LOC110522887 (LOC106560273)


Basic Information

Item Value
gene id LOC110522887
gene name LOC106560273
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74901557 ~ 74911349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978400.1
ATTAATGACGCAGTGTAGTGTCATTGATGTAGAGAGGGGGTGACCTCGTGCTTTAAAATTGTTCCCGTGAAATATTATAAATCACAGATCGGCTAGAACATAAACCAAGAGCAACCAGAGAACGGTAATGATGAAGACCTCTCAGTGCCAaaccagagtctctcagagcggcAGCGCGAGCTACGTGAGCGTTCTCAGCACCAGCGCAATGAACACGCTCAGCAGCACGAGCCTCACGCTTCttgttctcctcctctcagcgATCCCAGTCTGCAAAAGTGTTCCAATACAAGAGCAGAGAGCAAATATATACCAGGACCAGCTTCTCAACCAGCTTGAAGATGTGTGCTCATCCTACTTTTCTGCAGACCTGCCATTTCGGGACATGAAAGTGCGGGACAATCCTAGTAAAAGGTCCCCTGTGATGCATCCTCTCCTGCAGCTAGTTCCTCAACTCAATACcagacgagagagaggagaggagtttgtGGTCCGCGATGATCTCCAAGGACCTGAGGGAATTCAGAGCAGAGGATACTTCTTATATCGGCCAAGAAATGGAAGAAGATCCCTAGAATTTGATTAAATATAAGGTATGGGGTATTGAACTGAACAGCCACAACCTTCATAGAGTGGTCCAGACCTCTGCCACAACCCCTTAATGATCATTGTACAGTGATGTTGAATGTACACAATGAAATTAAAGAATCCAAATAAAATTGTCTTTGTTGGTCCAAAAGTCTTATTTGTGTTACGAGGTGTCTTGAATTAAAAGC
>XM_021601337.2
TGACGCAGTGTAGTGTCATTGATGTAGAGAGGGGGTGACCTCGTGCTTTAAAATTGTTCCCGTGAAATATTATAAATCACAGATCGGCTAGAACATAAACCAAGAGCAACCAGAGAACGGTAATGATGAAGACCTCTCAGTGCCAaaccagagtctctcagagcggcAGCGCGAGCTACGTGAGCGTTCTCAGCACCAGCGCAATGAACACGCTCAGCAGCACGAGCCTCACGCTTCttgttctcctcctctcagcgATCCCAGTCTGCAAAAGTGTTCCAATACAAGAGCAGAGAGCAAATATATACCAGGACCAGCTTCTCAACCAGCTTGAAGATGTGTGCTCATCCTACTTTTCTGCAGACCTGCCATTTCGGACACCTGATGTTTTGGGAGAACTCTGTGTGTTAATCCTTGTACAGAAGTCTAAGGACATGAAAGTGCGGGACAATCCTAGTAAAAGGTCCCCTGTGATGCATCCTCTCCTGCAGCTAGTTCCTCAACTCAATACcagacgagagagaggagaggagtttgtGGTCCGCGATGATCTCCAAGGACCTGAGGGAATTCAGAGCAGAGGATACTTCTTATATCGGCCAAGAAATGGAAGAAGATCCCTAGAATTTGATTAAATATAAGGTATGGGGTATTGAACTGAACAGCCACAACCTTCATAGAGTGGTCCAGACCTCTGCCACAACCCCTTAATGATCATTGTACAGTGATGTTGAATGTACACAATGAAATTAAAGAATCCAAATAAAATTGTCTTTGTTGGTCCAAAAGTCTTATTTGTGTTACGAGGTGTCTTGAATTAAAA
>XM_036978399.1
ATGACGCAGTGTAGTGTCATTGATGTAGAGAGGGGGTGACCTCGTGCTTTAAAATTGTTCCCGTGAAATATTATAAATCACAGATCGGCTAGAACATAAACCAAGAGCAACCAGAGAACGGTAATGATGAAGACCTCTCAGTGCCAaaccagagtctctcagagcggcAGCGCGAGCTACGTGAGCGTTCTCAGCACCAGCGCAATGAACACGCTCAGCAGCACGAGCCTCACGCTTCttgttctcctcctctcagcgATCCCAGTCTGCAAAAGTGTTCCAATACAAGAGCAGAGAGCAAATATATACCAGGACCAGCTTCTCAACCAGCTTGAAGATGTGTGCTCATCCTACTTTTCTGCAGACCTGCCATTTCGGGACATGAAAGTGCGGGACAATCCTAGTAAAAGGTTTTTATTTCATTATGCTAAGCAACAAGGTGCTGGCCTAACAGAGGGGGCGTCCCCTGTGATGCATCCTCTCCTGCAGCTAGTTCCTCAACTCAATACcagacgagagagaggagaggagtttgtGGTCCGCGATGATCTCCAAGGACCTGAGGGAATTCAGAGCAGAGGATACTTCTTATATCGGCCAAGAAATGGAAGAAGATCCCTAGAATTTGATTAAATATAAGGTATGGGGTATTGAACTGAACAGCCACAACCTTCATAGAGTGGTCCAGACCTCTGCCACAACCCCTTAATGATCATTGTACAGTGATGTTGAATGTACACAATGAAATTAAAGAATCCAAATAAAATTGTCTTTGTTGGTCCAAAAGTCTTATTTGTGTTACGAGGTGTCTTGAATTAAAA
