LOC110523005 (LOC106560277)


Basic Information

Item Value
gene id LOC110523005
gene name LOC106560277
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 74972063 ~ 75017851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979060.1
AGGTTTCTGTTCGATTGTCTGTGCGCTTTGCCGTGCGTGCGTGTCGGTGCGAGCACCCGCAGCATCAGTAACACAAAGAGCGTCGAAGAGCTGTGGATGGGAGATACAAGGCGCGGTGGGCAACTTCAAGACCGATTTGCGGGCAAACAAGATCACTTATAAGAGAGGCGACGACAGGGCAAATTCCAGCCGTTCAGACGCGTGTttgggaagaggaagaagaaggcaGCAGAGCTGGACTTCAATACAGCAGAGCTGAAGGCTAGCTTCTCCACAGGGGAAGTGTCTAACGGAGTCATCTCAGATGATGAGGAGACCAATCAAAATCTGAGGGAGCTGAACCCCATTGGGTCTCAAGCCCTCTCCCACGACAGTGTGTTTATCCCAGAAGAAGCAGTACAGGAGCTCAGCCCAGAACAAACCATGTCCCAGGAAAACGTCTCCGATAAAGTCAGGAACTTGCAGCGGCAGATAGCACAGAATATCAAGTTTGGCCAGAAGCACCCCTCTCTGAGGAAGAGTGAGGGAGACGAGGGCAGCTCGGATGAAGAGGAGGTGCCCAATAGCCCTCTGAGGGTCTTAGCCCAAGTGGAGGCTGAGCCAGTGGACACAGAGCCAAGGGGGGCCAGTCAGGACCAAGAGGCCGGTGAGAGCCATGGAGCTCCCCAGGCTGAAGTCCCCAGCACTCCAGTGAAATCTTCCAGGTCCAAACAAGTTCTTCCAGCCATCGGCACCATTGAGTCCATCGACCTGGATGAAGTCTCACAGTCTGTCCCTCGGCTGGACAACACCGCTGCCAAGCATAAGCTGTCTGTCAAACCCAAAAACCAGAGGATCTCCCGCAAGCACCACCGGTATACACAGGATCTGCAAGAGGTGGATATCCCTGGCATACAGCAGGAGGAGAAAGATGCAGCAGACAGCCAACACAGGAACGCTGAGGAGGAGACACCCCCAGAGAAAACCAAGAAGCAGAAactgcaggaggaggagagatgggagtccaggagaaagagagaactggcggaacagaggcacagagaggaagaggaagataggAAGAAGAAAGCAGAGGAGTGGCGGCTGTGTGAGTTAGAGGAGGAGCGATGTTGCGAACAAGAGGAGGGACGTATACTTAaaaaggaggaggaaagggggcagagagaggatatggagaggaggatgaaagaagaagaggagaggaggcagagagaggagatggagaggaggatgaaagaagaagaggagaggaggcagagagaggagatggagaggaggaggatgaaagaagaggaggaaaggatagagaaagaagaagaaagaaggatGAGAGAGGATTTGGAGCTTATGCAacgagaggagaaggagaggacactggaggaagaggagaaagaggaagaggaaaggagtaggaaagaagaagaggagaggaagcagTGTGAACTGGAGGCAGAGTGTCTTCGTGTAGATGAGGAAAAGAGACTAAAAGAggcagaagaggaggagagaatgacaAAGCAGGTGAAGAAAAAGAGAAAACTGCttgcagaggaggagaggaagaaaaatgaggaggaggaggaggaggagaagaggctgTGTGCAGAAGCGGCTGCGAGCAGCTCGGACcctgagaggaagaggagggcagaggaggtgcgctggagagagatggagaagagacagaggccGTTCACCGTCAAAGGGTCCTCTGGGGAGAAGCAGATCCTGTTCCAGAAGGTCAACCTAACGCCTGTTATACCGGCCTCCAGTCAGCAGGGGAGCGCTGtgactgaacacagagagagagccaagGCCTCATCGCTTGGAGGAGCTGACTCCCCCACCCTCCTGTCTTCTCAGTATGTCCGCCACACAGCCATCCTGGTGACAGGTTCCCAGCTATGTGGGACTGCTGTCAACCTGGACCATATCAACGAAATCGCTTGTAAGTCTCTCCTGGGTCTGGCAGATGAAAAGAAAGCTGCCATGGGAACCCCACCACCAACCAAGAGCAAGACCCCACCAGTACGTAAGTCTGGAAAAACCAAATCCCTCAGTGAGTCCACAGACCAGTCCAGTGCAGCCGTTCTTGCAGAGTGGGCCAGTATCCGCTGCAAGATATTTAAGGGGGCAGAGGAGGGGAAGTATGAGGAATACCCAGACCCCCATAGCCAAAGCCGACCCAGCAGTGAGGACCAGAGTCCGTTCCCCCATACCAACCTCAGGAAGACCATGTCCGCCGGCGCCAAGTTCTCCATCACTCCGGCCAGGAAGAAGTTTTCCGACTCCAGCAGGAACTCTGAGGTGTTGAAAccggaagagaaggaaggaggaagcCCAGCCTCTGCTCTCTCCAACACCTCCTCCAGCACCTCTGTTCCCTCTGCAGCCTCACCAGCCCCAGGCAGCAAAGCCCAGAGCAGGGGTGGTAAGACCGTCCGGATCGCAGACGGAAAAGGGGAGTGCATGTTTGCCAAAGACCTCCCATCGTTCATAGTCCCCAGGTCTTCCCAGTGGTCCCCCAGACCTGAGGGGTCAGTGACAGACGCTGTGAGCCTGGGAGGAGAATCAGAGGACTCTGACGGccgggaggaagggagggagcagGGCCAGCCCTCTCCGTTTGGGATCAAGCTGAGGAGGACCAACTACTCCCTCCGCTTCCACAGTGATCAGTCGACAGATAAGAGGAAGAAGAGGTACAGCGCCGGTGACAGCTTCAACGGTGTCCCCTCACCTCTGACCCCCATTGACCCTGACTCTGACACCTCAGTTTTCTCTGATAGATCCAGCCCTGCGTCTCCATTCAGAGAGAGCATTCCCGGGGTAAAGCCTGGACATATGGTTGTATCTCTTCCAAAGCCCCGGGCCAAGGCAGGCAAGTCTCCCACCCCTTCCATGCACAGCGAGGAGGAGAAGCCTTCCAAACCCTCACTCTACCAAAGACCGAGCACATCTCCTAAACctgccacccctcccccctctccactccccaaGGTGGGCAGAGGGGGTTCAAGCGATGCAGTGGTCCAGAGGACGAGGGTGGGGGCTGATTCAGCTGGCCATGAGGAGCGAGATGAGAGGAGGGAAGAAACCTCAGCTGTGGCCCAGCTCCACAGGAACGGCCAGGGACAGGGGGGTCAGAGGGAGGAGGAGCCCAAGGAGAAGAGGACCTTCTTCCCCTCCATCAGTATGCCCTGGAGGGAGAAGGCTGACAGGAAAACGGAGCTCATCAGGAAAGAGGGGAAGCCATCGCTGCAGAGCAGGCACTCGTTAGACAGCGTACGGGTCCAGGACAAGGAGGCGGGCCCTCCGTGGATCACTCTGGCGCTGCAGAAACAAAAGGGCTTCAAAGAGCACCAGCAGAGCCGAGACGAGCGCCGCAGCAATAGAGAGGCCAAACTGCCTGAGAAACAGGCCAAGGACAAAGACAGCTGTGTGTTGGTTAGTCCTTCAGAGGGTAAGGGGAGTGGAAACACCAGCCCTCCCAAATCACAGACACCGGAGGAGGCCAAGAGACCAGACACCCTCCTGGGCTGCTTTGAGCGCCGGGACCACCTGAAGAAAGCCAACACTCTGCCCAGCACAGTCACAGTTGAGATTGCAGACTCCACACCATCGCCCCCTGCAGTGAAGGAGGTGACCAAGCGCTTCCCGTCCACTGACTCTCCCCAGGTGTCCACTGAGCCGGCCTGGTTAGCTCTGGCCAAGCGCAAGGCCAAGGCCTGGAGTGACTGCCCTCAGATCATCAAATaacctcctctctaacctctacacTGCAtcagtactgtacacacactgccCATGAACTATGACCCCTGTCCCAAACCCTCCcgacctctcctctctgcccctgATCTGCCCCTGCACTCTAACCTCAACCCAAGCCTCCCCCTATTTCACCATAACCATGTACTTGTATGATTAAAAGTGTGTTTCACATTCATAATAtaaacacagtcacacatttACAAACACGAACACTCAGTACAAGCATGCACTTATACAAACACCTGAAAACACAAAGTTTAAGATTACCTGGCTGTATGTTATCAACTATATAATATCTTCCAACAAGTCAAAAGATCCTACTGTAGCCAATCATGGCCACTGCTGGCCTTTGCAATAGCCAATCCCAACCCTTACTTCCCAACAGTAGCCAATCAAAGCACCACGGCTGTAAATAGATCATGCATAACATAATACAAGATAAAAAAGCTTATGTATTGAAAAGATCAATCCCACAGGTCTGAAAAGGGATATAGATTCTTCATTCAAGGGTACTTTGGGAACAGTGTTTTAAGGGCTACCAGTAACCAATAAACCAACCTGACAGATGATCACCCAGTTGTATCACCCTTAGAACCACAATATTTCTGTTACCTTATCTCGTGGGTATTATTTCAAGCACTGATTTTAACAGTGATGAAACAATATATTTGTAATCTCTGAGCCTTGTCTGCGTTGTACAAAAGCTTCTTTTTTTAAAACTTGTATTCAAAAGCAGTACTTAGTATAACTATTCTCACTGTGCCCGTGATGACTGTGACAGCTGTCTAAGATACTATATtgcagaaaaaaaaaagaaaaaaaaaagaaaaaaaaaatcccttaacaAAGTTGTTTGAAAATCACCGCAGTTTGTAAAATAACACTAAAATCTGTCAGAATCAAACGTCGACTGCACTGAAACACAGCACTAAAGACCAAGGTTCAAGTGGTTGAATTGCACAGTATTCTCACCATTCTAATGTGTCATGGATTTAGCTTTGCTATGGAATGAGACTACCTGCCTGCTGTAACATCCCATGTGCTCAAGTCACTGCTAATGTGATGATCCATAAGGCCTTTACATGGTCCTCCAGCATTTGGAAAGTCACATTCTCTGAATCCCATCATTGGACAAGTTAAACTATATCACATCCTCTTAATTTACCTCAGTGTGATTTGAACCAATCAGCCCTGCTGTGAGAACCTCTGCTGGGCTGTTTGTTGGTGACTGACAGCGTATGGATATTTCTTCCATCATTATCTTCCTCTCACTACTCAATGTAATGATCTGTATGTATGGATGTAAGTATGGATGTGTGTTAGAGGCGGTTTTACCAGGACATTGGTCAGAAAAAAAGCCTGTAAGGCTCAGTCAGTCACTTTGTCATTTATTTCtattcttttttttacatttggtCGTGTGCAATAGTGTAGTATACAAAGTGTTGTATGTAAAAATAATTGGGGTAATAATTGCACTTTTTTGTCCCACTTAAAAAAGGTATTCATGAGAACATCTTTAAAGTGATGCAAATGTtatgaattataaattaaatactGATGTCTGAA

