LOC110524529 (LOC106560251)


Basic Information

Item Value
gene id LOC110524529
gene name LOC106560251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73514943 ~ 73524397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604261.2
GACTctgagagggagcagagagacagagggagcccTACACAAATGTTTGAAGGAGCCCTACAAAGACGAAGGAtaggagagcgagacagagaggttGAGAAGGAGACTATGTTATCCAAGGACATTCTACTTATCTCTCATCACCAAGGACACAGGACTGTGACCAGGAAGGAGATCTGAGGATTGACACAATTATACTGATTGGAAGTTGTTGAAGCAGTCAACAAGAGGAGCAGCTCTCAACCTGTGAGCTGAGGATGTGGCGGTTGGTAGGCGTGGCCTTTCTGTGCCAGTGTGTGATTGGTCAGCTGCTGGAGGCCAAGGTGAGAGGAACTCCACCTCGTCTGATCTGCAGTGTTCCGGGGTTGCCAGGGACACCAGGTAAACCTGGCCCCAACGGGCCTCCAGGGGCCAACGGGAGCGTAGGAATCCCAGGAAGAGATGGCAGAGatggcaggagaggagagaaaggagagaagggtggagcaGGGGTAAAGGGGAAAGTCGGCCCAATGGGTAAACTTGGCCAGCGGGGTGACCGGGGTCCTGGTGGGAAGAGGGGTCCTGGTGGAGAGAGCGGGGATGGGGGCCTACCTGGTCCTCCAGGGCCCCTTGGGAAGAAAGGGGACAAGGGCCAGCGAGGGCCAAGGGGGATGGCAGGAGTCTGCCGGTGTGGCAGCCTGGTGCCTAAAGCAGCCTTCTCTGTGGGAATCACCAGTAGTTACCCTGCTGAGAAGGAACCTATCAAGTTCAACAAGGTCCTCTTCAATGAGGGGGGGCACTACAACCCAGAGACGGGTAAGTTCATCTGCGCCTACCCAGGCATCTACTACTTCTCCTATGACATCACACTGGCCAACAAGCATCTGGCCATCGGGCTGGTGCAGAACGGACAGTACCGCATCAAGACATTTGATGCAAACACAGGAAACCATGACGTGGCCTCTGGGTCCTTAGTAATGTTCCTGAACCCAGAAGACGAGGTGTGGCTGGAGATCTTCTTCAAGGACCAGAATGGCCTGTTTGCAGATGCAGGGTGGTCTGACAGCCTGTTCTCTGGATTCCTGATATATGCAGACACCAACTACCTGGACTCACTAGCAGAGGACTACGCATAGTTACTTATTACATTCAATAAAGAACTGAGAGGACTGAGTTTATAGCCTCCCCTTGATGCATTTAGAGTATCTATTTCataatgttttatttatattctatataaatacagtgagctccaaaagtattgggacagcgacatttttgttgttgttgttgttgttttggctctgtattccagcacattggatttgaaatgatacatgaggttaaagtgcagactgtcaactTTAATTTTCATCCATACCGGATTAACCGTTTacaaattacagcactttttgtacacatTCTGgcggaccaaaagtattgggacacattcacttatatgtgtattaaagtagtaaaaagttatGTATTTGGTCCCtattcatagcacacaatgatTATATCAAGCTTCtgactctacacatttgttggatgcttttgctgtttgtttggGTTGTGTTCCAGATTATTATGTGGCCAATAGAaaataatggtaaataatgtattgtgtcattttggagtcacttttattgtaaataagaaatataatatgtttctaaacacttctacattaaagtggatgttaccatgattacggataatcctgaatgaatcgtgtgtaatgatgagtgagaaagttacaaaggcatacattaaaaaaaaaatgctaacctccccatTATTGTAAAGGTTGTCTTGAGGGTATGATATTTGTCTGTAACTTTCTCTcttatcattattcacaattcattccgGATGTGTGTGTATGACCTTGTGTGTTTTGGGGGTAAAGTCATGTAGGAAATCATTTTTGTTTGGTGAAAGTAAACAATGTTTTTTGGGAGAAAAATATCTAAGTATCTAAGTGATAATAAGCTATGATTTATATATTTCATGAATACATGTTATGATATTTACTTCAGTCATTAATGAGTCTTCCCTGTaccttatttttttaaagtattgaaTAGTATTAGTTGAATACTATTACAGTTTAAGGCACAAGTACTGTACTGTTTTTGAGTGTGGTGATATGATATAGATGCTCAATCCCAAAAGTGTAATGTAACACAGATGTTAAACACATTACTGAACAATGGCTGTAATAAACCATTTCATCCCTAT
