LOC110524526 (LOC106584218)


Basic Information

Item Value
gene id LOC110524526
gene name LOC106584218
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73370439 ~ 73421683 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978342.1
AAACAGACTACCTTCAGTCCTTTAACACTGCAGTCACAGCACAGACACCAGACTGATGTGGGAGGTCCGAGGTAATAAAGGCGATGTGCTCTATGTTTTGGATGCCAGTAACCCTCGCCATGCCAACTGGCTGCGTTTTGTCCATCAGGCGCCATCACAAGAGGAGAAGAACCTGGCAGCAATCCAGGATGGAGAGAATATCTTCTACCTGGCAGTGGACGACATTGATACAGACACAGAGCTGCTGATAGGCTACCTGGACAGTGATATGGAGGAAGagtcagaggaggaggaagaagaaatcaTCAAATATGAAGATGAAAACAGCAAAGATGCCAAACATCTTGTTGAAATGGAGCTGGTGATCAAGAAGGAGGACCACCCGTGCCTGCTGTGTGAGAGCAGCTTCCCTAGCGAGGAGATCCTAGCAGCCCACCTCCAGAGCCTCCACCAGAGACCCAGTACTGAGGAGAAGGAGTACAAGTGCAGGAACTGTGGCAAGAAGTTCCCCATCAAACAAGCCCTGCAGCGCCATGTTCTGCACTGTGCGGAGACCCTGGGTCCTTCAGGAGACTCTTCCAGAGCCCACCACCAGTGTTCCCTCTGCTACATCACCTTCAGCTCAGAGTCCAGttatgaCCAGCACAAGGAGGCGTGCAGAGGAGACGCCAGGTTCATCTGTAAGGCTGAGAGTTGTGGGAAGAGGTTCAAGAGCAAAGACTCTCTGAAGAAACACAAAGGGAACGTCCACACAGGAAGTTCCAGGCGGAAGCTCATGTGCACCATCTGCAACAGGAAATGTTCCTCCTTACTGAACCTCCAGGAACATCGCAAGGTACATGAGATATTCGACTGTGCTGCCTGCGACAAGAAATTCATCTCGACCAATCAGCTTAAGCGCCACATGATCACTCACTCAGAGAAACGTCCGTATACCTGTGAGGTCTGCAGTCGTTGGTTCAAGCGTCTGGACCAGGTGACGGCCCATAAGATCATCCACAGTGAGGAAAAGCCCTACAAGTGTAAGCTGTGTGGGAAGGAGTTTGCCCACAGGAACGTCTACAAGAACCACAAGAAGACTCACTCAGAGGAGAGGCCGTTCCAGTGTGAGGAGTGCAAGGCCCTGTTCCGCACCCCCTTCTCTTTACAGCGCCACCTGCTCATCCACAACAGTGAGAGGACATTTAAGTGTGACCAATGTGATGCCACCTTCAAGAGAAAAGACACGCTCAACGTGCACATCCAGGTGGTACACGACGGACACAAGAAGTACAAGTGTGACCTGTGTGAGAAGGCCTTCGTCACCCCCTCTGTTCTCAAGAGCCACAAGAAGACGCACACAGGGGAAAAGGAGAAGATCTGCCCATATTGTGAACAGAAGTTTGCCAGCAATGGAACTTTGAGGGTTCACATCCGCAGCCATACAGGTGAGCGCCCATACCAGTGCCCCTACTGTGACAAAGCATTCAGCAAGAATGATGGTCTGAAGATGCACATCCGCACACACACTCGGGAGAAGCCATATAAATGCAGTGAGTGTAACAAGGCCTTCAGTCAGAAGAGAGGTCTGGATGAACACATGAGGACCCACACCGGAGAGAAACCCTTCCAGTGTGATGTGTGTGACCTGTCGTTCAGTCTGAAGAAGATGCTGAGCAGGCACAAGCTGACCCACAACCCCAACAGGCCCATGGCAGAGTGCTCGCTGTGCCATAAGAAGTTCACCAGGAATGACTACCTCAAAGTGCACATGGAGAATGTTCACGGAGAGACAGAGGGCTAAGGAACCCATCTATTTGAGACAGTTTACTAAAGATAAAGATACAGTATACTATATTTACAGTGTAATACATACAGGATGACTTGCTATGCATTTCATATGTAGCAATAAGCAGTGTTTGTTGCTATTAAATACTGTATATGCAAATGCAGAATATAGAAAAGATACATTTAAATATTGAAACAAATCCTGTACGTATGAATTATGGAGTATGAACATTAGATATTCAATTCACAGGGATTTTTGCATGAGGCACAAGACCCACACAGTTCTGATCTGCTTCCAAACTGCCAATTTCTCCCTGTTTGCCATTTACATTCAATTTCATTTTGATATGAAAGTTTGGGATTGACATTTCCAGACTATGCAGCACAATACAATAACTAGCCTAGTTCAAAAAGTCTCTACCCCACAGTCTGCTTCTAGGTTCCCACCTCATGCCAACCATGCTGTGCCTTTACCACCTCTGCTCAGGTGTCTTACTCGGCCACAACTATTGTGACCAGGTACAAACTTTCCAAAGAGTTTCCAAGCCAAAGATGTTTACCAAACACAGCCAGCCTACTCCCTTCCTCCAGCCCACTCATTGCCTGGAAATGCAATTCATTACCATTGTCAAAGTTACTGTTACAGTTTGTCaaaataataatgttttttttatggttaTTTCATATTCTGAGGGATCAAGTAGTTTCTttgtgtttacattcctgttttTGTAATCCTGTATGTTAAATGGGAAATGTATTTAA
>XM_036978340.1
AATCAGGACGCCTGCTAGTCGTGCAGCAAGAGAGGAAATTTAACCTGGACCGAATTACAGAGAACACCCCGCTGCAAACTCTCGTGTTTGCGAAAACAGACAATAGTCATTACTTTCCCCGCTGGCATAGTTTCTAATGATCACATTAGGGATTCGCTCAGAGCAATGACAATGTTGGGAATGTATGTGCCAGATAGATTTTCTTTGAAATCATCTAATGTCCAGGATGGAATCGGGCTTTACACGGCGAGACAAGTGAAAAAGGGGGAAAAGTTTGGCCCTTTTGCTGGAGAGAAGAAACTACCAAGTGAGCTGGATGAGAGCACAGACACCAGACTGATGTGGGAGGTCCGAGGTAATAAAGGCGATGTGCTCTATGTTTTGGATGCCAGTAACCCTCGCCATGCCAACTGGCTGCGTTTTGTCCATCAGGCGCCATCACAAGAGGAGAAGAACCTGGCAGCAATCCAGGATGGAGAGAATATCTTCTACCTGGCAGTGGACGACATTGATACAGACACAGAGCTGCTGATAGGCTACCTGGACAGTGATATGGAGGAAGagtcagaggaggaggaagaagaaatcaTCAAATATGAAGATGAAAACAGCAAAGATGCCAAACATCTTGTTGAAATGGAGCTGGTGATCAAGAAGGAGGACCACCCGTGCCTGCTGTGTGAGAGCAGCTTCCCTAGCGAGGAGATCCTAGCAGCCCACCTCCAGAGCCTCCACCAGAGACCCAGTACTGAGGAGAAGGAGTACAAGTGCAGGAACTGTGGCAAGAAGTTCCCCATCAAACAAGCCCTGCAGCGCCATGTTCTGCACTGTGCGGAGACCCTGGGTCCTTCAGGAGACTCTTCCAGAGCCCACCACCAGTGTTCCCTCTGCTACATCACCTTCAGCTCAGAGTCCAGttatgaCCAGCACAAGGAGGCGTGCAGAGGAGACGCCAGGTTCATCTGTAAGGCTGAGAGTTGTGGGAAGAGGTTCAAGAGCAAAGACTCTCTGAAGAAACACAAAGGGAACGTCCACACAGGAAGTTCCAGGCGGAAGCTCATGTGCACCATCTGCAACAGGAAATGTTCCTCCTTACTGAACCTCCAGGAACATCGCAAGGTACATGAGATATTCGACTGTGCTGCCTGCGACAAGAAATTCATCTCGACCAATCAGCTTAAGCGCCACATGATCACTCACTCAGAGAAACGTCCGTATACCTGTGAGGTCTGCAGTCGTTGGTTCAAGCGTCTGGACCAGGTGACGGCCCATAAGATCATCCACAGTGAGGAAAAGCCCTACAAGTGTAAGCTGTGTGGGAAGGAGTTTGCCCACAGGAACGTCTACAAGAACCACAAGAAGACTCACTCAGAGGAGAGGCCGTTCCAGTGTGAGGAGTGCAAGGCCCTGTTCCGCACCCCCTTCTCTTTACAGCGCCACCTGCTCATCCACAACAGTGAGAGGACATTTAAGTGTGACCAATGTGATGCCACCTTCAAGAGAAAAGACACGCTCAACGTGCACATCCAGGTGGTACACGACGGACACAAGAAGTACAAGTGTGACCTGTGTGAGAAGGCCTTCGTCACCCCCTCTGTTCTCAAGAGCCACAAGAAGACGCACACAGGGGAAAAGGAGAAGATCTGCCCATATTGTGAACAGAAGTTTGCCAGCAATGGAACTTTGAGGGTTCACATCCGCAGCCATACAGGTGAGCGCCCATACCAGTGCCCCTACTGTGACAAAGCATTCAGCAAGAATGATGGTCTGAAGATGCACATCCGCACACACACTCGGGAGAAGCCATATAAATGCAGTGAGTGTAACAAGGCCTTCAGTCAGAAGAGAGGTCTGGATGAACACATGAGGACCCACACCGGAGAGAAACCCTTCCAGTGTGATGTGTGTGACCTGTCGTTCAGTCTGAAGAAGATGCTGAGCAGGCACAAGCTGACCCACAACCCCAACAGGCCCATGGCAGAGTGCTCGCTGTGCCATAAGAAGTTCACCAGGAATGACTACCTCAAAGTGCACATGGAGAATGTTCACGGAGAGACAGAGGGCTAAGGAACCCATCTATTTGAGACAGTTTACTAAAGATAAAGATACAGTATACTATATTTACAGTGTAATACATACAGGATGACTTGCTATGCATTTCATATGTAGCAATAAGCAGTGTTTGTTGCTATTAAATACTGTATATGCAAATGCAGAATATAGAAAAGATACATTTAAATATTGAAACAAATCCTGTACGTATGAATTATGGAGTATGAACATTAGATATTCAATTCACAGGGATTTTTGCATGAGGCACAAGACCCACACAGTTCTGATCTGCTTCCAAACTGCCAATTTCTCCCTGTTTGCCATTTACATTCAATTTCATTTTGATATGAAAGTTTGGGATTGACATTTCCAGACTATGCAGCACAATACAATAACTAGCCTAGTTCAAAAAGTCTCTACCCCACAGTCTGCTTCTAGGTTCCCACCTCATGCCAACCATGCTGTGCCTTTACCACCTCTGCTCAGGTGTCTTACTCGGCCACAACTATTGTGACCAGGTACAAACTTTCCAAAGAGTTTCCAAGCCAAAGATGTTTACCAAACACAGCCAGCCTACTCCCTTCCTCCAGCCCACTCATTGCCTGGAAATGCAATTCATTACCATTGTCAAAGTTACTGTTACAGTTTGTCaaaataataatgttttttttatggttaTTTCATATTCTGAGGGATCAAGTAGTTTCTttgtgtttacattcctgttttTGTAATCCTGTATGTTAAATGGGAAATGTATTTAA
>XM_036978341.1
CAATCAGGACGCCTGCTAGTCGTGCAGCAAGAGAGGAAATTTAACCTGGACCGAATTACAGAGAACACCCCGCTGCAAACTCTCGTGTTTGCGAAAACAGACAATAGTCATTACTTTCCCCGCTGGCATAGTTTCTAATGATCACATTAGGGATTCGCTCAGAGCAATGACAATGTTGGGAATGTATGTGCCAGATAGATTTTCTTTGAAATCATCTAATGTCCAGGATGGAATCGGGCTTTACACGGCGAGACAAGTGAAAAAGGTCCGAGGTAATAAAGGCGATGTGCTCTATGTTTTGGATGCCAGTAACCCTCGCCATGCCAACTGGCTGCGTTTTGTCCATCAGGCGCCATCACAAGAGGAGAAGAACCTGGCAGCAATCCAGGATGGAGAGAATATCTTCTACCTGGCAGTGGACGACATTGATACAGACACAGAGCTGCTGATAGGCTACCTGGACAGTGATATGGAGGAAGagtcagaggaggaggaagaagaaatcaTCAAATATGAAGATGAAAACAGCAAAGATGCCAAACATCTTGTTGAAATGGAGCTGGTGATCAAGAAGGAGGACCACCCGTGCCTGCTGTGTGAGAGCAGCTTCCCTAGCGAGGAGATCCTAGCAGCCCACCTCCAGAGCCTCCACCAGAGACCCAGTACTGAGGAGAAGGAGTACAAGTGCAGGAACTGTGGCAAGAAGTTCCCCATCAAACAAGCCCTGCAGCGCCATGTTCTGCACTGTGCGGAGACCCTGGGTCCTTCAGGAGACTCTTCCAGAGCCCACCACCAGTGTTCCCTCTGCTACATCACCTTCAGCTCAGAGTCCAGttatgaCCAGCACAAGGAGGCGTGCAGAGGAGACGCCAGGTTCATCTGTAAGGCTGAGAGTTGTGGGAAGAGGTTCAAGAGCAAAGACTCTCTGAAGAAACACAAAGGGAACGTCCACACAGGAAGTTCCAGGCGGAAGCTCATGTGCACCATCTGCAACAGGAAATGTTCCTCCTTACTGAACCTCCAGGAACATCGCAAGGTACATGAGATATTCGACTGTGCTGCCTGCGACAAGAAATTCATCTCGACCAATCAGCTTAAGCGCCACATGATCACTCACTCAGAGAAACGTCCGTATACCTGTGAGGTCTGCAGTCGTTGGTTCAAGCGTCTGGACCAGGTGACGGCCCATAAGATCATCCACAGTGAGGAAAAGCCCTACAAGTGTAAGCTGTGTGGGAAGGAGTTTGCCCACAGGAACGTCTACAAGAACCACAAGAAGACTCACTCAGAGGAGAGGCCGTTCCAGTGTGAGGAGTGCAAGGCCCTGTTCCGCACCCCCTTCTCTTTACAGCGCCACCTGCTCATCCACAACAGTGAGAGGACATTTAAGTGTGACCAATGTGATGCCACCTTCAAGAGAAAAGACACGCTCAACGTGCACATCCAGGTGGTACACGACGGACACAAGAAGTACAAGTGTGACCTGTGTGAGAAGGCCTTCGTCACCCCCTCTGTTCTCAAGAGCCACAAGAAGACGCACACAGGGGAAAAGGAGAAGATCTGCCCATATTGTGAACAGAAGTTTGCCAGCAATGGAACTTTGAGGGTTCACATCCGCAGCCATACAGGTGAGCGCCCATACCAGTGCCCCTACTGTGACAAAGCATTCAGCAAGAATGATGGTCTGAAGATGCACATCCGCACACACACTCGGGAGAAGCCATATAAATGCAGTGAGTGTAACAAGGCCTTCAGTCAGAAGAGAGGTCTGGATGAACACATGAGGACCCACACCGGAGAGAAACCCTTCCAGTGTGATGTGTGTGACCTGTCGTTCAGTCTGAAGAAGATGCTGAGCAGGCACAAGCTGACCCACAACCCCAACAGGCCCATGGCAGAGTGCTCGCTGTGCCATAAGAAGTTCACCAGGAATGACTACCTCAAAGTGCACATGGAGAATGTTCACGGAGAGACAGAGGGCTAAGGAACCCATCTATTTGAGACAGTTTACTAAAGATAAAGATACAGTATACTATATTTACAGTGTAATACATACAGGATGACTTGCTATGCATTTCATATGTAGCAATAAGCAGTGTTTGTTGCTATTAAATACTGTATATGCAAATGCAGAATATAGAAAAGATACATTTAAATATTGAAACAAATCCTGTACGTATGAATTATGGAGTATGAACATTAGATATTCAATTCACAGGGATTTTTGCATGAGGCACAAGACCCACACAGTTCTGATCTGCTTCCAAACTGCCAATTTCTCCCTGTTTGCCATTTACATTCAATTTCATTTTGATATGAAAGTTTGGGATTGACATTTCCAGACTATGCAGCACAATACAATAACTAGCCTAGTTCAAAAAGTCTCTACCCCACAGTCTGCTTCTAGGTTCCCACCTCATGCCAACCATGCTGTGCCTTTACCACCTCTGCTCAGGTGTCTTACTCGGCCACAACTATTGTGACCAGGTACAAACTTTCCAAAGAGTTTCCAAGCCAAAGATGTTTACCAAACACAGCCAGCCTACTCCCTTCCTCCAGCCCACTCATTGCCTGGAAATGCAATTCATTACCATTGTCAAAGTTACTGTTACAGTTTGTCaaaataataatgttttttttatggttaTTTCATATTCTGAGGGATCAAGTAGTTTCTttgtgtttacattcctgttttTGTAATCCTGTATGTTAAATGGGAAATGTATTTAA
