LOC110524565 (LOC106560282)


Basic Information

Item Value
gene id LOC110524565
gene name LOC106560282
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75026608 ~ 75036101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604358.2
TTTTGTATCCCTGTAGGTTGAGCCCGTTCGTTAAGCCGTAGCTCTGTTGTCAACACGTGGCCAGTGTTTGAAGCGTGGAGATAGATACACGCTGTGTGAAGTAGACAAGCACCGGAGGCCCAGGAACTTAAGAATGAGCGAGTTCGAAGAATCTGGCATCGGAGAAGAGTGCGGCGTTTTCGGCTGTGTTGCCGCAGGAGAATGGCCAACACAACTAGAAGTTGCCCAAGTGTTAACTTTGGGACTTGTCGCGCTACAACATAGGGGTCAGGAAAGTGCTGGAATCGTCACAAGTAATGGAGTCAACCCACCAACGTACAACACCCTCAAGGGGATGGGGTTAGTGAACAATGCCTTTCCACCTGAGGACCTTCTGAAGCTGCGCTATGGTAACCTGGGCATCGGGCACACACGCTACTCCACCACGGGCATCTCTGAGCTGCAGAACTGCCAGCCCTTTGTAGTGGACACACTGCACGGCAAGATAGCTGTGGCACACAACGGGGAGCTGGTCAATGCAGCCGCACTGCGTAAAAAGGTGATGCGTCACGGCGTGGgtctctccaccagctcagacagTGAGCTCATCACCCAGCTGCTGGCTCTGACTCCGCCCATGGAGGAGCTGGATGCCCCTGACTGGGTGGCCAGGATAAAGAACCTGATGCATGAGACCCCTACATCCTACTCACTGCTGGTGATGTACACAGATGTGATCTATGCTATCCGTGACCCGTACGGAAACAGACCGCTCAGCATCGGACGCCTCGTCCCCATTTCTAAACTCCACACTGCAGGTGCtggcgagagagacacagagggttGGGTGGTGTCATCAGAGTCCTGCAGCTTCCAGTCAATCGGTGCCAAGTACTACAGAGAGGTGATGCCTGGAGAGATAGTCCAGATCTCCAAACACGGTGTGAAGTCCCTAAGCATTGTCCCTCGCCCCGAGGGAGACCTCCCTGCCTTTTGCATCTTTGAATATGTTTACTTTGCCAGACCAGACTCCATATTTGAAGGTCAGATGGTGTACACAGTCAGGCAGCGCTGTGGACGGCAGCTAGCCATTGAGGCCCCTACAGAGGCAGACGTGGTCAGCACTGTGCCTGAGTCTGCTACTCCTGCTGCACTGGGATACGCAGAGCAGTCGGGACTGCCGTACGTAGAGGTTCTGTGTAAGAATCGCTACGTTGGGAGGACATTTATTCAACCAAACACACGGCTCAGGCAGTTGGGGGTGGCCAAGAAGTTTGGTGCGCTGACAGACAACTTTGCAGGCAAGCGGGTGGTGCTTGTTGATGATTCCATCGTCAGGGGCAACACCATCGCCCCCATAATCAAGTTGTTGAAGGAAGCAGGAGCCACAGAAGTCCACATCCGCGTTGCCTCCCCACCCATCAGGTTCCCCTGCTACATGGGCATCAACATCCCCACAAAAGAGGAGCTCATTGCTAACAGGCCAGAGTTTAAGGACATTGCTGGCTACATTGGTGCCACCAGCGTGCAGTATCTGTCAGTGGAGGGCCTGGTGTCAGCTGTGCAGGGGGGAATCCCCTCCCTCCAGAAGGATGAGCGGATCAGCACCAACACCAAGGCCAGCAGGAGAGTGGGCCACTGCACCGCCTGCCTCACAGGCAAATACCCTGTGGAACTGGAGTGGTGACCGCTGACCCCAACCTCAAACCACAACCACTATCTTGACCACACTACTGCTGTTATTGTACTTAACCTAATGTCTAAAGTGTGAACCTTAACCATACTCTAACCAAGGAAGTGCCTCTTGGAGCCTACTTGGTCACAGTATGGGTGCCTGAGGCACAGCCTCACCTTGACAAGTAAACACAGAATTGCTGTAGCTACTACATTTTTCTTGAAAGCTGTTACGGTTTGAGTGGTGCCTGGCCTGCTTTGGTCTGAAACCGTTGGGCCTTGATGCTTCCACTCTGGCAACACAACAACCTTATGCACGTCAATGTATTACATTTCAACCAGCCTTTTCATTCCACATAATATTCCATTGTTATTAAAAGCTAGCATTCTGA

Function

NR:

description
amidophosphoribosyltransferase-like

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0004044 amidophosphoribosyltransferase activity molecular_function

KEGG:

id description
K00764 purF, PPAT; amidophosphoribosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604358.2 True 2045 mRNA 0.53 11 75026608 75036101

Neighbor

gene id symbol gene type direction distance location
LOC110523004 NA coding downstream 58124 74961377 ~ 74968484 (-)
LOC110522887 LOC106560273 coding downstream 115259 74901557 ~ 74911349 (-)
LOC100135915 LOC106560272 coding downstream 135297 74848830 ~ 74891311 (-)
LOC118964644 kdr coding downstream 206301 74807206 ~ 74820307 (-)
LOC110524556 LOC106560268 coding downstream 525503 74405846 ~ 74501105 (-)
LOC110524566 NA coding upstream 12344 75048445 ~ 75049425 (-)
LOC101268909 LOC101268909 coding upstream 46365 75082466 ~ 75091633 (-)
LOC110524567 LOC106560283 coding upstream 57517 75045027 ~ 75099520 (-)
LOC110524568 LOC106560284 coding upstream 75918 75112019 ~ 75148466 (-)
LOC110524570 LOC106560285 coding upstream 135176 75171277 ~ 75209062 (-)
G439076 NA non-coding downstream 26709 74993136 ~ 74999899 (-)
G439065 NA non-coding downstream 61471 74964761 ~ 74965137 (-)
G439012 exoc1 non-coding downstream 92266 74932171 ~ 74934342 (-)
G438951 NA non-coding downstream 179992 74844036 ~ 74846616 (-)
G439571 NA non-coding upstream 178662 75214763 ~ 75215003 (-)
G439574 NA non-coding upstream 195504 75231605 ~ 75232553 (-)
LOC110524574 LOC106560290 non-coding upstream 294299 75299095 ~ 75333476 (-)
G439653 NA non-coding upstream 311447 75347548 ~ 75351451 (-)
G439002 NA other downstream 98811 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 1616269 73370439 ~ 73421683 (-)
G437079 NA other downstream 1879480 73146358 ~ 73147128 (-)
G437074 NA other downstream 1901570 73122112 ~ 73125038 (-)
G439594 NA other upstream 227372 75263473 ~ 75265403 (-)
G439788 LOC106560295 other upstream 535148 75571249 ~ 75575569 (-)
G441168 glrx2 other upstream 1550357 76586458 ~ 76590370 (-)
G441483 NA other upstream 1866281 76902382 ~ 76902771 (-)
G441630 NA other upstream 1977898 77013999 ~ 77021375 (-)

Expression


Co-expression Network