LOC110524549 (LOC106560259)


Basic Information

Item Value
gene id LOC110524549
gene name LOC106560259
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 73993983 ~ 74008569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604321.2
tgggtttggcggacgctaggagaacgctacctgcccgactgtatagtgccaactgtacagtttggtggaggaggaataatggtctggtgctgtttttcatggttcgggctaggccccttagttccagtgaagggaaatcttaacgctacagcatacaatgacatactAGACAATTGTGTACTTCCAACTaagtggcaacagtttgggcaaggccctttcctgtttcagcatgacaatgcccccatgcacaaagcgaggttcatacagaaattgtttgtcaagatcggtgtggaagaacttgactggcctgcacaaaaccctgacctcaaccccatcgaacatctttgggattaattggaacgccgactgtgagccagacctaatcgccagTGCCTGACCtctctaatgctcttgtggctgaatggaagcaagtccccgaagCAATGTTCcaccatctagtggaaagcctccctcaagagtggaggctgttatggcagcaaagggggaccaactccatattaatgcccatgattttgggatgagatgttcgacgagcaggtttccacatacttttggtcatgtagtgtacttgcACTAAGATACACTACAGATTAATGCAGTCAGCtgttcttttttctttttctgtGGAATTCATTAAGCTTTTGTTTGTTTCAATTATATTTTGTTAACATGGGTTTGAAACATACTATTGAGTGATTTTGTGCAATATAACATGAAGTGGCAATACTATAAGGGTGATGTTTATCTATTTTGAGCTCATTGGCATTTGTCTAACATGCTTAAATTGTGTATTCAATTATTTCTACGGTAACAATGTGCTTGGAGAAATGTGATCATCATCTCAAGCAGCAATATGGACTCCATGCTTTAATAGATGTAGGAATTCATTGTTTTTTCCAATGGAACCTTGAGAATGAGCTTTTGGAAAATATCAATGGTTTAACTTATGTTTGTTTAAATAAAGGGATATTCTGTGTTTGGAAAGCCCTGTAATCTGTATTGTTTCTTGTCTCTTGCAGTTTTATTTTCACATTTGAAAACTGCCCTATTTGTACCATATCTCACAATGCCCACTTGGAAGTGTCAATGCATTTACAATGTACTAGCTATATTCTACGTCTACTACATTTACAGTGTACTAGCTATATTCTACGTCTACTACATTTACAGTGTACTAGCTATATTCTACGTCTACTACATTTACAGTGTACTAGCTATATTCTACGTCTACTACATTTACAGTGTACTAGCTATATTCTACATCTACTACATTTACAGTGTACTAGCTATATTCTACATCTACTACATTTACAGTGTACTAGCTATATTCTACATCTACTACATTTACAGTGTACTAGCTATATTCTACATCTACTACATTTACAGTGTACTAGCTATATTCTACATCTACTACATTTACAGTGTACTAGCTATATTCTACATCTACTACATTTACAGTGTACTAGCTATATTCTACGTCTACTACATTTTACACAGTAAAAGGGCACAATAACCAAGATTACTTTTATAGCATGAAATCTGTTCAAATCCAGTTATTTATCAATCAATAATAAATCCAAGCTATGGCGTAGTTGTCCTTTTCATTAGTTTCTGGCAGCACAGTTAACTGAAAGACAAGAAAACAACATCCTGGTGAGACATTAACCATGCCATGTGAATGATTGAGGGAATCAGCATAACGTTTATGCCATTGTTGTGAATGCATGTCTGACTCAACATGTCAATACACACTGAAGACTTTGATCTGAAACTACAGGAGAAAAAGTTGTTGAAATCTGCTACCTTTGGCAATGTACTTGGGAGAGACTGAAAGTCAAGTTCGTTTTGGTTGTATACAATCAGACACGGAGGGTTCTACCTATGGGCACTGGGCTGTTTGTGATGGCCGTGTCTCAGTGGATGTTCTGTGCTGCAGTGCTGCTCCTCCTCGTCCAGTGGCTCCAGTGTTCTCCGACTCCCCCTGCCTGTCCTGAGTCCTGCCTTTGTCAGAGAGGTCCTCTGTTAAACTGTTCCTCTGCTGGCCTTTCCAAGGCCCCACAACACATCCCTTCCACCGTAAATGATCTAGACCTATCTCACAACCTTCTGAACTCCCTTGAACCCTCGTGGCCAAGTTGGGGGCTTAATAATCTATGGCTTGGACACAACAGCATCACTCAcctatctctgtgtgtggggaGGAACTGGAGAGGTAAACATGGGAGAATACCCCTCTCACACAACAGAGGAAGATGTGTATCCTGGGCCCCGGCCCTGCAGCTGCTGTCTGCTGAGAGGAACCAGCTAGAGATAATCCCTGaggGCCTGGGAGGCAGTGAGTTCCTGCAGGTGCTTCAGCTCTCCCACAACAGGATCTCTGGCCTGCAACCTGGAGATCTTTGCAGGTGCCCCCATCTGAGAGAGCTTTGCCTGCAGCACAACCACATCTCCAACATCCACCCACATGCCCTCAGGGACCTCCCAGAGCTCAAGGTCCTGGATCTGAGCTTCAACCTGTTGACCACAATCTCTCCATCCGCCTACCTGTCGCTACGTAACCTGAATGCcctggtggaggtgagtggtaaCAGGTGGAGGTGTGACTGCAGCCTGCGGAGCGTGAGGAGGTGGATGGCCTACGATAGGCAAAGGGCCCAACAGCAGATCTGGAGGGGGGTGGTGTgttcctccccctccacccacacAGGTAGAGACCTGCTACACTTGGAGGACAGTGACCTCACCTGCTCTACAGCGGAGAACAGGGAGGGGCTCCACCAGGATGTGACAGTGACTGAGGGGACAGAGATCCTGCTGCCCTGCGGCACCCTGCGGCAAGATTCAACATGGTGGACGACTAATGGACAAGTTTCTGGAAGTCAGATGGGCCTGCTGAtcagtgacatcacagaggaagaCGCAGGGCTGTACGTGTGCATGTCTGGGCCAGAAGAGCAGTATATATCTGTATTTAACATCCATGTTCATAAGGCACAGAGGAAAAGCAGAGGCACCAGGAGTTTACACTGGGAGAGGAAGCTGATAAACACACAGGTAGGCAGCCTACAGAGGGAGGGTCAGGGGACAGACCTGAACTCTCTAGATCTCTACAGGGCTTCTCAGAGAACACAGTCTGACCTGGTCctggctgtctgcctgtctgtattCATCACCTTCCTGTTAGCATTTATACTTGGTGCTCTTGCCAGACCTCTCCTGGACCCTCTCTGGAGGAGGTGCTGTAACCGTACCAAGCAAAGCTCCTCCCCAGCCCAGTCGGTCTCCTCTGGTGGGCAGGGGCCCTACGACAATGGCGCCTATTCAGATGAGGCGCAGGAGGAACTAGGAACACACAGGGAGAGTAGAGTGACATTCAGAGGACATCCTTCAGAAATAAGGGATCAGAGTAGCATTCCATACTATGATACGGTGGCCAATGGCAGACAGGACAACCTCGCTGGGGAATATGATGCAACATATGAGAATGTTTATGCAAAGGATATCTCACACCCCTCCCTTGAGGTCCATCACCCACCTGACGAGAAGCCCAGGGCACAGGACTCTGTCAGCTCAGGCAGCTCCCAACAGGACAGCCCAGAGCCAGACACCCATAGTGGAGAactctctgatgtctctctgagtGAACCACAAGTGGGTGCTCACCCAGTTCATACCCACCATGGCATGGAGTTTGAACCCATCCCTGACCCAGAACAGTTGCAGGGATATCGAAGCTCGTCCGTGTCTTCACACTCTGACCAGGAGAGGCTGGATAGGGATCAGGATATGCACTGGCCCAAAAACTATTTGGCTCAAAGATTGGAAGAGAAGTGCAAGACCCAGAACAATCCCTGGGAGCATCAATCCCCCCAGAAGGAAGATGACTCATTTGAGCAGAGTTCAGATTTCCCTATGGTTAAACAAGTTGATGTGCCACAGATCAAGATCGGCAGCGTGGGTGAGATCCCTGAATTTACAGCTGAGCCCTTTACGGATTGGAAACCAATCAAGGCAGATCCAAACCCCATGGAGCCTGAGCTGTGGAATGATAGTGGAGAGAGCTTTGAGTTCCCTGATTCTATCCGAGGTGCATCGGCACAGTCCAGCAGTCAAGATCTCTCGGGTTCTGCTTTTGACGATCAGTTGAGAAAGAAGTATGAACAAGCTCGGAATGAAGAACCACTGGTGAAAGACCAGAGGGAGAATAATAACCTGCTGGAGCTGAACTTAAGTTACAGTGGGAATGAACCTACAGTTTACACTGTGAACCCAGAGACGGAGGTAGTGAAGGAGAAGATGATTGTCCAGAATGTGGGTGAACTGATACAGGAAGTTCAGAGTGCTCTGAAAACACAGGAGTGCTATGATATGTCCAGTGATCGTGGGGATGAACCCACAAAGTACACAGTGAACGAGGACGATTCAGCTCAAGTTCCAGATGTCATGTACAGGGATCCATCTCTCAGTCTTGGCACCAAAGAGACAGTGTCTCCAAGGAAAACTCTCAATATTGGCTTTAAGAAATACACCAAGCCCCTTCCACAACTGTCTTTGCCAAAAacatccctccctttctccaccTCTTCAGACTCTCAAACTCAACTATTCTATGTCCCCCCACTTGGGAGACGTCTGGATAGCCATCCCCCTCAGGAAGCTCCACCTGCTGCCCCAAGAACACCCCCACCCTCTGGTTCATCCTCTTCTAGAACCGGGAGCGAGGATGAGACTACAATGAACCGAATAAGAAAAGAGAAAGCTAAGATCCCTGACGTCACATATAGGGATTACTCTCTCAGATCTGGAGACACATCAACTAAAGTATCTTTCTCTCCAAGAAAATATCTAAATATTGGCTTCTCCAGCGAGAGTTCTCAATATCAACATGAGTCTGTGACAAGGTACGAGAGTGTCACCAGAACAAAGGGTGTAGACTTTGATGAAGACAGCAAGCTTCGTCCCCAAATGTCTTTGCCCAAAACATCACTCCTTTCCACCACCTCCTCAGACAGGGTCAGAGCTGAAGAGCCATCAGTTAAAATCTACATCCCTGAATTTAGGAGACGTCAGAATATTCAGCCCCCTCAGGAAGCTCCACCTGCCAAATCATCCTCTTCCAGCTGTGAGAGTGGAGATGAGACTCCAAAACACACAATGAAACCAGCTAAAGCCATCACAGATTATTTTTCCCCAAGGAGAACACTCAATATCAGCTTTAACAACTCAGCCAGTACCACAGATGAGGTGGAGAGGAAGACCGAAGCAGAGGACAGGTGGGATCAGCCAAGGCTTGGTAAAGTGAAGgcgctgtcagagagaacacgaAGGGACACAGAGGAAAGTTCTACAGACATGAATGTTTCTTTCTCCCAAATAAGAGCACTCAATATCAACTTTGATGCCTTAGACAGCAGCACAGACGAGGTGGGGAGGAGTACCGGAGCAGACTACAGTAATCCTACTGAAGAAATCAGTCCCTCTCCCCAACTGTCATTGTACAAAACACAATTTTTCTCTACCCCCACAGATGAGGCGAGGCCTAGAGGAGAGTATTCACTCCAAATTCCCCTACACAGGAAGCGCTTAGTTGTAGACATCCAGCCCCCCCTGGCTCTACCGGATGCcccagcaacacctccaccatccccagagggagaggaggcagcaGGGTCTGGGTGGAGGAGTAGGGAACAACAGATGAGAGCCATGGATGGATTTGGCTGTAACTCCATGACACAGGGAGACAGGAGCTATATGGGGTTAGTGGTTGCTAAACCATTCGGCATATCTCGTCCATATCAGAGCGTTACCTCAGAAACCATTATGACCACCCGGTGTAGAGAGGTCTCTACCTCTGGTGACCTCAATATGACCTACTCCAACTCCACCCTCCATTTTGAAACACACAAAGAGGGCAGTGAAGCTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTgtttgtactgattaaagaaatCCCCTGAGAAGTTAATGAGTTGAGAGCTACAACTGTAATTGTTTGTACTGATTATAGAAATCCCCTGAGAAGTTAATGCAGCAGATGAAAGTTGTTAAAACGTAAGTTGTTTATTTTAATTACAGAATTATACTGTTATTACATTGTTGTAAATGAGTAACACCAGACATGTTTGTCTTAATGAAAATAGCTGTTTAAGTGACTGAATTATTTCAGACTGAGGCAAATAAAAGGTGGGACCATTAAAACCCAATTTCCCAGATTCATATCCACCTACTTTACTCACTCAGTACCCTACTCCCCTCTATTTTGCTACAAAATTGTCTTTATGACACTATCATAAATAAACCTGTAATGAAAGTCGCCCATATTGTGTTTGATGTTTTTATATAAGTTGATCTATGGGTACCTGGATAATAAGGTGCACACATGACGTAGCAATTACTGTGGTAATGCAATAGTAAAAATACATTAGGCCTACAGTAGCGGAATCAAACATGATCCTGTGCAATTTAAAAACACAGAACGAACATCTCATCACAAACCACATTTGAATCTTTCTGTAAAGGAAGATGGCAAAGCAAAAATGAATGACAACAGTAAGTTAATATAGagatactgtaggttacagtgaaaacacatactgtacatacatatacagtcAGGACAGGGTTGTTCAACTTCCTGCATTACCAATGTAGAACACCATCTGAATTAGACTTATTGGTGCGCAGTCCAGCCACTAGCTCCATCTCCAAAAACCTAATATAGATAAATATACTGATGACTGGACAGGACAGCCAAAGCATCATGGATCACTGATAGGTGGAGATCTCATGTGACCTTACTACTTCATAAATTGATCAATTTACTGTATATGCTTTAGTTGTGGATAAGATGCCACTGGGTTTGACCAATTCATGATTGACATGTCAAAAGATCTGACACCATTCTTACAACACAGTCTCATGTTAATTTCAGTTCATGTCCATTTGTTTGAGAGACTGACTTTGTTGTTTTTACTGTGTGTGATAGGGGGAGGGGTTGGCAAATGAAGGAGGGAACTCTTCTTCCTCAAATGAGGTTACATGTGTGTTTCAGCTCTGAATATACACAATCATGGTTTTCATAAAGCGTTAAGACAACATGGAGGATATCAAATGAAGCACAAATTCCtgtacaaaaaacaaaacaatttttcAAAAATCTCATCCATTCTGACGGAGAGCGTGCAACGTTTCACTCATGACAATTGAGCGCCACATCACAGCCAGAGAAAAGTTTATACATGTGTTACAAGAACATTAGCAAAAGCATAGCATCGTCACAGgggtctaactctaacccttcaaTGTCCAtggtctaactctaacccttcaaTGTCCAtggtctaactctaacccttcaaTGTCCATGGTCTGACTAACCCTTCAATGTCCAtggtctaactctaacccttcaaTGTCCGtggtctaactctaacccttcaaTGTCCGtggtctaactctaacccttcaaTGTCCAtggtctaactctaacccttcaaTGTCCATGGTCTGACTCTAACCCTTCAATGTCCATGGTCTAACTAACCCTTCAATGTCCATGGTCTAACTAACCCTTCAATGTCCATGGTCTGACTCTAACCCTTCAATGTCCATGGTCTAACTAACCCTTCAATGTCCAtggtctaactctaacccttcaaTGTCCAtggtctaactctaacccttcaaTGTCCAtggtctaactctaacccttcaaTGTCCAtggtctaactctaacccttcaaTGTCCATGGTCTAACTAACCCTTCAATGTCCAtggtctaactctaacccttcaa