>TU495056
GCAGAACAGCTATCAAATGTGCTATTATTCAAACCATGCTGAGAGCAGGAGAAGGATTCAAACTTTTCAGCTGTTTAATTATATTTCTGTGTGCTGACGTAATTGAGCAAGGAGtgaaagagtgtgtgtatgtgtgtctgtgaataCTCCTCTGTCTGCAAGTGGAAAAGGTTACACATCAAGGTCATACATTGTCATTTACAGAACACAGCGTGCAGTGAAatccattatctctgtctcttacaTAACCCCCCTGTATCTGGTCTGTTGGCTAATTTATGTATCTCCAGGTACATGAGATATTCGACTGTGCTGCCTGCGACAAGAAATTCATCTCGACCAATCAGCTTAAGCGCCACATGATCACTCACTCAGAAACGTCCGTATACCTGTGAGGTCTGCAGTCGTTGGTTCAAGCGTCTGGACCAGGTGACGGCCCATAAGATCATCCACAGTGAGGAAAAGCCCTACAAGTGTAAGCTGTGTGGGAAGGAGTTTGCCCACAGGAACGTCTACAAGAACCACAAGAAGACTCACTCAGAGGAGAGGCCGTTCCAGTGTGAGGAGTGCAAGGCCCTGTTCCGCACCCCCTTCTCTTTACAGCGCCACCTGCTCATCCACAACAGTGAGAGGACATTTAAGTGTGACCAATGTGATGCCACCTTCAAGAGAAAAGACACGCTCAACGTGCACATCCAGGTGGTACACGACGGACACAAGAAGTACAAGTGTGACCTGTGTGAGAAGGCCTTCGTCACCCCCTCTGTTCTCAAGAGCCACAAGAAGACGCACACAGGGGAAAAGGAGAAGATCTGCCCATATTGTGAACAGAAGTTTGCCAGCAATGGAACTTTGAGGGTTCACATCCGCAGCCATACAGGTGAGCGCCCATACCAGTGCCCCTACTGTGACAAAGCATTCAGCAAGAATGATGGTCTGAAGATGCACATCCGCACACACACTCGGGAGAAGCCATATAAATGCAGTGAGTGTAACAAGGCCTTCAGTCAGAAGAGAGGTCTGGATGAACACATGAGGACCCACACCGGAGAGAAACCCTTCCAGTGTGATGTGTGTGACCTGTCGTTCAGTCTGAAGAAGATGCTGAGCAGGCACAAGCTGACCCACAACCCCAACAGGCCCATGGCAGAGTGCTCGCTGTGCCATAAGAAGTTCACCAGGAATGACTACCTCAAAGTGCACATGGAGAATGTTCACGGAGAGACAGAGGGCTAAGGAACCCATCTATTTGAGACAGTTTACTAAAGATAAAGATACAGTATACTATATTTACAGTGTAATACATACAGGATGACTTGCTATGCATTTCATATGTAGCAATAAGCAGTGTTTGTTGCTATTAAATACTGTATATGCAAATGCAGAATATAGAAAAGATACATTTAAATATTGAAACAAATCCTGTACGTATGAATTATGGAGTATGAACATTAGATATTCAATTCACAGGGATTTTTGCATGAGGCACAAGACCCACACAGTTCTGATCTGCTTCCAAACTGCCAATTTCTCCCTGTTTGCCATTTACATTCAATTTCATTTTGATATGAAAGTTTGGGATTGACATTTCCAGACTATGCAGCACAATACAATAACTAGCCTAGTTCAAAAAGTCTCTACCCCACAGTCTGCTTCTAGGTTCCCACCTCATGCCAACCATGCTGTGCCTTTACCACCTCTGCTCAGGTGTCTTACTCGGCCACAACTATTGTGACCAGGTACAAACTTTCCAAAGAGTTTCCAAGCCAAAGATGTTTACCAAACACAGCCAGCCTACTCCCTTCCTCCAGCCCAC

Function

NR:

description
PR domain zinc finger protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978342.1 False 2532 mRNA 0.47 15 73370439 73419304
XM_036978340.1 False 2816 mRNA 0.47 16 73370439 73421682
XM_036978341.1 False 2733 mRNA 0.47 15 73370439 73421683
