACTGCAGTGACGTCAGTCTGCGTTACTCCTACAAGAGCTCCACCatcccctcctctgtcctcactgGCGTGGGGCTCACTCTGCCCAGTATGGCCATTGTTATAGGAGAGTGTTACCGGATTCACCATCTGAGTGAGGGATCTAAGTCTTTCATTGGGAACCCTTATGTCTCATCTCTCTACAAACAGGTTGGAGTGTTTATATTTGGCTGTGCCATTAGTCAGTCGTTCACAGACATCGCCAAGGTGTCAGTGGGCAGGATGAGACCGCACTTCCTGGACGTGTGTAACCCTGACTGGTCAGCCATCAACTGTTCCCTCGGATATATCACCTCATACACCTGTAAGGGCCCTGAGAGCAAAGTACAGGAAGCCAGGAAATCCTTCTTCTCAGGACATGCCTCCTTCTCCATGTTTACTATGCTCTACCTGGCtttTTATCTCCAGTCCAGGTTCACCTGGCGAGGTGCCCGTTTGCTCCGTCCCCTCCTCCAGTTCACGCTGCTGATGATGGCATTCTACACCGGCCTATCACGCGTCTCCGACCACAAGCACCACCCCACAGACGTACTGGCCGGCTTTGTACAGGGCGCCCTGGTGGCCTACTGCataGTGTTCTATGTATCTGACCTGTTCAAGCCGCAGGAGAAGCCTGCctcgccccctccctcccccatcaaGAAGGAGCTCCTCCCCCCTGCTGACATCATCGAGCGgaacaaccaccacaacatggTGTGAGACAGGCCCCTTCCCCTGACCGAGGAGCCTATCACAGCATTTCTCACCGCCCATTGGACAGTAGAATGTAGCGACCAGAGAGACTATGGTCGCGTCTCAAATCACACTCCGCTttttatatagtgcactccttatCACACCCGCTGgtgcaaagtagtgcactacttagggagtAGTGCTTTATTTGAGTCCTGCCCTGCAGAAACCACTATCCAGACTCTTTACTACTATTGTTATTACTACTACTCTGAGCCCAAGTTAGAGCAAAAAGAAAAGAATCAAAAGCTAAAAGACAAGAagttaaagacagacagacagacagacagacag
>XM_036978326.1
TGAGccgtagcagagagaagagaagaaggctGAGCCAAACTgctgaggaggagggtgaggaggaggaggagaagaggaagggttGATAAAActaccatatctctctctctgcgctcagAGCGCTATTCTCTGCCAGGCTTTgaagctgacagagagagaggagacagaagcagGATTCATTCATCATAGCGCCTTTACAGAAGTTTACCATCCCAAATCGTGAACAGGACAGACGAAAGGTTTTAATCCAGTATCTGAAGAGGCGATTTATGGTGAAAAGTATGCTTTTTTAAAGTAAAATATTTGGACAGACGAGGCATCGCATCGTTGCAGCGCTGATACAAAGTTTGCAGGTCCTCTACTTAGTTGGGAAGTTCGTTTCCCATAGTTGGCTTCTGAGTGACATCTGCTTCTTCTCGGCTGGAATCCTTGACGGACTAAATAACGTGATTTAGATTGTTTGGAGAGCTGGTGGAATTTTAACTGGAGACGGAGTTCTTCCATGCAACAGTTGGCTATTTTGTACAAGTAAGCCATGGCACAACAGACCAGAAACGGAGGGACCTCATTGAACAACAACGGCACCGATATCACCAAGAGGAAGCTGTTGACAGGACTGGACCTCTTCTGCCTGCTACTAGctGGCCTGCCCTTCCTGATAATAGAGTCTAGCACCATACAGCCGTACCAGAGAGGTTTTTACTGTTCTGACGAGTCCATCCGGTACCCATGTAAAAATGGAGACACTATCAGCGATGCTGTGCTCTGTGCTGCTGGCATTCTTATTGCCATCCTCTCTATTGTTATAGGAGAGTGTTACCGGATTCACCATCTGAGTGAGGGATCTAAGTCTTTCATTGGGAACCCTTATGTCTCATCTCTCTACAAACAGGTTGGAGTGTTTATATTTGGCTGTGCCATTAGTCAGTCGTTCACAGACATCGCCAAGGTGTCAGTGGGCAGGATGAGACCGCACTTCCTGGACGTGTGTAACCCTGACTGGTCAGCCATCAACTGTTCCCTCGGATATATCACCTCATACACCTGTAAGGGCCCTGAGAGCAAAGTACAGGAAGCCAGGAAATCCTTCTTCTCAGGACATGCCTCCTTCTCCATGTTTACTATGCTCTACCTGGCtttTTATCTCCAGTCCAGGTTCACCTGGCGAGGTGCCCGTTTGCTCCGTCCCCTCCTCCAGTTCACGCTGCTGATGATGGCATTCTACACCGGCCTATCACGCGTCTCCGACCACAAGCACCACCCCACAGACGTACTGGCCGGCTTTGTACAGGGCGCCCTGGTGGCCTACTGCataGTGTTCTATGTATCTGACCTGTTCAAGCCGCAGGAGAAGCCTGCctcgccccctccctcccccatcaaGAAGGAGCTCCTCCCCCCTGCTGACATCATCGAGCGgaacaaccaccacaacatggTGTGAGACAGGCCCCTTCCCCTGACCGAGGAGCCTATCACAGCATTTCTCACCGCCCATTGGACAGTAGAATGTAGCGACCAGAGAGACTATGGTCGCGTCTCAAATCACACTCCGCTttttatatagtgcactccttatCACACCCGCTGgtgcaaagtagtgcactacttagggagtAGTGCTTTATTTGAGTCCTGCCCTGCAGAAACCACTATCCAGACTCTTTACTACTATTGTTATTACTACTACTCTGAGCCCAAGTTAGAGCAAAAAGAAAAGAATCAAAAGCTAAAAGACAAGAagttaaagacagacagacagacagacagacagacagacagacagacagacagacagacagcagtgcaGAGCCGTTGAAACGAACACATTGTATCCACACAAAGGggaaataaatgttaaaaaataaatgaatgaatgaaggagAAAAAGACAGACATATCAGCTGTCTCTGTCAGTGGCCTTGACATAGGATAACAACTTCCTTAGTAATAGGAACTATATTACTGCAATATTACTAGCACATGACACATCTAGTATATGAGTAACAATATAGAGTAGAATAACTTACAGCACTATAATCCAGTTCACTGTCGATTATCACCACTCACCACCGGATGGACCAGCTATAAGAACGCTTGTTGATGCTTACGTAGAAGGTTGAAGTTAACCTGTAACTAGTTAACTTGTCCAATGCCAGATACTGACTACTACAACAGAAGGAAGAGACCTGGAGAGGAACCTGACACactttaaggactcttggaataTTTGTCCAAATGACGATAAAAAAAGATCCTTATAAAAATCGAATGAAATCCACCTCTAGCTTCTAACTCCAGGTATAGAAGTTTAGAATAGTCTAGTTGTCAGCTCAACAAGCCTCTTATAACTGTCCCTTTGAGTAGTCTAACCTGAGATGATGCTTTCTGAAAGAGGGGGGTGAGATGAAGAAGGGTTTAAGGAACGATGGAGGGTAAAGGAGGGATATTGATTAGTATTAGTTTGGGGGTGGTGGGGAAGAATGGAGGGGGGGAGGTAAATATCTCTCAGCCACCTGTCACTCGGTGTGGGGGTGTGGCTGTGCCACACTGCCATCTGATTAGCTGCATAGGTGGAGGTGTGGTCTGTTGCCATGGAAGTAGGGTTGATTGACAACTAAGCTGTCACATAATTATGGGATAGGGGCTCTTTCCGCTGGCAGGGAGGGGCTCTGGCCCACCCAATCACTCATtggcagtatgtgtgtgtcctgtgtgtcactgtgtgtctgtgtctgtgtgtgtgtgtccactctgtgtgttttgtgtgtgtgatgtgttagGGTTTGCATGTCTTGTGTATTTGTGAGCgtgattgtgtatgtgtctgtgtgtgttttgattaATCCTCATGGTAGTGTGTGTAGCATgaacccccctcacacacaccattGTCTGTGGCAAGAGTGTGTACCACTATGTTTGCGTctgtttgtgtacatgtgtgttaGAGAGGGCCAGGGGTGGAGGGCTGAGACCCTGTCCGGAGAATATTAGAAAACTGTGGAttgaatatttttattttctGCTATGATGGATCTTTAACATGTTCAGTGCTAGTCCAGTAATGTAATTAACGAACCTATCCCCATCAGCCATTTCATTTTACAGTTCAGTTTACTTAGGGGAAATCTCAAGTGGCCCACTATTGCCtatagcagggtttcccaaactcggtcctgggcccCCCTGGGggtgattcaaataaccaactcctcATCTAGCTTTGATTTATTTGAATcagcggtggggggggggggggggggggggtcaggtcaCAGGAATGCGGGACCCTGCCCCGTGGAATGCTCTTCTTGCTAAAATAAGTGCACTagatacggaatagggtgccattttggacagagCCTAAGACATCTTCTCAACATCACCACTTTCTAATCACGTTTAGTCCGTCCTATCATTTAAGAAAACTATTTTCTTTTCattttataaatatataaataatgtaTAGTTCACTAAAATTAACTGTGTAAGATATAATTTCTTATGTTTAGCTATTGTCCACTATGAAACCACAACCTGTGTTATCTACCAAGTGCTGCTTAAAAAGCATTGATTGACAGATTTTTGTATTTAGTTAACTAAAATATTGTAGATTTGTGATAGTATGTTTTTAATACATGTTGAAAACAAACACACCTACAAGTTTATTAAAATTCACTATCAGTATTTTTGTATTGTCTCattttgtataaaataaatattagCAAAAAAAATGTCCTGCGAAATGTACTTAGCTCTACTACATGTGGTTTTAAATAAAAAGCCCATTATGAACACAA