Function

NR:

description
uncharacterized protein LOC110524549

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604321.2 True 8321 mRNA 0.44 5 73993983 74008569

Neighbor

gene id symbol gene type direction distance location
ociad2 ocad2 coding downstream 21853 73969591 ~ 73972130 (-)
fryl NA coding downstream 40106 73850914 ~ 73953877 (-)
LOC118964642 LOC106560258 coding downstream 146224 73844674 ~ 73847759 (-)
palld LOC106560254 coding downstream 206389 73691856 ~ 73787594 (-)
LOC110524534 LOC106560249 coding downstream 410884 73579899 ~ 73583099 (-)
sgcb LOC106560263 coding upstream 473 74009042 ~ 74016038 (-)
LOC110523002 LOC106560265 coding upstream 53659 74062228 ~ 74075591 (-)
LOC110524553 LOC106560266 coding upstream 113734 74122303 ~ 74354093 (-)
LOC110524556 LOC106560268 coding upstream 397277 74405846 ~ 74501105 (-)
LOC118964644 kdr coding upstream 798637 74807206 ~ 74820307 (-)
G437878 NA non-coding downstream 153797 73839901 ~ 73840186 (-)
G437873 NA non-coding downstream 161291 73832488 ~ 73832692 (-)
G437807 NA non-coding downstream 244919 73746879 ~ 73749064 (-)
G437771 NA non-coding downstream 308112 73685559 ~ 73685871 (-)
G437924 NA non-coding upstream 10402 74018971 ~ 74019172 (-)
G437926 NA non-coding upstream 12764 74021333 ~ 74021541 (-)
G437929 NA non-coding upstream 14862 74023431 ~ 74023643 (-)
G437933 NA non-coding upstream 23675 74032244 ~ 74032596 (-)
G437934 NA non-coding upstream 25734 74034303 ~ 74034613 (-)
LOC110524526 LOC106584218 other downstream 583644 73370439 ~ 73421683 (-)
G437079 NA other downstream 846855 73146358 ~ 73147128 (-)
G437074 NA other downstream 868945 73122112 ~ 73125038 (-)
G437054 NA other downstream 898647 73094794 ~ 73095336 (-)
G436873 NA other downstream 1218115 72774561 ~ 72775868 (-)
G439002 NA other upstream 856690 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 954891 74961377 ~ 74968484 (-)
G439594 NA other upstream 1254904 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 1562680 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 2577889 76586458 ~ 76590370 (-)

Expression


Co-expression Network