LOC110523002 (LOC106560265)


Basic Information

Item Value
gene id LOC110523002
gene name LOC106560265
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74062228 ~ 74075591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979058.1
ATAACTGTCAGAAATATCGCCTCCATTTGTAATATGGGCACCAATGCCTCTGCTCTAGAGAAAGACATTGGTCCGGAGCAGTTCCCAATCAACGAACACTACTTTGGATTGGTCAACTTTGGGAACACTTGTTACTGTAACTCGGTGCTTCAGGCCCTGTACTTCTGCCGGCCCTTCCGGGAGAACGTGCTGGCCTACAAGGCCCAGCAGAAGAAGGAGAACCTGCTCACGTGTCTGGCAGACCTCTTCCACAGCATCGCCACCCAGAAGAAAAAGGTGGGAGTCATCCCGCCCAAGAAGTTCATCTCACGCCTGCGCAAGGAGAATGACCTGTTTGATAACTACATGCAGCAGGACGCCCATGAGTTCCTCAACTACCTGCTGAACACAGTGGCAGACATCCTGCTGGAGGAGAAGAAGCTGAACACACAGGAGAAGCAGAACGGACGCCTCAAGAACAACGGAACGGCCATCACCACGAAGACCGAGCTCGAGAACAAGACCACGGAGCCCACCTGGGTGCATGCCATCTTCCAGGGCACGTTGACCAATGAGACGCGCTGCCTCAACTGTGAGTCCATCCGGGCCGTCAGCAGCAAATATGAGGACTTTCTGGATCTTTCTGTGGATGTAGAGCAGAATACATCAATAACAGACCTTCACTGTCTCTGGGACTTCAGTAACACAGAGACCTTGTGCAGTGAATACAAATACTACTGTGAGACATGCTGCAGCAAGCAGGAGGCCCAGAAAAGGATGCGTGTGAAGAAGCTGCCTATGATCCTGGCCCTGCACCTGAAGCGATTTAAGTACATGGAGCAGCTGCACCGATACACCAAACTGTCCTATCGTGTTGTCTTCCCTCTGGAGCTCCGCCTCTTCAACACCTCTGGAGACTCTGTCAACCTCGACTGCATGTACGACCTGGTCGCTGTGGTCGTCCACTGTGgcagTGGACCCAACAGAGGACACTACATCATAGTGAAGAGTCATGGCTTCTGGCTGTTGTTTGATGATGACATCGTGGAGAAAATCGATGCCCAGGCCATCAAAGAGTTCTATGGGTTGACGTCAGACATCTCCAAGAACTCAGAGTCTGGATACATCCTCTTCTATCAGTCCAGGGAGTAACTGGAATAAAcacccagccagagagagagaatgattggAACTCTGACCCTGACCCCTCTCTGAGTCATGTGCCAACGCCATTCCCCGTCTCACTGCCTTCCCTGGGTCTGCCTGGACTTCATTTCCCATAACCCCATGCTCTCCCTCCCTGCATTCAGCATGCTGGGAAGACTGTATAAACTGCCTTTTGTCCTTCAGCATCTGGACAGCACtttagaacaacaacaacaaaaaacaaacagtcACAACAACAAGGAGCAGGAAACATAAAGAAGCTACAACGGGCTGGTGTGTGATGCCCGTTTGTCTCCGCATGGGGCCAGGTCTGAAGACCTGAAGACCCACCATGGGTCACTCTTCCTGGGTCTGCCTGGCATACAGAGCTGGCTAGACTGGTACAGGTACAGACTGCTATGGGAAAGAAGATTGTAATATTTGTATATCTGTATAGTATGTCTATTTTCACGCAATGTCATAAGTTCATAAATACTTTTAGTAGGGTTATCCCGTGACCTTATATTTACAATGTCCAGCCCATAGATGTATTCTACCTGGGGATTGGCTAGAGCTGGGATGGAATGGAAGTTTTAGGGAGAGATATAAACTAGTTGAAAGAGGGTCTATGCATCTAGTGTCGCTGAACTGCATGTTTCGGTGTTCACTGTTTGAGCTGGTGTAGATTCAACTTGAGTTGTGACCAATCCAAACCTATTCATTGTAATGCTGAGATATGGTAGTTCTACAGAAGACCAGGATGCATGTAGCTCTCTGTCTGCTGCTCCCGTCCCCTAACATAGAGACTGGCCCAGGCCCCAATGCTCCTCTCCCAAGTTATAACCATGTTGTGATCCAGCCCCCACTCTAGAACATAGTCACTCACTGACACAAACTACATCTCTACTAGTCTCTAGACTAGTTTGGTTTCTGTCTAATCCCTGTTTTGTAAAACACTATTTATTGCTCTTATTTATGTCTAATGTTATAATGTTGACTGTGCTGGTAGGTGGAGGAGATTGTGCCTCAGGGCTTGACCCATCCAGACTCAATCTTGTCTTGTTTTGTATGTAACATCTCCCCCTCACTGAGTCTGGTaggtcagtgtttcccaactccggtcctcgagTACCACCCAATggtacacatttttgttgtatccCTGGACAAATATTCCTGATTGAACTCATTGAGgccttgatgattagttgaatcaggtgtgcttgtccgggGCTACAATTAAAATATGTacggttgggggtactggaggaccggagttgggaaacactggtgtaGGTAATATACATACAGCGCTCTATGGGGTTGACAACGTCTTTAGTAGCTTTACTTTGAAGTATGTGGATAGCTGGACCCTGTCGAAAGAACCACATAATCCACAGTTGTCAGGTATCATGAAAAGGAGTGTTTCTCACAGTGAGATTGGTGCAATAGGAGGTCAAGTGAGCTGATAAGATGCCGACTTCCCTTTGAAGAAAATATATATGTTGATATTAAATGTTAGTATGCTTTGCTACCAGCTAGTCTCCTCCCAGTCGgtagtgtgtatctgtgtgagaTGATCAAAGGAAGTGGAACTATTTTGCTAGGTGCGTTATGGGGCAGCGGTCAACATAATGTTGGTATGATGACAGAACGTACCTGTTTATTCTTCTTCCTATGTTGAAATATTGGTGTCTTTACATGTGTTCTTGTAACACCTTGTTATTTTGCatagttgcccccccccccccccc