>XM_021604260.2
AAAGGCTTCTCTCACTGCTGCAGCCGCTAACACATTAATGCGACTGGGGGGGCTgacaacagagaggaagagaaaaagagagtccAAAACGCAGCGTTATCCATTAGGACCCACATCTGGCGCTGTGGCTGTAGTTTGGCAGGAGAGAGAGCTGAGGATGTGGCGGTTGGTAGGCGTGGCCTTTCTGTGCCAGTGTGTGATTGGTCAGCTGCTGGAGGCCAAGGTGAGAGGAACTCCACCTCGTCTGATCTGCAGTGTTCCGGGGTTGCCAGGGACACCAGGTAAACCTGGCCCCAACGGGCCTCCAGGGGCCAACGGGAGCGTAGGAATCCCAGGAAGAGATGGCAGAGatggcaggagaggagagaaaggagagaagggtggagcaGGGGTAAAGGGGAAAGTCGGCCCAATGGGTAAACTTGGCCAGCGGGGTGACCGGGGTCCTGGTGGGAAGAGGGGTCCTGGTGGAGAGAGCGGGGATGGGGGCCTACCTGGTCCTCCAGGGCCCCTTGGGAAGAAAGGGGACAAGGGCCAGCGAGGGCCAAGGGGGATGGCAGGAGTCTGCCGGTGTGGCAGCCTGGTGCCTAAAGCAGCCTTCTCTGTGGGAATCACCAGTAGTTACCCTGCTGAGAAGGAACCTATCAAGTTCAACAAGGTCCTCTTCAATGAGGGGGGGCACTACAACCCAGAGACGGGTAAGTTCATCTGCGCCTACCCAGGCATCTACTACTTCTCCTATGACATCACACTGGCCAACAAGCATCTGGCCATCGGGCTGGTGCAGAACGGACAGTACCGCATCAAGACATTTGATGCAAACACAGGAAACCATGACGTGGCCTCTGGGTCCTTAGTAATGTTCCTGAACCCAGAAGACGAGGTGTGGCTGGAGATCTTCTTCAAGGACCAGAATGGCCTGTTTGCAGATGCAGGGTGGTCTGACAGCCTGTTCTCTGGATTCCTGATATATGCAGACACCAACTACCTGGACTCACTAGCAGAGGACTACGCATAGTTACTTATTACATTCAATAAAGAACTGAGAGGACTGAGTTTATAGCCTCCCCTTGATGCATTTAGAGTATCTATTTCataatgttttatttatattctatataaatacagtgagctccaaaagtattgggacagcgacatttttgttgttgttgttgttgttttggctctgtattccagcacattggatttgaaatgatacatgaggttaaagtgcagactgtcaactTTAATTTTCATCCATACCGGATTAACCGTTTacaaattacagcactttttgtacacatTCTGgcggaccaaaagtattgggacacattcacttatatgtgtattaaagtagtaaaaagttatGTATTTGGTCCCtattcatagcacacaatgatTATATCAAGCTTCtgactctacacatttgttggatgcttttgctgtttgtttggGTTGTGTTCCAGATTATTATGTGGCCAATAGAaaataatggtaaataatgtattgtgtcattttggagtcacttttattgtaaataagaaatataatatgtttctaaacacttctacattaaagtggatgttaccatgattacggataatcctgaatgaatcgtgtgtaatgatgagtgagaaagttacaaaggcatacattaaaaaaaaaatgctaacctccccatTATTGTAAAGGTTGTCTTGAGGGTATGATATTTGTCTGTAACTTTCTCTcttatcattattcacaattcattccgGATGTGTGTGTATGACCTTGTGTGTTTTGGGGGTAAAGTCATGTAGGAAATCATTTTTGTTTGGTGAAAGTAAACAATGTTTTTTGGGAGAAAAATATCTAAGTATCTAAGTGATAATAAGCTATGATTTATATATTTCATGAATACATGTTATGATATTTACTTCAGTCATTAATGAGTCTTCCCTGTaccttatttttttaaagtattgaaTAGTATTAGTTGAATACTATTACAGTTTAAGGCACAAGTACTGTACTGTTTTTGAGTGTGGTGATATGATATAGATGCTCAATCCCAAAAGTGTAATGTAACACAGATGTTAAACACATTACTGAACAATGGCTGTAATAAACCATTTCATCCCTAT