Function

NR:

description
PREDICTED: lipid phosphate phosphohydrolase 3-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978327.1 False 1780 mRNA 0.50 7 72875185 72916702
XM_036978326.1 True 3803 mRNA 0.45 7 72875194 72918731

Neighbor

gene id symbol gene type direction distance location
LOC110524513 LOC106560217 coding upstream 23871 72833897 ~ 72851314 (+)
LOC110524511 LOC106560226 coding upstream 44605 72473117 ~ 72830580 (+)
LOC110524512 NA coding upstream 44605 72829316 ~ 72830580 (+)
LOC110524509 LOC106613979 coding upstream 481735 72377782 ~ 72393450 (+)
LOC110524510 LOC106613977 coding upstream 497603 72362852 ~ 72377582 (+)
LOC110524519 LOC106560231 coding downstream 89126 73007857 ~ 73052550 (+)
LOC118964641 NA coding downstream 118548 73037279 ~ 73040402 (+)
LOC110522997 dhcr24 coding downstream 174919 73093650 ~ 73103407 (+)
LOC110524521 LOC106560235 coding downstream 194589 73113320 ~ 73118094 (+)
mdp1 mgdp1 coding downstream 207901 73126632 ~ 73129571 (+)
G436516 LOC106560227 non-coding upstream 14169 72858806 ~ 72861016 (+)
G436473 NA non-coding upstream 126684 72746163 ~ 72748501 (+)
G436462 NA non-coding upstream 172735 72701870 ~ 72702450 (+)
G436461 NA non-coding upstream 184119 72690824 ~ 72691066 (+)
G436460 NA non-coding upstream 185929 72688566 ~ 72689256 (+)
G436592 NA non-coding downstream 79457 72998188 ~ 72998413 (+)
G436595 NA non-coding downstream 82047 73000778 ~ 73000997 (+)
G436606 NA non-coding downstream 137169 73055900 ~ 73056733 (+)
G436610 NA non-coding downstream 146769 73065500 ~ 73065729 (+)
G436613 NA non-coding downstream 154585 73073316 ~ 73073692 (+)
G436403 NA other upstream 370750 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1188016 71552653 ~ 71687963 (+)
G434829 NA other upstream 1576285 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 1651607 71218789 ~ 71223578 (+)
G434653 NA other upstream 1915253 70959610 ~ 70959932 (+)
G436588 NA other downstream 76768 72995499 ~ 72995735 (+)
G437327 NA other downstream 537570 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 1844473 74729349 ~ 74770168 (+)
G438719 NA other downstream 1853278 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 2252573 75161317 ~ 75178287 (+)

Expression


Co-expression Network