LOC110524525 (sel1l3)


Basic Information

Item Value
gene id LOC110524525
gene name sel1l3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73191132 ~ 73202694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604254.2
TCCACCTGCAGAGCAGGTGCTACCACATAGCTCCACCTGTATCACGGAAGTGAGGAATAACGAGGCAACGCAACAGAAAGCCGTATTTGGATTAATAACATTGGATTTATCACATTAATACAACTATAACCACGATTTGAACATTAAATAACATTCGATATAGTCCTAAAAAAATTGGGAAGACAGAATTCAAGGATTGTATGAAATGCACACTTGAAAATGAAAGTTTTTGAAAGTTTTAACCTTTGTGGACATGCTGTCACCGTTGTAATTGTTTTGTCGCTGGCACTATGTGAGTCTTCATCCCACATCACGCCTACCTCCTCATCTCCAGCTGGAGATAGCTCAGTGCTGCATGGTGATTCCATACAGTTTGACTTGGTCCCAGACATAGTGATGAATGGCTCAGTGGTCCAAGTTAGTTACCAGTGCTCCAGGGCCTGTGAGGTGGGAGTGGAGGTGATGGTCCCCACACAGACCAAGACAGGAGTGGCTGTCTTCAGGAGGAGATGGACCAACCACAGACGCCTCCATGTCCCCAGGACTCATCCAGTGAAGCTTTGGTTCCCTCCAGGCATGGCCTACAGAAAGGACCTCTTCATGAGGCGCACATTGGACGTCCATAATGTGATGGTTCGAGCCTGGTTGGACCACCTTGAGCAAGGCAAAGGAGACAAAGGCCATGTGAATAGGACCAGCACATACAATGGGTCCCTGGTGAGGACGTTCAAAGTGCTTCAGGCAGTACTTCCCTCTGAGCGTCCAGCTAGACTTTATCCTGGGTGCCCCTCCTGGATGGCTGATCTTATGTGGCAGCTGACCAGAGACAGAATCCGCCAGTGCCCACATGAGTCAGACACTGTGGATATATTGACATTTCCAATGGTTAGCACTGGAAAGAGTTTTGGAGTGATTCGCAAGATCCACCCTTTCATCAACAGAGATCTTGAGAGAGATCGTGTCCTCACTGTGGAGCAGCCCAGTATCACAGTGTCTATATGGGTCTTTCTGGTGCAGTGGTGTGACAAGAAACTGTGTGGAATCATCCATCATGTTGATCAGAACAGCAAATACGACACTCCTCTGATGCAGCTCACTAACACAGGAGATATCATAATTCAGGTTCGTGTGGTGTCTGGGGGAGATAAGGCATTCAGAGCCCACACAGCTCTGCCTCTCTGGACCTGGATCAGACTAGACTGCTTCATACAAGGCTCTAAGGTGACACTGCAAGTTAAACCTGAAATGACATCGGGAGGAATGGTGGGGAACACACACATATTTGACTTTCAGAGTGACATCCATTACAATGACACTGGTGGATACTTTGTGATTGGAGGGGGCAGGTTCATGCCAGGTTTCCATGGCTATTTTGGACCAATCAAATACTATCGTTTGGGCACAGAAAAGGTGATCAACTTCCTTTCCCCTGTCAAGACATTAGAGGGCCTGGAAAAGACTCACAGAGAGTGTGATGTTATCAGAGAAGTCACTGCAGCCTTTCTTCAGGCTGTGACACACAACCAGGAAGTCTTTATGACAGGTTTGTGTCACTCTCACTACATCAGTTTATGGAGAAGGTTTGGACAGAATACATGTAGGCAGACATGGACCTGGGAAGCACAGAAGAAGCACCGTGTACTTTTCACCTTCTTAGAGACCCAGCTAAAGGACTTCACCACAGGAACTAAGAACAGGAGAACACCCCTTTACCTTGGAAGCAGATTGTTTGAGCATGTAGTGAATAGACTGTCCAATAGAGGAAGCAACCAGATggactccaccaccaccacctcctccctgaTAGCCCTGCTGCAGATGTCCTCCTGCTATGGCTACCACCACTCCTCCTTGCTGCTCTCCACCATCCACCTGGCTGGCCTGGGGGCCCCTGTGGACCAACAGCAGGGTCATGTCTACAGTCTGATTGGTGCACTGGGAGACAACCGTTTAGCCCTCATGCATTTgggctacaaacacacacaaggaaTTGACGGGTTCCCCAAAGACTTTGACATGGCGTACAGTTACTACTCCAATGTTGGGGCACAGACCAGTATTGACCAAGGCCGGGTACTGGGGAATCAGCAATATATCACGGAGCACATTCTTATAAGCAACGAGGACCACCTGAACAGCCTAACTCATGAGACAGGTGACACCTTTCAGTATATCAAACTTCAAGCTGACAGAGGAGACGTTGAATCACAGAAACTTCTAGCAAAGCTTCTATTCTGGGGTCAAAATGGTGTCTCTAAGGACGTTGGGAGTGCAGTTAAGTGGTATGCTAAGAGtgccatggagctggaggatcCTGCAGCCATGTATGAGTACTCTATCTTATTATTTAAGGGACAGGGGGTGAAGAGGAACATGACTCTGGGTCTCCAGATATTGGAGAAAGCTGCAGCCAAGGGTTCAGTCCAAGCCTTGAATGGGCTAGGGTGGTATTACAGCACCATACTGAGAGACTACAAGACTGCCTACAAGTACTTTGAACAGGCTGCCCACAATGGCAGTCATGACGGCATGTTTAACCTGGGTGTGTATCACTTAAATGGGAAGAACCCACACAACCCAGAAAAGAACGAGACTGCTGCGTTTCATCTCTTCCTAAACTCCTCCCTCTATGGTCACGTGGACGGGGCGGTGGAGGCGGCCTGGTACCTGTCCACAGGAAACCTGGAGGGGGTCTCCCGGGACACAGAGAGGGCTGTGATCATGCTGAAACAGATCTGTGAGCAGAATGGTTACCTGGGATACATCGTAAGAGAGGCTCTCCAAGCCTACCTCCAGGGCTTCTGGGGCGAGGCTCTGGTCAGGTATGCCCTTGCCGCTGAAACAGGTTTGGGAGTGGCCCAGAATAATGTTGCCTACCTATGTGAGGAGTTGAAGCAGAGCTATGATTGTCAATGGAGGTATTATAACCATTCCACAATGAACTATGCCCCACATGATTCTGGTTTGCTGAAGATGGGCGACTACTACTACTCAAGCAGCAGGCTAGGAGCTGTTGATCAGGCTATATCACTGTACAGCAGAGCAGCCCTTGCAGGCAGTTCTCAGGGAATATATAAGTTGGTGGTTTTGGCAGAAGAGGGACATGATGTCCCATTGATCATCAGAGACAGATTAAACATATCAATTCATGATGGGCTAGACATTGTGGTGGAGAGACTCTTACAAAGATGTGTAGAGTTGGATGAAGATAAGGATCTGACACCATGTACTTTAGCTCTACTCAGAGTCCGCATGGGACAATCCTGGAGAAAAATGACTCAAGACCCTATACAGCTGTCACTGGTTTATATATCTGTTGTTACTCTCATCATTGCTCTGATTACTGTGCTAATCCAAAGTGCTCTGGAGTGTCTCCAAGTGCACATCCCAGCTAGACAACGTAGGCAGACCACTGACCGTGCAGTAgatgacaggacagggacatCCCCTGTCAATCAAGCAGAAGTCAATGGGAATGGACAGCAGGATCAGAATGACCCCATCAGGAGAGAAGACAGAATGTCCAGAACTGTTAGAATGGCCCAGGGTCTATGGTCCATTTTActgagggatggacagagagtgCAGCAGACAGTTGACCTGGCTGTTACTGTGTCTggggtgtgtctctgtgtcctctGCACATTGATCCTCCATCACCTGCTCTGATAGTTGTCTTACACAGCACAGGAAATGCCTGAGACAGAA

