LOC110524527 (LOC106560250)


Basic Information

Item Value
gene id LOC110524527
gene name LOC106560250
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73431563 ~ 73444514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604258.2
TTACTTGTTGGGGCTGTGGTGTCCAGGGGGAGGAGTGGGCCGGTTATCGGAGTGCTCCTAGGGAAGCGCATAGACAGAAGTTCGCATCAGTTTGTCTTCCAATTCAGTCGGTCCAGTCTCAATAGCAGCCACACGGCAGGGGACGGACGCGCTGCCAGAACTCAGGATACACAGACAAGGTTCAACCCTCCAGAACTGCCAACACGCACCACAGCTGTAGTCCGATTTTCACCACACAAGAACTGACTCGAGGAATCTATCGAACACTAAAAAGGACacatttattgtatttttttgtttgatttagtttttgtattgttttggtCTCAGAAGTGTTGATACGGTTGAGGGAACTTTCCAGCTTGTTTTATCATCCCTAAATCTGAAAGGAGGATGAGGCTGTGCTTGGGACCTCAGGGCTGGCCTCTGGGCCTGGCTCTGGTGCTGGGGGTTGTATTTGGCCAGAAGCTGCCCACACGAGATGAGGGCCTGTTCCAGATGCAGATCAGAGACAAGACCCTGTTTCATGATTCCTCCGTCATCCCAGACGGCGCCGAGATCAGTGGATACTTGTTCAGGGACACACCTAAAAGGTACTACTTTGTGGTGGAGGAGGACAATACCCCGCTGTCTGTGACGGTGACACCATGTGATGCTCCTCTGGAGTGGAAGCTCACTCTGCAGGAGCTGCCTGATGAGGCCAGCGGAGAGGGATCAGGTAAGCCGGAGCCCCTGGAccagcagaagcagcagcaggTGACAGTGGATGAGGGCACAGAGCTCTTCTCCTACAAGGGGAATGATGTGGAGTCTTACATGGCTACCAGCTCTCCCTCCGGCCTCTACCAACTGGAGATGCTCTCCACAGAGAAGGACAGCAACTTCAAGGTGTACGCCACCACCACCCCAGAGTCTGACCAGCCCTACCCCGAGCTGCCCTACGATCCCCGGGTGGACGTCACTGCCCTGGGCCGTACCACTGTCACTCTGGCCTGGAAGCCCACCCCGACGGGCGTTCTGATGGGCCAGCCCGTCCAGTACTGTGTTGTCATCAACAAGGAGCACAACTTCAAAAGTCTGTGTGCTGCCGAGGCTAAGATCAGCGCTGACGATGCCTTCATGGCCGTTCCAAAGCCAGGCCGGGACTTCAGCCCCTTTGACTTTGCCCACTTTGGCTTTGTCCGCTCAGACAATGACTTTAACAAGGACCGAGGTCTCACCAGCAACAAGATCTCCCGCTCCTACACAGCCAAGTCCAAGGCCTCGGACATTCAGAAAGTCTGCATCGGTAACAAGAACATCTTCACCGTGTCGGACCTGAAGCCGGACACTCAGTACTACTTTGACGTATTCGCTATGAACTCTGCCACCAACACCAGCACCGCCTACGTGGGCACGTTCGCCCGCACTAAGGAGGAGGCTCGGCAGAAGAcggtggagctgaaggatggcaAGGTGTCTGATGTCTTCATCAAGAGGAAGGGCAGTAAGTTCCTACGCTTCGCCCCGGTCTCCTCTCATCAGAGGGTCACTCTGTTTGTGCACACCTGTCTGGACTCTGTCCAGGTGCAGGTGAGGCGTGACGGCAAGTTGCTGCTCTCCCAGAATGTGGAAGGGGTACGACAGTTCCAGCTGCGGGGGAAGCCTAAGGCCAAGTACCTGATCCGTCTGCGAGGCAGCAGGAAAGGAGCGTCCACCCTGAAGGTGCTGGCCACCACAAAGCCCAGCAGCAAGCAGCCCTTCCCCTCGCTTCCCGAGGACACGCGCATCAAGGCTTTTGACAAGCTGCGTACCTGCTCCACTGCCACTGTGGCCTGGCTGGGAACGCAGGACCGCAACAAGTACTGTGTCTACAAAAAAGAGGTGTCCGAGAGCTACGGCGAGGAGCAGCGGCGCCGTGAGCAGAACCAGTGTGCCGGGCCCGAGACGCGCAGGAAGTCAGAGAAGGTCCTCTGCAAGTACTTCCACAGCCCTAACCTGCAGAAGGCCGTTACCACGGAAACCATCACAGGGCTAGAGCCGGGCAAGACCTACCTGCTGGACGTTTATGTTGTGGGCCACAGTGGTCACTCAGTCAAATACCAGAGCAAACTGGTGAAAACAAGGAAATACTGCTAAAAGACTGCATAGAATAAAtctattataaatatatatattaaaaaagttTTATTTAACTCTAAGTGATATTCTACTAAGGAGTGAATACAGACTGACTACTCACACAGCTGATGGGCCTGTGGCAGAGACTGAACTGTTTGTAGAGATATCAACCTGTATATTTATGTTTACATTTCATTGTTGGCACGTTTTTGGGCGATCCATAGCGAGGTGCTCTGTCACCTTTGCTTGGGGACCTAGCATCTCGTTGCCAACAGGGAGACCTCCGAGCTTCAGAAAAGAGACTGTTTCATCTTGTGTGTTTCTTTGTTGCTGCATGACTCTTGTGTTTGTCAAAATGGTTTGTTCCTTCAGTTTCAATTCCCGTTGACCTGCAGAGATACAATAGCTACCGGCCTTGTATAGTTCTCTCATTGCTTTATTCACATTTAGGATAGATTTCAATTATTTTATACTTCTTTGCCTCTTTTGGTTTGATTGTTTGATTTATTGGTAATGATGACTATTACATTTATGAGGAAGTAATTCAAAATCTATGAGGAAATTGTGGTTGTGGAGACATTCCCTTGTGCATCTCAGCCAGGGTACACTCAAGAGCCcgtctgtaaatgtgttctgtgCTGGAGGTCTGTGTTATCACTGTATCACCGTGTTTGTCACATGTACAGAGTTGTCCTGCCAATATTCATGTACATAAACACTAAATATAGAACAAGTAATCCCTGTGTCA

