LOC110522886 (pdx1)


Basic Information

Item Value
gene id LOC110522886
gene name pdx1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74628427 ~ 74630673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601335.2
AGTCACGTGACTAGGGATAGGTATTCACTCATAGGTGCACTCCAAGTTGTGGCCTCACTTGAAGGATATATTGCAGGGACGTACATGGACATCCTGTAAAAATTATCGCTGGGAAAATCTGCTCAATAATGGATACCTCGGATATTTACTATGACGGTGAGCGCTTCCAACAGCAGTCACCGGAAGAGTATGACTATAACCCGCCCTCCTGCCGCTACAGCGGTGACACCGAGCAGGTACGGATCCCCATGCCCCCTTGTGCCTCTGTCGAGCACCGGAGCAAGGGAACTTTACTGCCCTACGATCTACCTCCCTGTCAGTACTCGAGGCCTGTTCAGACACAGACCCAGGAACAGGAATACCTGACAGGTCAGGGTCGTGTACCGAACGACTACCATCTAGGAGACAGCCTAGTGGTGGAGGTAGAGTCCCCGGCACAAGTGCCATTCCCCTGGATGAGGAGCTCCAGAGTTCACTCATACCAATCACTCCCAGGTGGTTATTCCCAGAACGGGGACGAATACAAGCGGAGCCGCACCGCGTATAGCCGGGCTCAGTTATTGGAGCTGGAGAAGGAGTTCCTCTTTAACAAGTATATATCCAGGCCCCGCAGATATGAACTAGCCACCACActtaaactgacagagagacacatCAAAATCTGGTTCCAGAACCGGCGGATGAAGTGGAAAAAAGAAGAAACGAAAAAACGAAGCCCCTCTGACCACCATGAACCGGAGTCTTCCAATAAGGATTGATAACACGTTAGGATAGCAGCATATGACCCTGGGTTTGACATCCAGATTATTTGTTGCACTTGTCTATAAAATGATAGGCCTATATGTGCTTAAACTTTATAGCCTACGTTAGGCCTATGATGTGGCTATAGGGACATTTTACAATTTGAATTTGAGAGCTATTCAATTCTTTGTCTTGTGCGTATATATAATGTTGCTAAATTTGCGAGTAATTCATTTATTTGTCATGTTCATAAACTAACATTTTGTTAAAAATTGCTCAATTTTAAATGACTGAAAATATCTGGAATTTTAATTAAAATGGATAAGAGTATCCATTTACTTCAGAATGTATTGTCTAATTTATTTTAGATACACAATAGTTGCCATTGTTAACAGCCCACTGGAAATGATTTACCTGTTCTCTGCGTTTTAAACGCATGTTAGGATAACAGAGCATACATTCATTAATTGGAGGCCTACACGCAGACTATGTATCAATGAATGACCGTGTTGAATGACTGAAAATATACCAATACGCTAGAACTAGCCAATAATATGATTAAGACATGTCTTACCTTTAGCCTACTTAATATGCAGATTAATTAACAATGCTTATAATTTTCCTCCTTGTTCCACATATAGCCTGTGTGATAGGCTATAACTAACACAAGAGGCATTTTGCCAGCAGAATGGTTGGTCTCATAAGTCTAAAAGGCACCTGCAAAGGGTTTATCTTATGGGCGTCACGACCCGTAATTTGTGGACAAATGATTTATGAGTGGTTAAGATATGATTTCGCTTTACAATTGCAGGCCAACGTTTACAAAACTTTAAGATAACAAAATACCTTTTGAAAATGAGGAACAATGCAAATGGCAACATGTTCTCTTTCAGTTGGTTACCTAACTCAGAGAAAGTAAAAATAAGAAAAAGGGATGATGGCAAATACCCAGAACTAGAATGACTTTTGCCCCCCAGGTTTGAGCAAACAATTAAGTCACTGTGTCATTTCCGCTGGTCGTGCAAATGCAGGTCGCCCGCCCAGCAACACCCATCAACAGACATCAACACAACTGAGCCAGGTGAAGTTAAACCTATAAATTCATATCAGTTATTCAGATCTCTACAGGTTGTGTTCTCTGTCATCTGGGCGAAACTTTTAAGCCAAAGAAAGATGTATACACGATATATTTTCATGTTGTTAGAATACTAAGATAAGGACATTTGTGTTTGCATGGGCTGCAGCCTTTGCTCACTGCGAAACAAATATATACTTaat

Function

symbol description
pdx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within determination of left/right symmetry; endocrine pancreas development; and glucose homeostasis. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; endoderm; intestinal rod; liver primordium; and somite. Used to study diabetes mellitus and diabetic retinopathy. Human ortholog(s) of this gene implicated in cerebral infarction; hyperglycemia; maturity-onset diabetes of the young type 4; pancreatic agenesis; and type 2 diabetes mellitus. Orthologous to human PDX1 (pancreatic and duodenal homeobox 1).

NR:

description
pancreas/duodenum homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601335.2 True 2019 mRNA 0.42 2 74628427 74630673

Neighbor

gene id symbol gene type direction distance location
LOC110524557 LOC106560354 coding upstream 3838 74623051 ~ 74624589 (+)
LOC110524555 NA coding upstream 244745 74360777 ~ 74383682 (+)
LOC118964643 NA coding upstream 271455 74354175 ~ 74356972 (+)
LOC110524554 LOC106560267 coding upstream 506682 74119478 ~ 74121745 (+)
LOC110523001 spata18 coding upstream 605081 74017374 ~ 74023346 (+)
LOC110523003 LOC106560269 coding downstream 7473 74638146 ~ 74662449 (+)
LOC110524560 LOC106560270 coding downstream 98676 74729349 ~ 74770168 (+)
LOC110524561 LOC106560271 coding downstream 204775 74835448 ~ 74841452 (+)
LOC110524562 exoc1 coding downstream 301477 74932150 ~ 74946070 (+)
LOC110523005 LOC106560277 coding downstream 341390 74972063 ~ 75017851 (+)
G438582 NA non-coding upstream 7335 74620880 ~ 74621092 (+)
G438572 NA non-coding upstream 15607 74612454 ~ 74612820 (+)
G438567 NA non-coding upstream 17466 74610628 ~ 74610961 (+)
G438552 NA non-coding upstream 30957 74597129 ~ 74597470 (+)
G438454 NA non-coding upstream 106484 74521735 ~ 74521943 (+)
G438596 NA non-coding downstream 813 74631486 ~ 74631716 (+)
G438599 NA non-coding downstream 4955 74635628 ~ 74635929 (+)
G438595 NA non-coding downstream 31847 74662520 ~ 74663628 (+)
G438623 NA non-coding downstream 61050 74691723 ~ 74692008 (+)
G438628 NA non-coding downstream 68149 74698822 ~ 74699097 (+)
G437327 NA other upstream 1133343 73456301 ~ 73495084 (+)
G436588 NA other upstream 1632692 72995499 ~ 72995735 (+)
G436403 NA other upstream 2123992 72503460 ~ 72504435 (+)
ralgps2 LOC106613957 other upstream 2941258 71552653 ~ 71687963 (+)
G434829 NA other upstream 3329527 71298615 ~ 71298900 (+)
G438719 NA other downstream 141336 74772009 ~ 74776469 (+)
LOC110524571 LOC106560285 other downstream 540631 75161317 ~ 75178287 (+)
G441903 NA other downstream 2637539 77268212 ~ 77268766 (+)
G442273 NA other downstream 2927657 77558330 ~ 77583227 (+)

Expression


Co-expression Network