LOC100135942 (LOC106560239)


Basic Information

Item Value
gene id LOC100135942
gene name LOC106560239
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73207860 ~ 73218158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604256.2
GCGGTATCCAGGTAGCTCAGGTGAAGGACTCCTGCAAAAGCCTCCACTGCAGGGCAATGCCTCTTCATCCAGAATTTAGAGATACTCCGTCTCCCACTCTTGATGATGATGgtaaggcacctaaagactcagtcGTCCTGCCGGCATATTCTACCATGGACCTGGTGGACAAGGACCCGGATGAGGATGACCCCTGGAACCTCCCTGAACTGCAGGACACTGGACTCAAGTGGTCAGAGTTGGATGCCAAAGGGAAGGTTATGCGGGTTCTGACTTCCATCGTCAAGTTTATTCTGCTGGTTGGATTTCTCTACATGTTTGTCTGCTCTCTGGACGTCCTGAGCTCTGCTTTCCAGCTAGTTGGAGGTAAGGCAGCCGGGGACATCTTCCAGGACAATGCGGTGCTGTCCAACCCTGTGGCTGGCCTGGTGATTGGAGTGCTGGTCACAGTGTTAGTCCAGAGTTCTAGCACGTCCTCCTCTATTGTGGTCAGCATGGTGTCTTCTGGATTGCTGGAGGTCCAGTCTGCCGTGCCTGTCATTATGGGAGCCAACATTGGAacctctgtcaccaacactatcGTGGCGATGATGCAGGCAGGAGACAGAAATGAGTTCCGCAGGGCGTTTGCTGGTGCCACGGTGCATGACTTCTTTAACTGGCTGTCTGTGCTGATCCTGCTACCGCTGGAGGCAGCCACTGGTGTCCTGTATAAACTCACCAAGATTGTCATCGACTCCTTTAACATCCAGGGGGGTGACAATGCCCCTGACCTGCTAAACGTCATCACTGACCCCCTCACCAGTGCCATCATAGAGCTGGATAAAACGGTCATCAGTGACATTGCCACGGGTGACCCAGCGGCCAGAAACAAGAGTCTGATCAAAATCTGGTGCAAAACAGAGAATATCACGacTCTTTTAAATATAACAGTTCCCTCAGCTGCCAACTGCACAATCGGCGTCCCCTGTTGGGTGGAAGGCAACAAGACATGGACGCAGATAAATGTTACTGAGACGATCAATCTAGAGAGATGTAACCATATCTTTGCCTATGCTAACCTGCCTGACCTGGCTGTGGGCCTCATCCTGCTGGCCCTGTCCCTGCTCATCCTCTGTACCTGCCTCATCCTCATCGTCAAGCTGCTCAACTCCATGCTCAAGGGACAGGTGGCCGTGGTCATCAAAAAGGTGCTCAACACAGACTTCCCCTTCCCCTTCGGCTGGGTCACTGGTTACATTGCCATCCTGGTCGGAGCAGGAATGACCTTCATCGTTCAGAGCAGCTCTGTCTTCACCTCTGCAATCACGCCCCTTGTTGGTATTGGTGTTATTAGCCTTGAGAGAGCCTATCCCCTGACATTGGGCTCTAATATCGGCACAACTACCACTGCTATTCTTGCTGCTATGGCTGCTCCCGGGGAAACCCTGGCCAACTCACTGCAGATTGCACTGTGCCATTTCTTCTTCAACATAGCGGGGATCCTGCTGTGGTATCCTATCCCCTTCACTCGGATCCCCATCCGCTTGGCCAGAGCCCTGGGGAACCGCACAGCCAACTACCGCTGGTTCGCAGCGATCTACCTCTTGCTCTGCTTCTTCCTCATGCCCCTAACCATCCTGGGGCTCTCCCTGGCCGGCTGGCAGGCCCTGGTGGGGGTGGCTGTGCCCATCGTTGTCCTggccatcttcatcatcatcgtcaACCTGATGCAGACGCGTTGTCCTCGGTACCTGCCCAGCAGGCTCCGGAACTGGGACTTCTTGCCCCGCCCCCTGCACTCCATGGCCCCCTGGGATGGAGTGATTATGTCTGGCATGGCCTTCTGCGGCacccgctgctgctgctgctgtaagTGCTGCCAGAAGACTGAGGATGAAGAGAAGGGTGgtaaggagaggaagaagagtcaAGAGATGTATGATAACCCAGCCCTAACCAGAGACAATGAGCCACTAGAAGCTCCCAAGGAAACTGTGAAAGctacacagctctgacacagttATGAATTCACTGTAACACATCTGTAAGACATATATAACCAATTTGTAACATATATGTAATCCTCCACATTTGCTCAGGCTTTATGGAGTTAACCGGTCTCTGTTTAGGTGATACTGTATCATGAAGTGGTGAAGGCCTGAACACAGCAACTGTACTTCTTGTAGGAGAACATCACCATATATAGCTAAAACCACTCCATGGAATCATACAGACTCATTATGTACATCCGTCATACATTTTTGATCATGTTTATTGAATGTATCATTTCAACTTTCATGATAAAATAGAATGGGATAAACATGCAAtttgaaaaaatgtttttattaatgCATCACTTactatttaaaaatgttttaccttttgATATTTGTAAATAATACAAATTGTTAGTTGTAAACAGAATGTTGTGATATATTTCCAATTAGTGTAATGTTCCTATTTGATCATTTACTGTATTGCATTGTGTATTGTATCATGACTGACTGTCATTTTACATTCTGTCGGACTGAATACATGTTGGTATTTGTTTTATATGGGTTTCACAGTATTGTCTCTCATCAATAAATATTAGAAACCAA

