LOC118964642 (LOC106560258)


Basic Information

Item Value
gene id LOC118964642
gene name LOC106560258
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73844674 ~ 73847759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051856.1
AAGGTGTCAACTATAAATGACATGCAGGAGTTTGCAGAGATTTTTAGTTTTTAGTTTTGCATGACGCCAACTTTTACgtaattagcattttcgaattAGAAAAGAGCGACTATTGATAAATCTTGCCAatagagatttacatggttatctaAACGTCACGCCACGGTATGCTTACGTGAAACAGCAtatctaaaatcccctatgggaaaaagtCCAGTTTCCATATTGTTATATTGTCCATCTAAACGTTGACAACGTTCTACACAGCTTCCACCTTTAAAATGAGTCATGTCAATCTAAAAAGTGGGTAGGTCTGTTACAGCCAAGTTGACTATTCTAAATGAGTGAGTATGGAGCTAACCTGAAACCTCACGCGGGCCTTGATTTTCGAGCCATCCTGGCAGGCTTTGACGCCCTCGGTCATAACTGATTGGCCAGGATGAAGATGCCAGCCTCGGCTGCCTGGAAGAGGGCGTAGAGCAGAGGGAACATATACATGCCCCCCATCAGCTGTGGTGGGAAGGTCATCTTCAGGATGGCTGTGCAGAGCTGCACGTTCTGGCACCCGGTCTCCAGGGACACGGTCCTGCGGATGTTGGGCGGGAGATCGAAGAGGGTGGCCAGGCCGTAGCCTGCAGCGTAGCCACAGGCAGGCATCAGGACAGCTACCACATagacagatggagggatggtggCCAGCAGCTCTGGCCCCAACATGACCCCCGTCATGATGAACAGCATCACCAGGGTCACCAGCAGAGACCACAGGGACACCTGGGGAAACATACCCCATGGGGTCAACACAAGTTTTATGACAGGCCTTCTCTATATCCAGATTGTTTTAGGAAGGTGGAAAGGGAAGGAACAATGGACTAATTTTCAGGATATTCAAACAGAACCAATATTATAAAGGACCAAGGGAAAGCCACAAGTAAGCATGGTCCACTTAAATCTATCTGATTTCATGTATCCCTTCCCCTCTGTGGATTTCTCATCCAGTTCTATGATCCCCTCTGTGGATTTCTTATCCAGTTCTATGATTCTGTcatgcctctccctctcctggttGAGCTGCCTTTAGATGAGTTCATCTGAAGTGGAAGGGCTCTCCCTGACTCTACAGTGCATCTCTGCCTCTGATGTTACCTTTGTCTCAACAGAAAGCTAGACATGCACAATGTCACACTCTGATGACACACAGTCAAAAGGTACACAACTGACtattataaaaaatgtaatttattttACTAGCCAAACTACCccgttttaataaaaaaatatatacta
>TU495793
ATTTTTAGTTTTTAGTTTTGCATGACGCCAACTTTTACgtaattagcattttcgaattAGAAAAGAGCGACTATTGATAAATCTTGCCAatagagatttacatggttatctaAACGTCACGCCACGGTATGCTTACGTGAAACAGCAtatctaaaatcccctatgggaaaaagtCCAGTTTCCATATTGTTATATTGTCCATCTAAACGTTGACAACGTTCTACACAGCTTCCACCTTTAAAATGAGTCATGTCAATCTAAAAAGTGGGTAGGTCTGTTACAGCCAAGTTGACTATTCTAAATGAGTGAGTATGGAGCTAACCTGAAACCTCACGCGGGCCTTGATTTTCGAGCCATCCTGGCAGGCTTTGACGCCCTCGGTCATAACTGATTGGTCAGTATTACTAGCTTTTGTATGTGGCCAAGTATTTTCGTCTTTTGCCTTTTCTGTTTTGTCCTCAGACTTCTCACCTTCATCCCTTTTCCTAATCTTAACGGTTTCAGGTGGGTCACCGGTCTGTGCTTGTCTCGACTCAATTTTGTCATTCTAGAAAGGATGCAAGTCTCCTAGACGCGATAGGGGAGTAGACTGCCAGAGTGCGAGGGTAACGCACCCCTCCAACAGAACTCCCTGGACTACCGGGTGTCTGggtctcttgtcttctcttgcGCAAAGTGTCTCGCTTTCTGGCTATGAGGGTCCGTGGGCCGAGGGAACACTGCACAGAAACATCCTTCGGATTGACCTGCACCGCGACGTCTTTGGTGTTTGCTTTCCGTAGCCTCGGATTAAGATTGGGGTTTATTTGGGATAAGAGGAATTTAAATTGCGCGCGATGGTGGTTATCAATGTACGTCTGCATAGTTGGCCAAATAATTTTTGTTTCTCCAGCccgcacattttggtttttgatACCTGCCAGAGTACGGGTTGTAAAATGAATATAAATAGTTGTCGATTGACTCATCTAAATATGTAGCCATTTTTGCTAAACCAACTCGGGTTGTTTGGTTGACAAATTTAAATAGATTGACGACACACGATTTCATTAATTGTAATCAGGTGTGGCAGTCCTCCTAATTGGCCTCAAAAACCAATCACTCTGAAGCCGCAAATAACATGAAACTCACAAGATGACAGAATGCAGAAGTGTCAGTTGATTTTTTTGTTCATATCTATTTTTAATATACATTGATAAACATATACACAGTGGTACATTTTACAGACAGTTTGTCATCGTACATATGGTGATATGGAGTAGTTATATTAGGCTCTGTTGAAGGATTGTACTGCATGATTTGTCTCTTGAACTGAAACCATAGGCACCAAAAACAAGTGGACTTGAGCACTTGCTTTGAATGCAAAATAATAATTGACAATGTTTGGTCATGTAGATCAGATGATCATGTTAGACTTTACAAGCAAGTGAGATGATGACACCTTTGTGAAATGTTGTACTGCATCTGTGATGTGAGAGGGGATGAATATAGAGATTATTTTTGATGATTTCCATTTTCACAGCCATTTTCTTTCATAAACAATATGTTGAAGTAAGCCCAGATATACTAGCATTTTTTACTTCAATTAACCTTTTCATATTTTTTCATGGTCATATGGCTTATGCTTGCTTCAATTATATTTAGTAACTTTCACTCCCCCCTAATCTTGAGTGTTCTTTTctgagactacacacacacagggtagctTCCCTGCAGTCAAAGATTGCTGACATGACAAGGATTTTTTGTAGAGATGCCATAAGCAGACCTGAATGTCATTATGTATGCACGACATCACCTACGGTGGGCCATCATTGTATCATGCACACTAAACAGGAGTAGCATCCGGACAAGGCTCTAACATGATGAGATTTGGGTCACTTGTGGTCACCGCCCCGTAAGAAGTGTCAAAGCCCATATCTTCATCTTCAAACCTATTATATCCAATATCCCCATTGTCCCCCAGTGGGTTTGTGTCTGGTTTGTGTAAAACCTCTTTCCTGTACATCCGGTAGGCCAGGATGAAGATGCCAGCCTCGGCTGCCTGGAAGAGGGCGTAGAGCAGAGGGAACATATACATGCCCCCCATCAGCTGTGGTGGGAAGGTCATCTTCAGGATGGCTGTGCAGAGCTGCACGTTCTGGCACCCGGTCTCCAGGGACACGGTCCTGCGGATGTTGGGCGGGAGATCGAAGAGGGTGGCCAGGCCGTAGCCTGCAGCGTAGCCACAGGCAGGCATCAGGACAGCTACCACATagacagatggagggatggtggCCAGCAGCTCTGGCCCCAACATGACCCCCGTCATGATGAACAGCATCACCAGGGTCACCAGCAGAGACCACAGGGACACCTGGGGAAACATACCCCATGGGGTCAACACAAGTTTTATGACAGGCCTTCTCTATATCCAGATTGTTTTAGGAAGGTGGAAAGGGAAGGAACAATGGACTAATTTTCAGGATATTCAAACAGAACCAATATTATAAAGGACCAAGGGAAAGCCACAAGTAAGCATGGTCCACTTAAATCTATCTGATTTCATGTATCCCTTCCCCTCTGTGGATTTCTCATCCAGTTCTATGATCCCCTCTGTGGATTTCTTATCCAGTTCTATGATTCTGTcatgcctctccctctcctggttGAGCTGCCTTTAGATGAGTTCATCTGAAGTGGAAGGGCTCTCCCTGACTCTACAGTGCATCTCTGCCTCTGATGTTACCTTTGTCTCAACAGAAAGCTAGACATGCACAATGTCACACTCTGATGACACACAGTCAAAAGGTACACAACTGACtattataaaaaatgtaatttattttACTAGCCAAACTACCccgttttaataaaaaaatatatactatttTTATCTTGTATTTTATTCTTAAATTCTTAAGGTGAGAATTAGAATGAGTTATGTAATTCTAAATTGCCCTTTCCCTTTTTAGAGTTTAGTATTGAAATATGAAGTAACACTAAGTTCATCAATCATTTATATTAGGCAGGCCCTGCTATATAAAAAGTACTAAaggaatgtaaaa
>TU495794
TGCATAGTTGGCCAAATAATTTTTGTTTCTCCAGCccgcacattttggtttttgatACCTGCCAGAGTACGGGTTGTAAAATGAATATAAATAGTTGTCGATTGACTCATCTAAATATGTAGCCATTTTTGCTAAACCAACTCGGGTTGTTTGGTTGACAAATTTAAATAGATTGACGACACACGATTTCATTAATTGTAATCAGGTGTGGCAGTCCTCCTAATTGGCCTCAAAAACCAATCACTCTGAAGCCGCAAATAACATGAAACTCACAAGATGACAGAATGCAGAAGTGTCAGTTGATTTTTTTGTTCATATCTATTTTTAATATACATTGATAAACATATACACAGTGGTACATTTTACAGACAGTTTGTCATCGTACATATGGTGATATGGAGTAGTTATATTAGGCTCTGTTGAAGGATTGTACTGCATGATTTGTCTCTTGAACTGAAACCATAGGCACCAAAAACAAGTGGACTTGAGCACTTGCTTTGAATGCAAAATAATAATTGACAATGTTTGGTCATGTAGATCAGATGATCATGTTAGACTTTACAAGCAAGTGAGATGATGACACCTTTGTGAAATGTTGTACTGCATCTGTGATGTGAGAGGGGATGAATATAGAGATTATTTTTGATGATTTCCATTTTCACAGCCATTTTCTTTCATAAACAATATGTTGAAGTAAGCCCAGATATACTAGCATTTTTTACTTCAATTAACCTTTTCATATTTTTTCATGGTCATATGGCTTATGCTTGCTTCAATTATATTTAGTAACTTTCACTCCCCCCTAATCTTGAGTGTTCTTTTctgagactacacacacacagggtagctTCCCTGCAGTCAAAGATTGCTGACATGACAAGGATTTTTTGTAGAGATGCCATAAGCAGACCTGAATGTCATTATGTATGCACGACATCACCTACGGTGGGCCATCATTGTATCATGCACACTAAACAGGAGTAGCATCCGGACAAGGCTCTAACATGATGAGATTTGGGTCACTTGTGGTCACCGCCCCGTAAGAAGTGTCAAAGCCCATATCTTCATCTTCAAACCTATTATATCCAATATCCCCATTGTCCCCCAGTGGGTTTGTGTCTGGTTTGTGTAAAACCTCTTTCCTGTACATCCGGTAGGCCAGGATGAAGATGCCAGCCTCGGCTGCCTGGAAGAGGGCGTAGAGCAGAGGGAACATATACATGCCCCCCATCAGCTGTGGTGGGAAGGTCATCTTCAGGATGGCTGTGCAGAGCTGCACGTTCTGGCACCCGGTCTCCAGGGACACGGTCCTGCGGATGTTGGGCGGGAGATCGAAGAGGGTGGCCAGGCCGTAGCCTGCAGCGTAGCCACAGGCAGGCATCAGGACAGCTACCACATagacagatggagggatggtggCCAGCAGCTCTGGCCCCAACATGACCCCCGTCATGATGAACAGCATCACCAGGGTCACCAGCAGAGACCACAGGGACACCTGGGGAAACATACCCCATGGGGTCAACACAAGTTTTATGACAGGCCTTCTCTATATCCAGATTGTTTTAGGAAGGTGGAAAGGGAAGGAACAATGGACTAATTTTCAGGATATTCAAACAGAACCAATATTATAAAGGACCAAGGGAAAGCCACAAGTAAGCATGGTCCACTTAAATCTATCTGATTTCATGTATCCCTTCCCCTCTGTGGATTTCTCATCCAGTTCTATGATCCCCTCTGTGGATTTCTTATCCAGTTCTATGATTCTGTcatgcctctccctctcctggttGAGCTGCCTTTAGATGAGTTCATCTGAAGTGGAAGGGCTCTCCCTGACTCTACAGTGCATCTCTGCCTCTGATGTTACCTTTGTCTCAACAGAAAGCTAGACATGCACAATGTCACACTCTGATGACACACAGTCAAAAGGTACACAACTGACtattataaaaaatgtaatttattttACTAGCCAAACTACCccgttttaataaaaaaatatatactatttTTATCTTGTATTTTATTCTTAAATTCTTAAGGTGAGAATTAGAATGAGTTATGTAATTCTAAATTGCCCTTTCCCTTTTTAGAGTTTAGTATTGAAATATGAAGTAACACTAAGTTCATCAATCATTTATATTAGGCAGGCCCTGCTATATAAAAAGTACTAAaggaatgtaaaa
>TU495795
TGCATAGTTGGCCAAATAATTTTTGTTTCTCCAGCccgcacattttggtttttgatACCTGCCAGAGTACGGGTTGTAAAATGAATATAAATAGTTGTCGATTGACTCATCTAAATATGTAGCCATTTTTGCTAAACCAACTCGGGTTGTTTGGTTGACAAATTTAAATAGATTGACGACACACGATTTCATTAATTGTAATCAGGTGTGGCAGTCCTCCTAATTGGCCTCAAAAACCAATCACTCTGAAGCCGCAAATAACATGAAACTCACAAGATGACAGAATGCAGAAGTGTCAGTTGATTTTTTTGTTCATATCTATTTTTAATATACATTGATAAACATATACACAGTGGTACATTTTACAGACAGTTTGTCATCGTACATATGGTGATATGGAGTAGTTATATTAGGCTCTGTTGAAGGATTGTACTGCATGATTTGTCTCTTGAACTGAAACCATAGGCACCAAAAACAAGTGGACTTGAGCACTTGCTTTGAATGCAAAATAATAATTGACAATGTTTGGTCATGTAGATCAGATGATCATGTTAGACTTTACAAGCAAGTGAGATGATGACACCTTTGTGAAATGTTGTACTGCATCTGTGATGTGAGAGGGGATGAATATAGAGATTATTTTTGATGATTTCCATTTTCACAGCCATTTTCTTTCATAAACAATATGTTGAAGTAAGCCCAGATATACTAGCATTTTTTACTTCAATTAACCTTTTCATATTTTTTCAT