Function

NR:

description
uncharacterized protein KIAA1211 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979060.1 True 5343 mRNA 0.51 10 74972063 75017851

Neighbor

gene id symbol gene type direction distance location
LOC110524562 exoc1 coding upstream 25993 74932150 ~ 74946070 (+)
LOC110524561 LOC106560271 coding upstream 130611 74835448 ~ 74841452 (+)
LOC110524560 LOC106560270 coding upstream 201895 74729349 ~ 74770168 (+)
LOC110523003 LOC106560269 coding upstream 309614 74638146 ~ 74662449 (+)
LOC110522886 pdx1 coding upstream 341390 74628427 ~ 74630673 (+)
LOC110524564 LOC106560280 coding downstream 13938 75031789 ~ 75041377 (+)
LOC118964645 LOC106583873 coding downstream 43330 75061181 ~ 75068745 (+)
LOC110524571 LOC106560285 coding downstream 143466 75161317 ~ 75178287 (+)
LOC110524576 uhmk1 coding downstream 314602 75332453 ~ 75347896 (+)
rgs4 LOC106560295 coding downstream 543327 75561178 ~ 75572148 (+)
G438841 NA non-coding upstream 6458 74965368 ~ 74965605 (+)
G438836 NA non-coding upstream 21377 74950288 ~ 74950686 (+)
G438831 NA non-coding upstream 43496 74928053 ~ 74928567 (+)
G438807 NA non-coding upstream 69586 74901153 ~ 74902477 (+)
G438628 NA non-coding upstream 272966 74698822 ~ 74699097 (+)
G438904 NA non-coding downstream 79116 75096967 ~ 75099072 (+)
G438908 NA non-coding downstream 83350 75101201 ~ 75101449 (+)
G439139 NA non-coding downstream 91745 75109596 ~ 75110029 (+)
G439210 LOC106560285 non-coding downstream 187613 75205464 ~ 75209077 (+)
G439214 NA non-coding downstream 197008 75214859 ~ 75215093 (+)
G438719 NA other upstream 195594 74772009 ~ 74776469 (+)
G437327 NA other upstream 1476979 73456301 ~ 73495084 (+)
G436588 NA other upstream 1976328 72995499 ~ 72995735 (+)
G436403 NA other upstream 2467628 72503460 ~ 72504435 (+)
G441903 NA other downstream 2250361 77268212 ~ 77268766 (+)
G442273 NA other downstream 2540479 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 3227988 78245839 ~ 78288092 (+)
G445204 NA other downstream 5198627 80216478 ~ 80217090 (+)

Expression


Co-expression Network