Function

symbol description
sel1l3 Located in nucleoplasm.

NR:

description
protein sel-1 homolog 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604254.2 True 3708 mRNA 0.48 24 73191132 73202694

Neighbor

gene id symbol gene type direction distance location
mdp1 mgdp1 coding upstream 61561 73126632 ~ 73129571 (+)
LOC110524521 LOC106560235 coding upstream 73038 73113320 ~ 73118094 (+)
LOC110522997 dhcr24 coding upstream 87725 73093650 ~ 73103407 (+)
LOC110524519 LOC106560231 coding upstream 138582 73007857 ~ 73052550 (+)
LOC118964641 NA coding upstream 150730 73037279 ~ 73040402 (+)
LOC110524528 cpeb2 coding downstream 283831 73486525 ~ 73513495 (+)
LOC110524529 LOC106560251 coding downstream 312249 73514943 ~ 73524397 (+)
cc2d2a cc2d2a coding downstream 322603 73525297 ~ 73557332 (+)
nek1 NA coding downstream 380688 73583382 ~ 73600500 (+)
sh3rf1 LOC106560245 coding downstream 410663 73613357 ~ 73683714 (+)
G436667 NA non-coding upstream 8974 73181834 ~ 73182158 (+)
G436640 LOC100194696 non-coding upstream 10354 73179636 ~ 73180778 (+)
G436556 LOC106560237 non-coding upstream 57458 73132359 ~ 73133674 (+)
G436632 NA non-coding upstream 80640 73107111 ~ 73110492 (+)
G436630 NA non-coding upstream 84899 73105124 ~ 73106233 (+)
G437291 NA non-coding downstream 219468 73422162 ~ 73422590 (+)
G437302 NA non-coding downstream 227930 73430624 ~ 73430918 (+)
G437303 LOC106560250 non-coding downstream 228901 73431595 ~ 73433683 (+)
G437312 NA non-coding downstream 241452 73444146 ~ 73444404 (+)
G437336 NA non-coding downstream 266083 73468777 ~ 73469172 (+)
G436588 NA other upstream 195397 72995499 ~ 72995735 (+)
G436403 NA other upstream 686697 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1503963 71552653 ~ 71687963 (+)
G434829 NA other upstream 1892232 71298615 ~ 71298900 (+)
G434792 LOC106613943 other upstream 1967554 71218789 ~ 71223578 (+)
G437327 NA other downstream 253607 73456301 ~ 73495084 (+)
LOC110524560 LOC106560270 other downstream 1560510 74729349 ~ 74770168 (+)
G438719 NA other downstream 1569315 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 1968610 75161317 ~ 75178287 (+)
G441903 NA other downstream 4065518 77268212 ~ 77268766 (+)

Expression


Co-expression Network