LOC110524555


Basic Information

Item Value
gene id LOC110524555
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74360777 ~ 74383682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978389.1
TATAAGGTCATGAACCACGCTTCAGCCACTAAACTCATGGTAAAACAGGTCCAGGAATGGGACCTTCCCTGCTTTAGATCTGACTACTCCTCCCCCAGCAACCACTACAAATCAGCCTTGTCCAGAAAGACAAGCGGCACCCCCAATGTTATTGGAGGACAAACTGGTACCATCAGCCAGGTAGAGGAACAGAGACGTCACAATATAGAAGGAAATAACATCcagGTGCTTTCCAAGCCATCTGACACTGAGCCTACTCCCACTAAGATGCCCCCTTCTTCCCTCCGCCTCCACCCTACAATGTCAACTCCGCCCCTCCACTCATTCCTCCACCACGTGTGTGTAATTCTCTCCAGGTGTATGGGTGCCAGTGCTGTCAGTCTGTCGGACTTCCTCCTCATCGCCTGATGAATATGAGGCAGAGGGCAGGAAGTCCCCCCTGGCCTGAGCTCACAGCTGAGCGCAGGCTGCCATCGCTTCATCTTCAAAGATTCCAAAATAGCACCCCTCACACACTCCCAGCACCCCCTAAGTTCAATGAGCCCGGTACCGACATGTTGTTCAACCTGTGCCAAATATCCTAATACAACCAAAATATCAAACATCCTGTCGACCCGGCAAACCTGGCTTTCCTTCTTTAAGTTACAGGCTCTGCCTCCTATTGTGATGCAAATGTTCAACGTGATAAAAATAGCTCctggaagaaaagaaaagtgcaGAGCCAGCagattggagggagagagagagagctttgttACTCTTGGTACAGTAGGGTCACATTAGTGGTGTAGTATTATTGCTTGATAGGGCCAGGTTTTAGCGTGGGGTtgtgttgtcattgcaggccagTCTGTGTAGTGAAGCACTAAGGGATGTTGTCTGGAGCTCTAGTGTAGAACTGGTTGTACTGATCAGTGTAGTTTGGCACATACATTGTGGTTAGTTTGACACCTGTACTGACTGATATGGCTGTGACGGTCTTGGAATTTGAGGTTACGGTAATTGGCCAGGCCAATGTACAGACACCAACATAATCGTTCAAGGAAATGCATATGCTTCCTAATAAAACCTATTTGAAACAAGCCATTACACTTCGTTATCATCATGGCGTTTCATTACTATTATTCAGGTTATTACTTTTAAATATGAATCAACAAATTAAGAAATGCCAGGTTGGGGAGGATCTGTGGGATTTTTGTATCGACACAACATCAGCGGAGTCAAAATAAAGATATTCCTACCTTGTCTGTTGGCTTTTCTGCATATAtacacaatcaatcaatcagtcaaatcaaatgtatttata
>XM_036978388.1
TATAAGGTCATGAACCACGCTTCAGCCACTAAACTCATGGTAAAACAGGTCCAGGAATGGGACCTTCCCTGCTTTAGATCTGACTACTCCTCCCCCAGCAACCACTACAAATCAGCCTTGTCCAGAAAGACAAGCGGCACCCCCAATGTTATTGGAGGACAAACTGGTACCATCAGCCAGGTAGAGGAACAGAGACGTCACAATATAGAAGGAAATAACATCcagGTGCTTTCCAAGCCATCTGACACTGAGCCTACTCCCACTAAGATGCCCCCTTCTTCCCTCCGCCTCCACCCTACAATGTCAACTCCGCCCCTCCACTCATTCCTCCACCACGGATCCCCATCAATGTTCCTCCAACTGGTAAGCATTTCTACTGTGATGGAAACAGATGTTGGCTCTAGTCTACACTGGATGTTGTGCATGGTAGATGTTGGcatggttgttgtctttgatgccTTGATGGCTTGATCCTGACATACTGAATGTTTTGTgaaaactcacacacacagttggtGACCAATAATACTTTCAAGTTACTATCGTGAGAAGAGGGAAATTGGAAATGTTTAATGCCTATGAGAAATTACGTTGATGCAATATTTAACAATATTGTGATGATTCTGGTCCAATGCGGTAGGCAATGTCATGATGTTGCCCTGTTGtatgaggtttatgacccccataaaaacctttcccccttttctctccactctacagattggactcttggaaagccctttgttaacatagagcGAGTATGGTAATATCAAAAGGTTGGGGAATGGTTcaatatttctgtaatccaaccagttgaaagtgtccgttggtacttaaagaatatgatgtcagatcagttggtgTCTGGGACATTATATCTGATGATCGGATGACGTACATTGTATCTTgaaaagtctacacattctaattcacatggaattgttgtgcaattgaaatgtttaaatatgaaactattcaatgtaattttagcttcgaaatgagagaattgttttcataAGTAAACTATACTCACTCAGTGGCCAcacccaagtgaacagacattggttgggaactatgaaacacgcccttctctcccCCAATTTCAACTACAACCTAACGAAATTAACATTTAGTTCCCAATGATGTGAGGACTGGTGTCCATACGTTTAAAAGGGCCAATTTCAATGTGGAGGTGATGATCACCCCGCTGGAAGGATTAATTTCGACTAGACCAGCCAGAATTCAGCGCGAGCTGATTATGGCAAAATGGtctgaactttgaactcttattcactaaataAGAAGTAATACATCCTAGAAGTCGAGTTATCAGCCACAGCTGTAAACGTACATGGCCTAGGAAAGGACAGACAATCTCCTAATAAGAAAGACAGGGTACAACGTATCCACCTTACAACACTACGATCAGACAGATTCTACAATGGACAAGGGCGATCTCTACTGGGCAAACCAGTCTTCCATCTTCAACCCGTctatcgaagcgcagctcagtgtaaatatatatcttgc
>XM_036978390.1
TATAAGGTCATGAACCACGCTTCAGCCACTAAACTCATGGTAAAACAGGTCCAGGAATGGGACCTTCCCTGCTTTAGATCTGACTACTCCTCCCCCAGCAACCACTACAAATCAGCCTTGTCCAGAAAGACAAGCGGCACCCCCAATGTTATTGGAGGACAAACTGGTACCATCAGCCAGGTAGAGGAACAGAGACGTCACAATATAGAAGGAAATAACATCcagGTGCTTTCCAAGCCATCTGACACTGAGCCTACTCCCACTAAGATGCCCCCTTCTTCCCTCCGCCTCCACCCTACAATGTCAACTCCGCCCCTCCACTCATTCCTCCACCACGGATCCCCATCAATGTTCCTCCAACTGattggactcttggaaagccctttgttaacatagagcGAGTATGGTAATATCAAAAGGTTGGGGAATGGTTcaatatttctgtaatccaaccagttgaaagtgtccgttggtacttaaagaatatgatgtcagatcagttggtgTCTGGGACATTATATCTGATGATCGGATGACGTACATTGTATCTTgaaaagtctacacattctaattcacatggaattgttgtgcaattgaaatgtttaaatatgaaactattcaatgtaattttagcttcgaaatgagagaattgttttcataAGTAAACTATACTCACTCAGTGGCCAcacccaagtgaacagacattggttgggaactatgaaacacgcccttctctcccCCAATTTCAACTACAACCTAACGAAATTAACATTTAGTTCCCAATGATGTGAGGACTGGTGTCCATACGTTTAAAAGGGCCAATTTCAATGTGGAGGTGATGATCACCCCGCTGGAAGGATTAATTTCGACTAGACCAGCCAGAATTCAGCGCGAGCTGATTATGGCAAAATGGtctgaactttgaactcttattcactaaataAGAAGTAATACATCCTAGAAGTCGAGTTATCAGCCACAGCTGTAAACGTACATGGCCTAGGAAAGGACAGACAATCTCCTAATAAGAAAGACAGGGTACAACGTATCCACCTTACAACACTACGATCAGACAGATTCTACAATGGACAAGGGCGATCTCTACTGGGCAAACCAGTCTTCCATCTTCAACCCGTctatcgaagcgcagctcagtgtaaatatatatcttgc

Function

NR:

description
pre-mRNA 3'-end-processing factor FIP1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978389.1 False 1306 mRNA 0.46 5 74360777 74367558
XM_036978388.1 False 1530 mRNA 0.43 5 74360777 74383682
XM_036978390.1 True 1173 mRNA 0.43 6 74360777 74383682

Neighbor

gene id symbol gene type direction distance location
LOC118964643 NA coding upstream 3805 74354175 ~ 74356972 (+)
LOC110524554 LOC106560267 coding upstream 239032 74119478 ~ 74121745 (+)
LOC110523001 spata18 coding upstream 337431 74017374 ~ 74023346 (+)
LOC110524552 LOC106584107 coding upstream 365039 73974430 ~ 73995738 (+)
ociad1 LOC106560260 coding upstream 391896 73955666 ~ 73968881 (+)
LOC110524557 LOC106560354 coding downstream 239369 74623051 ~ 74624589 (+)
LOC110522886 pdx1 coding downstream 244745 74628427 ~ 74630673 (+)
LOC110523003 LOC106560269 coding downstream 254464 74638146 ~ 74662449 (+)
LOC110524560 LOC106560270 coding downstream 345667 74729349 ~ 74770168 (+)
LOC110524561 LOC106560271 coding downstream 451766 74835448 ~ 74841452 (+)
G438064 NA non-coding upstream 154448 74204238 ~ 74206329 (+)
G437996 NA non-coding upstream 248002 74112384 ~ 74112775 (+)
G437638 NA non-coding upstream 274031 74086544 ~ 74086746 (+)
G437631 NA non-coding upstream 285080 74075388 ~ 74075697 (+)
G437626 NA non-coding upstream 289539 74071037 ~ 74071238 (+)
G438230 NA non-coding downstream 109282 74492964 ~ 74495183 (+)
G438445 NA non-coding downstream 130919 74514601 ~ 74514830 (+)
G438446 NA non-coding downstream 132574 74516256 ~ 74516475 (+)
G438451 NA non-coding downstream 136423 74520105 ~ 74520340 (+)
G438453 NA non-coding downstream 137395 74521077 ~ 74521488 (+)
G437327 NA other upstream 865693 73456301 ~ 73495084 (+)
G436588 NA other upstream 1365042 72995499 ~ 72995735 (+)
G436403 NA other upstream 1856342 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 2673608 71552653 ~ 71687963 (+)
G434829 NA other upstream 3061877 71298615 ~ 71298900 (+)
G438719 NA other downstream 388327 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 787622 75161317 ~ 75178287 (+)
G441903 NA other downstream 2884530 77268212 ~ 77268766 (+)
G442273 NA other downstream 3174648 77558330 ~ 77583227 (+)

Expression


Co-expression Network