LOC110524534 (LOC106560249)


Basic Information

Item Value
gene id LOC110524534
gene name LOC106560249
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73579899 ~ 73583099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604281.2
CGTTCTCCTTAGCAACCATAAGGCGCAAAGAAAAATAGTACTGTAGCTAGTTTCTCTGAGAGAAGAGAAACTATATTTCACGCCCCAGTTGGAGATCTTGATAAAACCACACCCCTCAGCGGTGTTGTCGAAACAGGAAATATAATTTTTCAAAACCAATAGGAATTCAGATAGTTGCACTTCCCCTCGTACCAGCCCGGacacacattacatacattatTCTCGGCCACAAAATGGCTGAGTCGTATGCATTATTTGGGGAAGACCAATTCTCTTGTTCAATCTGTCTGGATCTACTGAAGAACCCTGTGACCATTCCTTGTGGACACAGTTACTGCATGGGCTGTATAAAGGACTATTGGGATCTAAATGACCGCATGGGTGTCTACGTCTGCCCTCAGTGCAGACAGACCTTCACCCCAAGGCCTGCTCTGAGCAAAAATACCATGTTTGCAGAGGTAGTGGAAAGACTGAAGAAGATTGAAGAGTTCCAAGCTGACCCTAACGTTCTTTGTTATGCTAAACCAGGGGATATTGAGTGTGATGTCTGTGGTGGGAGAAAACAGAAAGCCATTAAGTCTTGTCTTCTATGTCTGGCCTCATACTGTGAAACACACCTCAAGCTTCATGACAAACTCAACCCTGGAAAACGACACACACTTGTGGAAGCCTCCATACAGCTTCAGGAGAAGATCTGCTCTCAGCATGACAAACTACTGGAAGTTTACTGCCGTACTGATCAACGTTGTATCTGTTATGAGTGTTTGATGGGTGTACACAAAGGCCACGAAACAGTTTCAGCTGCAGCTGAAGGCACTGCAAAACAGAAAGAACTGAAGGAGACACACAGGAAATACAAGCAAATAATCGCCAGGAAAGAGAAGGAACTATTGTGGTTGAAGCAGGCCATGAGGTCTCTCACATACTCCGCACAGATAGCCGTGGAAGACAGTGACAAGGTCTTTACTGAAATAATCTGCTCTGTTGAGAAGTGGTACTCTGATGTGAAAAGACTGATCAGATCACAGGAGAAGGCTGCTGTTGGCCCGGCTGAGGAGCAGGTTGACCAACTGCAAAGGGAGATTATAGagctgaggaggagagatactgagCTTGAGCAGTTGTCAAAAACAGAAGATTTTATTATTTTCCTCCAGagATGTCAATCTGTCCCAGCCCTCCCTGGATATGGAGACACATCCAGCATCAATGTGAGTCAGCAAGTCTCTTTTGAAGGTGTGAAGAAAACTGTGGCTGAGCTGAAACAGCGATTGGAGGACTTTTGCGAAGGGGCCTTTGCAAACATCTCTAAAAAAGTACAGGATATTCATATTCTGCAGGCATCAAAGCCTTGTCCACCTCTACCCCAGGTAACAGACAAGTGTGTGGAGAGTAAAGAACCAACGACAAGAGAGGAGTTTTTGAAATATGCCTGTCAGCTCACATTGGACCAAAACACTGCACATAAAAACCTCCTTCTCTCTAAAGATAACAAAGTGGCTGGATGGAATGATTTTGCACTGCCTTATCCTGACCACCCAGATAGATTTGATAACATGCCTGTGGTACTGTGCAGAGAGGCTTTGACAgggcgctgttactgggaggttgAATGGGATGGAATACAGGCTATCATAGCTGTATCATATAAGGGGATAAACAGGAAAAAAAAACTCAGCCCCCCTGATGCATTCTCCAAATTTCTAGAATTTTATGATCAATCCTGGAGTTTGGACTGGAATATAGCCCAAGTCTGTGAGAATAAGAAACAGATTCAATTAACTGCTTGGTCCTCTAGGAGAATAGGACTGTTCTTGGATCACAAGGCAGGAACTCTAGCATTTTACAACATTGCTGATAAAATGACCCTCATCTATAGAGTAAAAACAACATTCACTCAACCACTCTATCCTGCTTTCTGGATCAAAATACAGTCCAAGATAAAATTGTGCCCCCTGAAATAAATTTGAATGGCTGATTTCAACACAATCCATTTGCAGAGTAGGGCAAGGCAGAAGGAGTAGTTTACATGTATCTTCAAACTGTTTATTGTACATTGAGAAAAATATGGGAATTGTGTATaatgtgctttaaaaaaaaactgcattCCACCAAGTGTACAAATGATTTTATGAAAAAAGTGGTAATTGTATATACTACCTACTTTTATGCaagaatgaaataaataaataaatatgctaa
>XM_036978348.1
TGGACGTTCTCCTTAGCAACCATAAGGCGCAAAGAAAAATAGTACTGTAGCTAGTTTCTCTGAGAGAAGAGAAACTATATTTCACGCCCCAGTTGGAGATCTTGATAAAACCACACCCCTCAGCGGTGTTGTCGAAACAGGAAATATAATTTTTCAAAACCAATAGGAATTCAGATAGTTGCACTTCCCCTCGTACCAGCCCGGacacacattacatacattatTCTCGGCCACAAAATGGCTGAGTCGTATGCATTATTTGGGGAAGACCAATTCTCTTGTTCAATCTGTCTGGATCTACTGAAGAACCCTGTGACCATTCCTTGTGGACACAGTTACTGCATGGGCTGTATAAAGGACTATTGGGATCTAAATGACCGCATGGGTGTCTACGTCTGCCCTCAGTGCAGACAGACCTTCACCCCAAGGCCTGCTCTGAGCAAAAATACCATGTTTGCAGAGGTAGTGGAAAGACTGAAGAAGATTGAAGAGTTCCAAGCTGACCCTAACGTTCTTTGTTATGCTAAACCAGGGGATATTGAGTGTGATGTCTGTGGTGGGAGAAAACAGAAAGCCATTAAGTCTTGTCTTCTATGTCTGGCCTCATACTGTGAAACACACCTCAAGCTTCATGACAAACTCAACCCTGGAAAACGACACACACTTGTGGAAGCCTCCATACAGCTTCAGGAGAAGATCTGCTCTCAGCATGACAAACTACTGGAAGTTTACTGCCGTACTGATCAACGTTGTATCTGTTATGAGTGTTTGATGGGTGTACACAAAGGCCACGAAACAGTTTCAGCTGCAGCTGAAGGCACTGCAAAACAGAAAGAACTGAAGGAGACACACAGGAAATACAAGCAAATAATCGCCAGGAAAGAGAAGGAACTATTGTGGTTGAAGCAGGCCATGAGGTCTCTCACATACTCCGCACAGATAGCCGTGGAAGACAGTGACAAGGTCTTTACTGAAATAATCTGCTCTGTTGAGAAGTGGTACTCTGATGTGAAAAGACTGATCAGATCACAGGAGAAGGCTGCTGTTGGCCCGGCTGAGGAGCAGGTTGACCAACTGCAAAGGGAGATTATAGagctgaggaggagagatactgagCTTGAGCAGTTGTCAAAAACAGAAGATTTTATTATTTTCCTCCAGGACTCAGGACCCAACTTGAATatgaagattgtgtgtgtgtgtgtgtgtctttagagATGTCAATCTGTCCCAGCCCTCCCTGGATATGGAGACACATCCAGCATCAATGTGAGTCAGCAAGTCTCTTTTGAAGGTGTGAAGAAAACTGTGGCTGAGCTGAAACAGCGATTGGAGGACTTTTGCGAAGGGGCCTTTGCAAACATCTCTAAAAAAGTACAGGATATTCATATTCTGCAGGCATCAAAGCCTTGTCCACCTCTACCCCAGGTAACAGACAAGTGTGTGGAGAGTAAAGAACCAACGACAAGAGAGGAGTTTTTGAAATATGCCTGTCAGCTCACATTGGAC

