LOC110524561 (LOC106560271)


Basic Information

Item Value
gene id LOC110524561
gene name LOC106560271
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74835448 ~ 74841452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604337.2
TCACATAAGTGGTTTGTGTACTTGTCTTTCAGGTAACAACTTCACATACCGTATGAGTTCGATCAGTCAGTGAGGGACAGATTGCCTGTACTAGCTAGCTATGTAGTTAGGCCATTTACAGCTAATTATACCGAGTAATTCATGCAGTCAGGGGGCAGTCATTTTTATAATTTAACACATAGCTACGCTACTACAAATTGCCCGTATTATCAGCATTTTAACACAATCTGCACGCTTCGCTGAAATGCTTCTCCTGGCCGGCGTAAGGGATGGAAGGGCTAACAGAAGTGTGATATGCGTCCTGCTGCCCATGGCTGTCGCGGTGTTGCTGTCGGTCGGAGTTGCTGGGATCCAGGAGGAAAATAAACATGTCCAAGAACAAACGCCACAAGAGAAAGCACCTACTGCTCATGCCATTGGTCCCGAGGTCAGTGGAAATGACTCCAGCAAATCTGAGAACCTGGGCTTCATCCATGCCTTTGTAGCTGCCATCTCTGTCATCATTGTCTCTGAGCTGGGAGATAAGACGTTCTTCATCGCGGCCATCATGGCAATGCGCTACAACCGCCTGACTGTGCTGTTGGGGGCAATGCTAGCTCTTGGCTTTATGACCTGCATCTCGGTGATGTTTGGCTATGCCACCACCATCATCCCCAGGATCTACACATACTACGTGTCTACGGCTCTGTTCGCCATCTTTGGTGTGCGCATGCTGAGAGAGGGGCTGAAGATGAGTCCAGACGAGGGtcaggaggagctggaggaggtgcAGGCTGATATTAAAAAGAAGGATGAGGagCTGCAGATGTCTAAGCTGCTAAATGGGGCTGCAGATGTGGAGTCGGGCTCAGGATCAAGCCATCCTCAGAGGAAGTGGCACAGCTTCATCTCGCCTGTGTTCATCCAGGCCTTTACCCTCACCTTCCTGGCAGAGTGGGGAGACCGCTCTCAGCTCACCACCATCATCCTGGGTGCCCAGGAGGATCCTTTTGGAGTGGCGGTGGGTGGTACTCTGGGGCACTGTCTGTGCACAGGACTGGCTGTGGTTGGAGGAAGGATGATTGCACAGAAGATTTCTGTCAGAACTGttACAATCATTGGTGGGATCATGTTCCTGGCCTTTGCCTTCTCTGCCCTCTTCATCAAACCGGATGCTGGATTCTAATTGGAGGGAAGACTTTCAGGCAAATTTTGTACATATCTGTAAAGCTCAACTATGtttatttagtgtgtgtgtggttgagagggAGAAATATGGAGAATATTCTCTAATGGGACTGAGCGAGTGTGTGTGATTTCTGTTCTCTTGTCTTACTAAGTCTGTGATCCCTCACCAGTCTGAGTCCTGTGGCCTACACTAAGAACAAGACTTACCTCTCCCTCACACTCAGGCCCGTCAGTACTGAGCTTGGGTCTGTTTATTCATTAATTCCCCATCCTTATTATTATATTATGCTTTAAAGTCCTACTCCAATCTAattttcacctcatttaacacctgatttatGTAACGGGGGGCGctttcctcttttgttctctattgcACCAGTATTGTTCCTCAAGCAAGCCGGGAAGTCAATGACATCATAGGGCACCATCAGACAAACTCATCAAAAGCCCTACTCCTTGAAGTTTGCAAAAAAAACACCTGTGGCAAAAAAAcatcttcttttttttacccttgtgtactttaatgtatttatacttgggatattgCTTTTCAATAGGaaaagtacaacaacaaaaaatatgccGGCTGAACACTGACTCCAGGTCTGTCCCATGGAGTCCAGTGTTATGGCCACTGTGAAGCGATTCAGTCCCTTTGATCTATGGCCAGGCCTCAGGCCAACTCCCATAAGTTTTGTTCCCCTCAGAATATCATCTGAGAACAGTAACATTGGGCTGCCTTTGCTTCATAAACCCCATAATTAGTTGATCTACCATTTCTCCAGCTGTATCAGGGATGTGAATCTTTTCACGGTTGTGAGTATTACTGTTTTCCATCTGCTAGACAGGACATGCCAGTTCTAAGCATCATGGGGATCTTGAAGCAGCAGTAACCCATTCAGTGTCAGTATTCTACATTCCAGCTTCAAGGCAGCAAAGGGGGGAAAACACTCCACGGCCAGTGTGTCCCAATGGAGGCTGTggggggagctataggaggatgggctcaatGTCTGGAATAGAACCGTATCAAACcctgtttgactccgttccattaattctattccagccattacaatgagcgcttcctcctatagctcccccaTCAGCCTCTGGTCTGTCTGCCACTCATATTGCTACTAGGGTTTATTAAGAGGTTGTGTCTGATGCCTACTGGCGACGAAATCATGGAACAAAATATTTCTTTGCTTCCTCCTAAATTTCACTGCCGATAAAAAGGACCTAAGCCACTAAGTCTACTGCACCTGTCCTGAGTGGTTGGTTATGGTAGTTATTTACAACTTTGAGGCACAGATGAGGATTTTGTTCTTGTTAAggtttgtattttttttgaagGTACTGTAGAgaataatcttttttttttttttttaagtgcacAGGGTAATGTGACTCCATTGTCAATATTTGACCAGTTGTACCCTGTGACGACCAAACAGGCGTGTACATGTACGTGGTTTGAGACAGATGAACTTTTGATTGTTGTAAATCCTGATCAATGCTTAAATGCTCAATAAAACCTGTCTTGCTTAGACTCTCTTA