Function

NR:

description
protein NDNF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604258.2 True 2848 mRNA 0.51 4 73431563 73444514

Neighbor

gene id symbol gene type direction distance location
LOC110524526 LOC106584218 coding downstream 9880 73370439 ~ 73421683 (-)
LOC100135942 LOC106560239 coding downstream 213405 73207860 ~ 73218158 (-)
LOC110522885 LOC106560352 coding downstream 242625 73188025 ~ 73188938 (-)
LOC110524524 LOC100194696 coding downstream 250674 73174706 ~ 73180889 (-)
LOC110524523 LOC106560237 coding downstream 268132 73132102 ~ 73163431 (-)
LOC110524532 LOC106560246 coding upstream 112859 73557373 ~ 73574822 (-)
LOC110524534 LOC106560249 coding upstream 135385 73579899 ~ 73583099 (-)
palld LOC106560254 coding upstream 247342 73691856 ~ 73787594 (-)
LOC118964642 LOC106560258 coding upstream 400338 73844674 ~ 73847759 (-)
fryl NA coding upstream 406400 73850914 ~ 73953877 (-)
G437075 NA non-coding downstream 305199 73125420 ~ 73126364 (-)
G437073 LOC106567308 non-coding downstream 309536 73121401 ~ 73122027 (-)
G437069 NA non-coding downstream 316711 73114613 ~ 73114852 (-)
G437067 NA non-coding downstream 317834 73113458 ~ 73113729 (-)
G437660 LOC106560248 non-coding upstream 42153 73486667 ~ 73488455 (-)
G437680 cc2d2a non-coding upstream 87094 73531608 ~ 73532196 (-)
G437705 NA non-coding upstream 149580 73594094 ~ 73594489 (-)
G437703 NA non-coding upstream 152863 73597377 ~ 73598010 (-)
G437709 NA non-coding upstream 156557 73601071 ~ 73601626 (-)
G437079 NA other downstream 284435 73146358 ~ 73147128 (-)
G437074 NA other downstream 306525 73122112 ~ 73125038 (-)
G437054 NA other downstream 336227 73094794 ~ 73095336 (-)
G436873 NA other downstream 655695 72774561 ~ 72775868 (-)
G439002 NA other upstream 1420745 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 1518946 74961377 ~ 74968484 (-)
G439594 NA other upstream 1818959 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 2126735 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 3141944 76586458 ~ 76590370 (-)

Expression


Co-expression Network