Function

NR:

description
PREDICTED: zygote arrest protein 1-like isoform X2

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0008508 bile acid molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051856.1 False 1287 mRNA 0.46 2 73844852 73847759
TU495793 False 3047 lncRNA 0.42 1 73844674 73847720
TU495794 False 2189 lncRNA 0.41 1 73844674 73846862
TU495795 True 750 lncRNA 0.34 1 73846113 73846862

Neighbor

gene id symbol gene type direction distance location
palld LOC106560254 coding downstream 57258 73691856 ~ 73787594 (-)
LOC110524534 LOC106560249 coding downstream 261753 73579899 ~ 73583099 (-)
LOC110524532 LOC106560246 coding downstream 270030 73557373 ~ 73574822 (-)
LOC110524527 LOC106560250 coding downstream 400338 73431563 ~ 73444514 (-)
LOC110524526 LOC106584218 coding downstream 423169 73370439 ~ 73421683 (-)
fryl NA coding upstream 3155 73850914 ~ 73953877 (-)
ociad2 ocad2 coding upstream 121832 73969591 ~ 73972130 (-)
LOC110524549 LOC106560259 coding upstream 146224 73993983 ~ 74008569 (-)
sgcb LOC106560263 coding upstream 161283 74009042 ~ 74016038 (-)
LOC110523002 LOC106560265 coding upstream 214469 74062228 ~ 74075591 (-)
G437878 NA non-coding downstream 4666 73839901 ~ 73840186 (-)
G437873 NA non-coding downstream 12160 73832488 ~ 73832692 (-)
G437807 NA non-coding downstream 95788 73746879 ~ 73749064 (-)
G437771 NA non-coding downstream 158981 73685559 ~ 73685871 (-)
G437713 NA non-coding downstream 238377 73605794 ~ 73606475 (-)
G437924 NA non-coding upstream 171212 74018971 ~ 74019172 (-)
G437926 NA non-coding upstream 173574 74021333 ~ 74021541 (-)
G437929 NA non-coding upstream 175672 74023431 ~ 74023643 (-)
G437933 NA non-coding upstream 184485 74032244 ~ 74032596 (-)
G437934 NA non-coding upstream 186544 74034303 ~ 74034613 (-)
G437079 NA other downstream 697724 73146358 ~ 73147128 (-)
G437074 NA other downstream 719814 73122112 ~ 73125038 (-)
G437054 NA other downstream 749516 73094794 ~ 73095336 (-)
G436873 NA other downstream 1068984 72774561 ~ 72775868 (-)
G439002 NA other upstream 1017500 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 1115701 74961377 ~ 74968484 (-)
G439594 NA other upstream 1415714 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 1723490 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 2738699 76586458 ~ 76590370 (-)

Expression


Co-expression Network