>XM_036978349.1
GCCGCTAACACATTAATGCGACTGGGGGGGCTgacaacagagaggaagagaaaaagagagtccAAAACGCAGCGTTATCCATTAGGACCCACATCTGGCGCTGTGGCTGTAGTTTGGCAGGAGAGAGGTGCGAGCTGAGGATGTGGCGGTTGGTAGGCGTGGCCTTTCTGTGCCAGTGTGTGATTGGTCAGCTGCTGGAGGCCAAGGTGAGAGGAACTCCACCTCGTCTGATCTGCAGTGTTCCGGGGTTGCCAGGGACACCAGGTAAACCTGGCCCCAACGGGCCTCCAGGGGCCAACGGGAGCGTAGGAATCCCAGGAAGAGATGGCAGAGatggcaggagaggagagaaaggagagaagggtggagcaGGGGTAAAGGGGAAAGTCGGCCCAATGGGTAAACTTGGCCAGCGGGGTGACCGGGGTCCTGGTGGGAAGAGGGGTCCTGGTGGAGAGAGCGGGGATGGGGGCCTACCTGGTCCTCCAGGGCCCCTTGGGAAGAAAGGGGACAAGGGCCAGCGAGGGCCAAGGGGGATGGCAGGAGTCTGCCGGTGTGGCAGCCTGGTGCCTAAAGCAGCCTTCTCTGTGGGAATCACCAGTAGTTACCCTGCTGAGAAGGAACCTATCAAGTTCAACAAGGTCCTCTTCAATGAGGGGGGGCACTACAACCCAGAGACGGGTAAGTTCATCTGCGCCTACCCAGGCATCTACTACTTCTCCTATGACATCACACTGGCCAACAAGCATCTGGCCATCGGGCTGGTGCAGAACGGACAGTACCGCATCAAGACATTTGATGCAAACACAGGAAACCATGACGTGGCCTCTGGGTCCTTAGTAATGTTCCTGAACCCAGAAGACGAGGTGTGGCTGGAGATCTTCTTCAAGGACCAGAATGGCCTGTTTGCAGATGCAGGGTGGTCTGACAGCCTGTTCTCTGGATTCCTGATATATGCAGACACCAACTACCTGGACTCACTAGCAGAGGACTACGCATAGTTACTTATTACATTCAATAAAGAACTGAGAGGACTGAGTTTATAGCCTCCCCTTGATGCATTTAGAGTATCTATTTCataatgttttatttatattctatataaatacagtgagctccaaaagtattgggacagcgacatttttgttgttgttgttgttgttttggctctgtattccagcacattggatttgaaatgatacatgaggttaaagtgcagactgtcaactTTAATTTTCATCCATACCGGATTAACCGTTTacaaattacagcactttttgtacacatTCTGgcggaccaaaagtattgggacacattcacttatatgtgtattaaagtagtaaaaagttatGTATTTGGTCCCtattcatagcacacaatgatTATATCAAGCTTCtgactctacacatttgttggatgcttttgctgtttgtttggGTTGTGTTCCAGATTATTATGTGGCCAATAGAaaataatggtaaataatgtattgtgtcattttggagtcacttttattgtaaataagaaatataatatgtttctaaacacttctacattaaagtggatgttaccatgattacggataatcctgaatgaatcgtgtgtaatgatgagtgagaaagttacaaaggcatacattaaaaaaaaaatgctaacctccccatTATTGTAAAGGTTGTCTTGAGGGTATGATATTTGTCTGTAACTTTCTCTcttatcattattcacaattcattccgGATGTGTGTGTATGACCTTGTGTGTTTTGGGGGTAAAGTCATGTAGGAAATCATTTTTGTTTGGTGAAAGTAAACAATGTTTTTTGGGAGAAAAATATCTAAGTATCTAAGTGATAATAAGCTATGATTTATATATTTCATGAATACATGTTATGATATTTACTTCAGTCATTAATGAGTCTTCCCTGTaccttatttttttaaagtattgaaTAGTATTAGTTGAATACTATTACAGTTTAAGGCACAAGTACTGTACTGTTTTTGAGTGTGGTGATATGATATAGATGCTCAATCCCAAAAGTGTAATGTAACACAGATGTTAAACACATTACTGAACAATGGCTGTAATAAACCATTTCATCCCTAT