Function

NR:

description
tripartite motif-containing protein 16-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604281.2 False 2202 mRNA 0.42 7 73579899 73583095
XM_036978348.1 True 1509 mRNA 0.45 7 73580650 73583099

Neighbor

gene id symbol gene type direction distance location
LOC110524532 LOC106560246 coding downstream 5077 73557373 ~ 73574822 (-)
LOC110524527 LOC106560250 coding downstream 135385 73431563 ~ 73444514 (-)
LOC110524526 LOC106584218 coding downstream 158216 73370439 ~ 73421683 (-)
LOC100135942 LOC106560239 coding downstream 361741 73207860 ~ 73218158 (-)
LOC110522885 LOC106560352 coding downstream 390961 73188025 ~ 73188938 (-)
palld LOC106560254 coding upstream 108757 73691856 ~ 73787594 (-)
LOC118964642 LOC106560258 coding upstream 261753 73844674 ~ 73847759 (-)
fryl NA coding upstream 267815 73850914 ~ 73953877 (-)
ociad2 ocad2 coding upstream 386492 73969591 ~ 73972130 (-)
LOC110524549 LOC106560259 coding upstream 410884 73993983 ~ 74008569 (-)
G437680 cc2d2a non-coding downstream 47703 73531608 ~ 73532196 (-)
G437660 LOC106560248 non-coding downstream 91444 73486667 ~ 73488455 (-)
G437318 NA non-coding downstream 139363 73440244 ~ 73440536 (-)
LOC110524523 LOC106560237 non-coding downstream 416515 73132102 ~ 73163431 (-)
G437075 NA non-coding downstream 453535 73125420 ~ 73126364 (-)
G437705 NA non-coding upstream 10995 73594094 ~ 73594489 (-)
G437703 NA non-coding upstream 14278 73597377 ~ 73598010 (-)
G437709 NA non-coding upstream 17972 73601071 ~ 73601626 (-)
G437710 NA non-coding upstream 18585 73601684 ~ 73601912 (-)
G437713 NA non-coding upstream 22695 73605794 ~ 73606475 (-)
G437079 NA other downstream 432771 73146358 ~ 73147128 (-)
G437074 NA other downstream 454861 73122112 ~ 73125038 (-)
G437054 NA other downstream 484563 73094794 ~ 73095336 (-)
G436873 NA other downstream 804031 72774561 ~ 72775868 (-)
G439002 NA other upstream 1282160 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 1380361 74961377 ~ 74968484 (-)
G439594 NA other upstream 1680374 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 1988150 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 3003359 76586458 ~ 76590370 (-)

Expression


Co-expression Network