TU495056 True 1816 TUCP 0.46 8 73370608 73410339

Neighbor

gene id symbol gene type direction distance location
LOC100135942 LOC106560239 coding downstream 152281 73207860 ~ 73218158 (-)
LOC110522885 LOC106560352 coding downstream 181501 73188025 ~ 73188938 (-)
LOC110524524 LOC100194696 coding downstream 189550 73174706 ~ 73180889 (-)
LOC110524523 LOC106560237 coding downstream 207008 73132102 ~ 73163431 (-)
LOC110524520 LOC106560236 coding downstream 260536 73106039 ~ 73109903 (-)
LOC110524527 LOC106560250 coding upstream 9880 73431563 ~ 73444514 (-)
LOC110524532 LOC106560246 coding upstream 135690 73557373 ~ 73574822 (-)
LOC110524534 LOC106560249 coding upstream 158216 73579899 ~ 73583099 (-)
palld LOC106560254 coding upstream 270173 73691856 ~ 73787594 (-)
LOC118964642 LOC106560258 coding upstream 423169 73844674 ~ 73847759 (-)
G437075 NA non-coding downstream 244075 73125420 ~ 73126364 (-)
G437073 LOC106567308 non-coding downstream 248412 73121401 ~ 73122027 (-)
G437069 NA non-coding downstream 255587 73114613 ~ 73114852 (-)
G437067 NA non-coding downstream 256710 73113458 ~ 73113729 (-)
G437318 NA non-coding upstream 18561 73440244 ~ 73440536 (-)
G437660 LOC106560248 non-coding upstream 64984 73486667 ~ 73488455 (-)
G437680 cc2d2a non-coding upstream 109925 73531608 ~ 73532196 (-)
G437705 NA non-coding upstream 172411 73594094 ~ 73594489 (-)
G437703 NA non-coding upstream 175694 73597377 ~ 73598010 (-)
G437079 NA other downstream 223311 73146358 ~ 73147128 (-)
G437074 NA other downstream 245401 73122112 ~ 73125038 (-)
G437054 NA other downstream 275103 73094794 ~ 73095336 (-)
G436873 NA other downstream 594571 72774561 ~ 72775868 (-)
G436847 NA other downstream 697613 72672154 ~ 72672826 (-)
G439002 NA other upstream 1443576 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 1541777 74961377 ~ 74968484 (-)
G439594 NA other upstream 1841790 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 2149566 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 3164775 76586458 ~ 76590370 (-)

Expression


Co-expression Network