Function

NR:

description
sodium-dependent phosphate transport protein 2B-like

GO: NA

KEGG:

id description
K14683 SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604256.2 True 2582 mRNA 0.49 13 73207860 73218158

Neighbor

gene id symbol gene type direction distance location
LOC110522885 LOC106560352 coding downstream 18922 73188025 ~ 73188938 (-)
LOC110524524 LOC100194696 coding downstream 26971 73174706 ~ 73180889 (-)
LOC110524523 LOC106560237 coding downstream 44429 73132102 ~ 73163431 (-)
LOC110524520 LOC106560236 coding downstream 97957 73106039 ~ 73109903 (-)
LOC110524518 LOC106560233 coding downstream 145446 73051611 ~ 73062414 (-)
LOC110524526 LOC106584218 coding upstream 152281 73370439 ~ 73421683 (-)
LOC110524527 LOC106560250 coding upstream 213405 73431563 ~ 73444514 (-)
LOC110524532 LOC106560246 coding upstream 339215 73557373 ~ 73574822 (-)
LOC110524534 LOC106560249 coding upstream 361741 73579899 ~ 73583099 (-)
palld LOC106560254 coding upstream 473698 73691856 ~ 73787594 (-)
G437075 NA non-coding downstream 81496 73125420 ~ 73126364 (-)
G437073 LOC106567308 non-coding downstream 85833 73121401 ~ 73122027 (-)
G437069 NA non-coding downstream 93008 73114613 ~ 73114852 (-)
G437067 NA non-coding downstream 94131 73113458 ~ 73113729 (-)
G437318 NA non-coding upstream 222086 73440244 ~ 73440536 (-)
G437660 LOC106560248 non-coding upstream 268509 73486667 ~ 73488455 (-)
G437680 cc2d2a non-coding upstream 313450 73531608 ~ 73532196 (-)
G437705 NA non-coding upstream 375936 73594094 ~ 73594489 (-)
G437703 NA non-coding upstream 379219 73597377 ~ 73598010 (-)
G437079 NA other downstream 60732 73146358 ~ 73147128 (-)
G437074 NA other downstream 82822 73122112 ~ 73125038 (-)
G437054 NA other downstream 112524 73094794 ~ 73095336 (-)
G436873 NA other downstream 431992 72774561 ~ 72775868 (-)
G436847 NA other downstream 535034 72672154 ~ 72672826 (-)
G439002 NA other upstream 1647101 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 1745302 74961377 ~ 74968484 (-)
G439594 NA other upstream 2045315 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 2353091 75571249 ~ 75575569 (-)

Expression

LOC100135942(LOC106560239) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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LOC100135942(LOC106560239) Expression in each Bioproject

Bar chart with 16 bars.
LOC100135942(LOC106560239) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
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Co-expression Network