Function

NR:

description
transmembrane protein 165-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604337.2 True 2730 mRNA 0.46 6 74835448 74841452

Neighbor

gene id symbol gene type direction distance location
LOC110524560 LOC106560270 coding upstream 65280 74729349 ~ 74770168 (+)
LOC110523003 LOC106560269 coding upstream 172999 74638146 ~ 74662449 (+)
LOC110522886 pdx1 coding upstream 204775 74628427 ~ 74630673 (+)
LOC110524557 LOC106560354 coding upstream 210859 74623051 ~ 74624589 (+)
LOC110524555 NA coding upstream 451766 74360777 ~ 74383682 (+)
LOC110524562 exoc1 coding downstream 90698 74932150 ~ 74946070 (+)
LOC110523005 LOC106560277 coding downstream 130611 74972063 ~ 75017851 (+)
LOC110524564 LOC106560280 coding downstream 190337 75031789 ~ 75041377 (+)
LOC118964645 LOC106583873 coding downstream 219729 75061181 ~ 75068745 (+)
LOC110524571 LOC106560285 coding downstream 319865 75161317 ~ 75178287 (+)
G438628 NA non-coding upstream 136351 74698822 ~ 74699097 (+)
G438623 NA non-coding upstream 143440 74691723 ~ 74692008 (+)
G438595 NA non-coding upstream 171820 74662520 ~ 74663628 (+)
G438599 NA non-coding upstream 199519 74635628 ~ 74635929 (+)
G438596 NA non-coding upstream 203732 74631486 ~ 74631716 (+)
G438807 NA non-coding downstream 59701 74901153 ~ 74902477 (+)
G438831 NA non-coding downstream 86601 74928053 ~ 74928567 (+)
G438836 NA non-coding downstream 108836 74950288 ~ 74950686 (+)
G438841 NA non-coding downstream 123916 74965368 ~ 74965605 (+)
G438904 NA non-coding downstream 255515 75096967 ~ 75099072 (+)
G438719 NA other upstream 58979 74772009 ~ 74776469 (+)
G437327 NA other upstream 1340364 73456301 ~ 73495084 (+)
G436588 NA other upstream 1839713 72995499 ~ 72995735 (+)
G436403 NA other upstream 2331013 72503460 ~ 72504435 (+)
G441903 NA other downstream 2426760 77268212 ~ 77268766 (+)
G442273 NA other downstream 2716878 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 3404387 78245839 ~ 78288092 (+)
G445204 NA other downstream 5375026 80216478 ~ 80217090 (+)

Expression


Co-expression Network