LOC110524532 (LOC106560246)


Basic Information

Item Value
gene id LOC110524532
gene name LOC106560246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73557373 ~ 73574822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604266.2
TGTCTGGTACGTGGAGAAACAGTAGTGCGCATGCCCATTATCACTTCCCCAATGCTAAGCTAACTAGTTAGCATCTAATACGCGACGCAAGAAGCAACTCAAGTCAGTGCTGATTAGTTTCTATGGAGTGAAGATGGCTCCTTTTCCCGACGAGGTGGATGTTTTCACTGGGCCACACTGGCGAATGAAACAGTTGGTGGGACTTTACTGTGAGAAGCTGTCACAGACCAACTTCTCCAACAACAATGACTTCCGCTCATTTCTTCAGTCGCTGTGTGCTACCTTCAAGGAGTTCAAGATGCATGAACAGATTGAGAATGAGTACATCATCGGCCTGTTGCAGCAGCGCAGCTGCAATGTGTATAATGTACACTCCGACAACAAGCTCTCAGAGATGTTATCCCTGTTTGAGAAAGGGCTGAGAAGCGTTAAGAGTGAAAATGAGCAGCTCAACTATGCCCAGCAGCTGAAGGAAAGACTTGAGGCATTCACACAGGACTTCTTACCCCAtatgaaggaggaggaagagGTGTTCCAGCCCATGCTGATGCAGTACTTCACTTATGAGGAGCTGAAAGACATCAAGAAGCAGGTGATAGCGCAGCACAGTAGCCAGCAGCGATGGAACTGTGCAGCAGAGGTGCTGAAGGGGCTCAGTCTGTGGAGCCAGGCAGAGGAGCTGCACAAGGCCTTCAAGTATGCTGACCATGAGAAGACTGATGATGAATTGGAGAAAGAGCTGTGCTCCGCCCACATCTCCCAGCTGCCCACAGAGGTCCTGCTGTGTCTGTTCCGCTACCTGGGCCCTGAGGACCTGTGTCACTGTGGCCAGGTGTGCTCTGCCTGGTCTGACCTGGCCAAGACCGGCTCTCTGTGGAGACACCTCTACCCTGTACGCTGGGCCAGAGGGGATTACTATCGCGGTCCCCCAGATGATCTGAACCAGGAGCCGGATGAGGAGTGGGTGAAAAGTCTGCAGGATGAGGGCAAGGCCTACCAGGAGTGGGATGAGGATGCAGATGTGGATGAGTCTGATGCATCTTGTGAAGACTCCTTGGCTATAAGTGCTGCTCAGAGGGAGAAGAAGCTACTGAATGGAATGATCCAGAACCTTCTGCCAGCTGTGGGTTCCTCTGTCAGGTCCATCGTTCTGGCCTACAGCTCTACGGTCTCCAGTAAGATGGTGCGTCAGATCCTCAGTCTCTGTCCTAATCTCACCCACCTGGACCTCACTCAGACTGATGTCACAGACTCCGCCTTTGACAGTTGGTCATCTCTGTGGGCATGTTTCTCTCTGGAGCACCTAGACCTTTCAGGCTGTGAGAAGATCACTGACCGCACACTGAAGAAGCTGTCCCTGGGTCTTGGGGACCTGGCATCTCCCACCTGCTCTGACCGACAAGCCAAGCTTCTGAAGAGCCCTCCTTCTCCTATCAGTCTGCTCGACAAGCGCAGCCTCCGTCCGACTGGGCACAGCCGGCAGGTCCTGATCTTCAAGCAGTGGCCAGGGAGACTGGGCAGAGCCCCCTGCAGCCCCACCAGGGTCTGGGTCCTGGACCCCTTGGAGCTGGCTGACATCGAGGATGCTGCGGAGTGGAACCGACGCAGGGGAGTGTCTACCCCTGAGGTGCGGGGCTTTGTGGAGACTCAGCCAGGGGGATTGTCGTGTTGCTGTAGGAGAAGTAGGGGGGGCTTCAGGACTTGCTTTAGCACCTCCTACAGGCAGCAGCAGTATGGGCTTGGGGAGGCCGGCTGTGGCCATTCCACCTGCTGCACTGGTGAGACGGCCCTGAGGACTTTAGGAGGGCTGCAGTATGAGTCTCACACCACCAGGGGCAGTGCAGGGGCAGAGTTTCGGACTAAATGCTCCTCTGGGGGCCAGTTGTGCCTGGAGTGTGACAACAGAACTGATCAGTCAGACGGTCGGCGCTCACTAAGGTTCCTCAGCCTGTCTGGATGCTATCAGGTCACAGACCTGGGCTTGAGggcacTGTCTCAGCGTGGAGGGCTTCCTCACCTGGAGCATCTGAACCTGTCTGGATGTCTCCTCATCACTGAGGTGgggctacaggagctggtgtcaGCCTGTCCTGCCCTCAATGATGAACACTTCTACTACTGCGACAACATCAACGGTCCTCACGCTGACACGGCCAGCGGCTGCCAGAACCTGCAGTGTGGCTTCAGGGTGTGCTGCCGCTCTGGAGAGTGACCTTTGACCCAGctccacaacccccccccccccccacccaaaggTTCCTCATCTGCACTTTAATCACCTGGGAATAAACCAATCTCTGTACTTTGTCACTTAAAATAGTTTGTAGATATACAAAAATAAACTCGTGACATTTCCATCTGTTTTTAGAAAAATATGGGTGTTGGATGTATGAAGTATCTGCAAATGTAAATTCTAGTTCCTTATTGAGAAAGTGTTCCTTTAACATTTTAATTTGAGTTGCAAAAAAGCAGATGTTATACGTGACCAAGTACTTGTTGTTTCTGTAGTGAATTGAACCAGGTATCCTGTAGTTTTTGACTAGGTCCACCACCTCTGCTCCTACTTCCTTGTTTTAGATCTCTGATTGCTGTAAGTCTTAATTGGTTGATTTATTGAAGTTAGAAACATCAGATAATTCAATGTTGAGATGTGAGTTCTCTTCACATGATACATGTTGGGAGTGGTGATTCACACGGTGGCAGATGGTTTGTAACATCAGTGACTTAAGAATCTGAAGAAAACTGCACAGTCCTGGAGAACACTGATCATGTCACTTCTAGAGATGACAGGTGGCCAGATCACTGTTAGAATTGCCTCAGATGTGGGCAGGCATTTCAGGTATAGAGTTATGGTGGTATTTGTCTGCAGGTAATACCCTTATTCCAAATCTTGGATTTCATAATGCTTCTCATCTTTCTCCTTTGTGGCTAGAAACATTGGATTGTGATAatattttccctttgtcattgtGTAATGAATCAATGGTAAGGGCACTGAAATTCACATAAGCTCTCCCAGTTACTTCACAAAATGATCTAGACATACAGTTGAATGACAATGGAGCAGATTTGAGAAATAGTAACTACTCTGATCCACTGAGTGCTGGTCTTTATACATAGCACAACTTCTGGAGACCCATTATTTGCTTGTTCAAACAATCTGCATGAGAAGTTCTATTGGTTATGAACAATAAAAGTATATTGGATTTAAAGTGAAA

Function

NR:

description
F-box/LRR-repeat protein 5

GO:

id name namespace
GO:0055072 iron ion homeostasis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10271 FBXL5; F-box and leucine-rich repeat protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604266.2 True 3218 mRNA 0.50 11 73557373 73574822

Neighbor

gene id symbol gene type direction distance location
LOC110524527 LOC106560250 coding downstream 112859 73431563 ~ 73444514 (-)
LOC110524526 LOC106584218 coding downstream 135690 73370439 ~ 73421683 (-)
LOC100135942 LOC106560239 coding downstream 339215 73207860 ~ 73218158 (-)
LOC110522885 LOC106560352 coding downstream 368435 73188025 ~ 73188938 (-)
LOC110524524 LOC100194696 coding downstream 376484 73174706 ~ 73180889 (-)
LOC110524534 LOC106560249 coding upstream 5077 73579899 ~ 73583099 (-)
palld LOC106560254 coding upstream 117034 73691856 ~ 73787594 (-)
LOC118964642 LOC106560258 coding upstream 270030 73844674 ~ 73847759 (-)
fryl NA coding upstream 276092 73850914 ~ 73953877 (-)
ociad2 ocad2 coding upstream 394769 73969591 ~ 73972130 (-)
G437680 cc2d2a non-coding downstream 25177 73531608 ~ 73532196 (-)
G437660 LOC106560248 non-coding downstream 68918 73486667 ~ 73488455 (-)
G437318 NA non-coding downstream 116837 73440244 ~ 73440536 (-)
LOC110524523 LOC106560237 non-coding downstream 393989 73132102 ~ 73163431 (-)
G437075 NA non-coding downstream 431009 73125420 ~ 73126364 (-)
G437705 NA non-coding upstream 19272 73594094 ~ 73594489 (-)
G437703 NA non-coding upstream 22555 73597377 ~ 73598010 (-)
G437709 NA non-coding upstream 26249 73601071 ~ 73601626 (-)
G437710 NA non-coding upstream 26862 73601684 ~ 73601912 (-)
G437713 NA non-coding upstream 30972 73605794 ~ 73606475 (-)
G437079 NA other downstream 410245 73146358 ~ 73147128 (-)
G437074 NA other downstream 432335 73122112 ~ 73125038 (-)
G437054 NA other downstream 462037 73094794 ~ 73095336 (-)
G436873 NA other downstream 781505 72774561 ~ 72775868 (-)
G439002 NA other upstream 1290437 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 1388638 74961377 ~ 74968484 (-)
G439594 NA other upstream 1688651 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 1996427 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 3011636 76586458 ~ 76590370 (-)

Expression


Co-expression Network