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 46-like, partial

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979058.1 True 2879 mRNA 0.48 11 74062228 74075591

Neighbor

gene id symbol gene type direction distance location
sgcb LOC106560263 coding downstream 46190 74009042 ~ 74016038 (-)
LOC110524549 LOC106560259 coding downstream 53659 73993983 ~ 74008569 (-)
ociad2 ocad2 coding downstream 90098 73969591 ~ 73972130 (-)
fryl NA coding downstream 108351 73850914 ~ 73953877 (-)
LOC118964642 LOC106560258 coding downstream 214469 73844674 ~ 73847759 (-)
LOC110524553 LOC106560266 coding upstream 46712 74122303 ~ 74354093 (-)
LOC110524556 LOC106560268 coding upstream 330255 74405846 ~ 74501105 (-)
LOC118964644 kdr coding upstream 731615 74807206 ~ 74820307 (-)
LOC100135915 LOC106560272 coding upstream 773239 74848830 ~ 74891311 (-)
LOC110522887 LOC106560273 coding upstream 825966 74901557 ~ 74911349 (-)
G437945 NA non-coding downstream 2646 74055001 ~ 74059582 (-)
G437934 NA non-coding downstream 27615 74034303 ~ 74034613 (-)
G437933 NA non-coding downstream 29632 74032244 ~ 74032596 (-)
G437929 NA non-coding downstream 38585 74023431 ~ 74023643 (-)
G437926 NA non-coding downstream 40687 74021333 ~ 74021541 (-)
G437991 NA non-coding upstream 33852 74109443 ~ 74109667 (-)
G437992 NA non-coding upstream 34417 74110008 ~ 74110237 (-)
G438307 NA non-coding upstream 134207 74209798 ~ 74217446 (-)
G438409 NA non-coding upstream 365259 74440850 ~ 74445900 (-)
G438410 NA non-coding upstream 370512 74446103 ~ 74450669 (-)
LOC110524526 LOC106584218 other downstream 651889 73370439 ~ 73421683 (-)
G437079 NA other downstream 915100 73146358 ~ 73147128 (-)
G437074 NA other downstream 937190 73122112 ~ 73125038 (-)
G437054 NA other downstream 966892 73094794 ~ 73095336 (-)
G436873 NA other downstream 1286360 72774561 ~ 72775868 (-)
G439002 NA other upstream 789668 74865259 ~ 74927797 (-)
LOC110523004 NA other upstream 887869 74961377 ~ 74968484 (-)
G439594 NA other upstream 1187882 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 1495658 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 2510867 76586458 ~ 76590370 (-)

Expression


Co-expression Network