Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524557 |
| gene name | LOC106560354 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 74623051 ~ 74624589 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| GS homeobox 2-like |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09310 | GSH; homeobox protein GSH |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021604333.2 | True | 1226 | mRNA | 0.46 | 2 | 74623051 | 74624589 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110524555 | NA | coding | upstream | 239369 | 74360777 ~ 74383682 (+) |
| LOC118964643 | NA | coding | upstream | 266079 | 74354175 ~ 74356972 (+) |
| LOC110524554 | LOC106560267 | coding | upstream | 501306 | 74119478 ~ 74121745 (+) |
| LOC110523001 | spata18 | coding | upstream | 599705 | 74017374 ~ 74023346 (+) |
| LOC110524552 | LOC106584107 | coding | upstream | 627313 | 73974430 ~ 73995738 (+) |
| LOC110522886 | pdx1 | coding | downstream | 3838 | 74628427 ~ 74630673 (+) |
| LOC110523003 | LOC106560269 | coding | downstream | 13557 | 74638146 ~ 74662449 (+) |
| LOC110524560 | LOC106560270 | coding | downstream | 104760 | 74729349 ~ 74770168 (+) |
| LOC110524561 | LOC106560271 | coding | downstream | 210859 | 74835448 ~ 74841452 (+) |
| LOC110524562 | exoc1 | coding | downstream | 307561 | 74932150 ~ 74946070 (+) |
| G438582 | NA | non-coding | upstream | 1959 | 74620880 ~ 74621092 (+) |
| G438572 | NA | non-coding | upstream | 10231 | 74612454 ~ 74612820 (+) |
| G438567 | NA | non-coding | upstream | 12090 | 74610628 ~ 74610961 (+) |
| G438552 | NA | non-coding | upstream | 25581 | 74597129 ~ 74597470 (+) |
| G438454 | NA | non-coding | upstream | 101108 | 74521735 ~ 74521943 (+) |
| G438596 | NA | non-coding | downstream | 6897 | 74631486 ~ 74631716 (+) |
| G438599 | NA | non-coding | downstream | 11039 | 74635628 ~ 74635929 (+) |
| G438595 | NA | non-coding | downstream | 37931 | 74662520 ~ 74663628 (+) |
| G438623 | NA | non-coding | downstream | 67134 | 74691723 ~ 74692008 (+) |
| G438628 | NA | non-coding | downstream | 74233 | 74698822 ~ 74699097 (+) |
| G437327 | NA | other | upstream | 1127967 | 73456301 ~ 73495084 (+) |
| G436588 | NA | other | upstream | 1627316 | 72995499 ~ 72995735 (+) |
| G436403 | NA | other | upstream | 2118616 | 72503460 ~ 72504435 (+) |
| ralgps2 | LOC106613957 | other | upstream | 2935882 | 71552653 ~ 71687963 (+) |
| G434829 | NA | other | upstream | 3324151 | 71298615 ~ 71298900 (+) |
| G438719 | NA | other | downstream | 147420 | 74772009 ~ 74776469 (+) |
| LOC110524571 | LOC106560285 | other | downstream | 546715 | 75161317 ~ 75178287 (+) |
| G441903 | NA | other | downstream | 2643623 | 77268212 ~ 77268766 (+) |
| G442273 | NA | other | downstream | 2933741 | 77558330 ~ 77583227 (+) |