Function

NR:

description
complement C1q tumor necrosis factor-related protein 7

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K24218 C1QTNF7; complement C1q and tumor necrosis factor-related protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604261.2 False 2226 mRNA 0.43 3 73514943 73524397
XM_021604260.2 False 2126 mRNA 0.44 3 73519004 73524397
XM_036978349.1 True 2109 mRNA 0.44 3 73519026 73524397

Neighbor

gene id symbol gene type direction distance location
LOC110524528 cpeb2 coding upstream 1448 73486525 ~ 73513495 (+)
LOC110524525 sel1l3 coding upstream 312249 73191132 ~ 73202694 (+)
mdp1 mgdp1 coding upstream 385372 73126632 ~ 73129571 (+)
LOC110524521 LOC106560235 coding upstream 396849 73113320 ~ 73118094 (+)
LOC110522997 dhcr24 coding upstream 411536 73093650 ~ 73103407 (+)
cc2d2a cc2d2a coding downstream 900 73525297 ~ 73557332 (+)
nek1 NA coding downstream 58985 73583382 ~ 73600500 (+)
sh3rf1 LOC106560245 coding downstream 88960 73613357 ~ 73683714 (+)
cbr4 cbr4 coding downstream 158269 73682666 ~ 73690888 (+)
anapc4 anapc4 coding downstream 266265 73790662 ~ 73802604 (+)
G437351 NA non-coding upstream 21418 73491684 ~ 73493525 (+)
G437336 NA non-coding upstream 45771 73468777 ~ 73469172 (+)
G437312 NA non-coding upstream 70539 73444146 ~ 73444404 (+)
G437303 LOC106560250 non-coding upstream 81260 73431595 ~ 73433683 (+)
G437302 NA non-coding upstream 84025 73430624 ~ 73430918 (+)
G437423 NA non-coding downstream 162079 73686476 ~ 73686746 (+)
G437401 NA non-coding downstream 167459 73691856 ~ 73693829 (+)
G437403 NA non-coding downstream 169783 73694180 ~ 73694804 (+)
G437490 NA non-coding downstream 303469 73827866 ~ 73828171 (+)
G437491 NA non-coding downstream 304265 73828662 ~ 73828866 (+)
G437327 NA other upstream 19859 73456301 ~ 73495084 (+)
G436588 NA other upstream 519208 72995499 ~ 72995735 (+)
G436403 NA other upstream 1010508 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 1827774 71552653 ~ 71687963 (+)
G434829 NA other upstream 2216043 71298615 ~ 71298900 (+)
LOC110524560 LOC106560270 other downstream 1238807 74729349 ~ 74770168 (+)
G438719 NA other downstream 1247612 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 1646907 75161317 ~ 75178287 (+)
G441903 NA other downstream 3743815 77268212 ~ 77268766 (+)
G442273 NA other downstream 4033933 77558330 ~ 77583227 (+)

Expression


Co-expression Network