>XR_005051860.1
caccaatcggtgAGCCCTACGTGCTAatgtccaacctcaaaacataaatggaaaaacctaAACCTGTAACAGTACTTACTGCATTGGTGTTCCAATACAAGAGCAGAGAGCAAATATATACCAGGACCAGCTTCTCAACCAGCTTGAAGATGTGTGCTCATCCTACTTTTCTGCAGACCTGCCATTTCGGACACCTGATGTTTTGGGAGAACTCTGTGTGTTAATCCTTGTACAGAAGTCTAAGGACATGAAAGTGCGGGACAATCCTAGTAAAAGGTTTTTATTTCATTATGCTAAGCAACAAGGTGCTGGCCTAACAGAGGGGGCGTCCCCTGTGATGCATCCTCTCCTGCAGCTAGTTCCTCAACTCAATACcagacgagagagaggagaggagtttgtGGTCCGCGATGATCTCCAAGGACCTGAGGGAATTCAGAGCAGAGGATACTTCTTATATCGGCCAAGAAATGGAAGAAGATCCCTAGAATTTGATTAAATATAAGGTATGGGGTATTGAACTGAACAGCCACAACCTTCATAGAGTGGTCCAGACCTCTGCCACAACCCCTTAATGATCATTGTACAGTGATGTTGAATGTACACAATGAAATTAAAGAATCCAAATAAAATTGTCTTTGTTGGTCCAAAAGTCTTATTTGTGTTACGAGGTGTCTTGAATTAAA
>XM_021601336.2
CAGTGTAGTGTCATTGATGTAGAGAGGGGGTGACCTCGTGCTTTAAAATTGTTCCCGTGAAATATTATAAATCACAGATCGGCTAGAACATAAACCAAGAGCAACCAGAGAACGGTAATGATGAAGACCTCTCAGTGCCAaaccagagtctctcagagcggcAGCGCGAGCTACGTGAGCGTTCTCAGCACCAGCGCAATGAACACGCTCAGCAGCACGAGCCTCACGCTTCttgttctcctcctctcagcgATCCCAGTCTGCAAAAGTGTTCCAATACAAGAGCAGAGAGCAAATATATACCAGGACCAGCTTCTCAACCAGCTTGAAGATGTGTGCTCATCCTACTTTTCTGCAGACCTGCCATTTCGGACACCTGATGTTTTGGGAGAACTCTGTGTGTTAATCCTTGTACAGAAGTCTAAGGACATGAAAGTGCGGGACAATCCTAGTAAAAGGTTTTTATTTCATTATGCTAAGCAACAAGGTGCTGGCCTAACAGAGGGGGCGTCCCCTGTGATGCATCCTCTCCTGCAGCTAGTTCCTCAACTCAATACcagacgagagagaggagaggagtttgtGGTCCGCGATGATCTCCAAGGACCTGAGGGAATTCAGAGCAGAGGATACTTCTTATATCGGCCAAGAAATGGAAGAAGATCCCTAGAATTTGATTAAATATAAGGTATGGGGTATTGAACTGAACAGCCACAACCTTCATAGAGTGGTCCAGACCTCTGCCACAACCCCTTAATGATCATTGTACAGTGATGTTGAATGTACACAATGAAATTAAAGAATCCAAATAAAATTGTCTTTGTTGGTCCAAAAGTCTTATTTGTGTTACGAGGTGTCTTGAATT
>XM_021601338.2
ACGCAGTGTAGTGTCATTGATGTAGAGAGGGGGTGACCTCGTGCTTTAAAATTGTTCCCGTGAAATATTATAAATCACAGATCGGCTAGAACATAAACCAAGAGCAACCAGAGAACGGTAATGATGAAGACCTCTCAGTGCCAaaccagagtctctcagagcggcAGCGCGAGCTACGTGAGCGTTCTCAGCACCAGCGCAATGAACACGCTCAGCAGCACGAGCCTCACGCTTCttgttctcctcctctcagcgATCCCAGTCTGCAAAAGTGTTCCAATACAAGAGCAGAGAGCAAATATATACCAGGACCAGCTTCTCAACCAGCTTGAAGATGTGTGCTCATCCTACTTTTCTGCAGACCTGCCATTTCGGACACCTGATGTTTTGGGAGAACTCTGTGTGTTAATCCTTGTACAGAAGTCTAAGGACATGAAAGTGCGGGACAATCCTAGTAAAAGGGATGATCTCCAAGGACCTGAGGGAATTCAGAGCAGAGGATACTTCTTATATCGGCCAAGAAATGGAAGAAGATCCCTAGAATTTGATTAAATATAAGGTATGGGGTATTGAACTGAACAGCCACAACCTTCATAGAGTGGTCCAGACCTCTGCCACAACCCCTTAATGATCATTGTACAGTGATGTTGAATGTACACAATGAAATTAAAGAATCCAAA

Function

NR:

description
neuromedin-U-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978400.1 False 776 mRNA 0.45 7 74901557 74911349
XM_021601337.2 False 823 mRNA 0.45 8 74901559 74911344
XM_036978399.1 False 821 mRNA 0.45 8 74901559 74911345
XR_005051860.1 False 686 mRNA 0.43 9 74901560 74909778
XM_021601336.2 False 865 mRNA 0.45 9 74901563 74911339
XM_021601338.2 True 680 mRNA 0.45 7 74901619 74911342

Neighbor

gene id symbol gene type direction distance location
LOC100135915 LOC106560272 coding downstream 10246 74848830 ~ 74891311 (-)
LOC118964644 kdr coding downstream 81250 74807206 ~ 74820307 (-)
LOC110524556 LOC106560268 coding downstream 400452 74405846 ~ 74501105 (-)
LOC110524553 LOC106560266 coding downstream 547464 74122303 ~ 74354093 (-)
LOC110523002 LOC106560265 coding downstream 825966 74062228 ~ 74075591 (-)
LOC110523004 NA coding upstream 50028 74961377 ~ 74968484 (-)
LOC110524565 LOC106560282 coding upstream 115259 75026608 ~ 75036101 (-)
LOC110524566 NA coding upstream 137096 75048445 ~ 75049425 (-)
LOC101268909 LOC101268909 coding upstream 171117 75082466 ~ 75091633 (-)
LOC110524567 LOC106560283 coding upstream 182269 75045027 ~ 75099520 (-)
G438951 NA non-coding downstream 54941 74844036 ~ 74846616 (-)
G438959 NA non-coding downstream 65452 74835494 ~ 74836105 (-)
G438957 NA non-coding downstream 125355 74775199 ~ 74776202 (-)
G438952 NA non-coding downstream 130165 74770467 ~ 74771392 (-)
G438696 NA non-coding downstream 192615 74708660 ~ 74708942 (-)
G439012 exoc1 non-coding upstream 20822 74932171 ~ 74934342 (-)
G439065 NA non-coding upstream 53412 74964761 ~ 74965137 (-)
G439076 NA non-coding upstream 81787 74993136 ~ 74999899 (-)
LOC110524526 LOC106584218 other downstream 1491218 73370439 ~ 73421683 (-)
G437079 NA other downstream 1754429 73146358 ~ 73147128 (-)
G437074 NA other downstream 1776519 73122112 ~ 73125038 (-)
G437054 NA other downstream 1806221 73094794 ~ 73095336 (-)
G436873 NA other downstream 2125689 72774561 ~ 72775868 (-)
G439594 NA other upstream 352124 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 659900 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 1675109 76586458 ~ 76590370 (-)
G441483 NA other upstream 1991033 76902382 ~ 76902771 (-)

Expression


Co-expression Network