LOC110524571 (LOC106560285)


Basic Information

Item Value
gene id LOC110524571
gene name LOC106560285
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75161317 ~ 75178287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604363.2
TTGTGGGTTTTAATTGGACCAGATTCTCCAAATTAACGGGAATCCCTGTCAGAGAAGAAACCggcagcctgcctctctctcagtccttaTAAAAGCAGACACAGTGCAGGACTCAGCAGGATTTGAACGAAGGGTCACTCTTTCAAGGTTGAAACAGAAGACACCTGTGAAGATGACTCCATCAGTTATTTCTGCTCTTCTTCTGCTGGCTTGTGCTCTCCCATTCAATTCTGCTCAGTCAAGCTGTAGTGGGAGATGTGGAGGAGAGTATTATAGGGGTTACATGTGCCAGTGTGATTATGACTGTCTCACTCACGAGGAGTGCTGTAAGGACTACGAATCCCAGTGCACCACCAGTGACTCGTGTAAAGGGCGGTGTGGCGAATCCTTTAAGAGAGGCAGGCAGTGTGACTGTGATCCGGACTGCGCTCGCTACAGCAAGTGCTGCCCAGATTACAAGAGCCAGTGTGGTATTGAAGAGCCAGAGCCTCCCCAGATCCAGCCAAATGAGGAGCCAGAGATGACTCCCAATCCACAGGAGGAACTAAATGAAGATGACCAGTTCATGCCATTGGTCACTCCAGAACCAGAACTCCAGGATgaacagggagatgATGTAAAGGGTGAGACCTGGCCAGaactccctgttccctctcctgAGGCTGAGCAAGAGACCATTTTAGAGGGGAACTACACACCCTTCCCTGAGGAATGGGATCCAGAGGCAACACCTGGCCAAGAGGGGACCCCACCAGCAGAGGCCAACCCCTACCTTGCTGAACCAGCCAAGGAGGTTCCCACTGAGACAGCAGACTCCAGTGTTCCTGAGGGACAGCCTGATTCCAGCAGCAGCCCGTCTGCATTAGACACAACTCCCCCTAGATCCTCCTCTGAGCCCACCCCTGCCTCCCCCCAGCCCTCCGACCAGGTCTTCCCGAGCTCAGAGCCCCAGCCTGGGCCTACTCCTGCAGAGGACACCCTTGAACTCCTATCTGAAGGACAGGGTGAATTGGACCCTGAGGGTCAGGAGGCAGAATCTGAGAACACACTGCCAAAGGACTCTGAACCCACACCCTCAAACCTAGAGAATGCTGCCACCACACCAGCCTCCGACCCAACCTCTACCAGCCCCACACAGGGTACACCCTCAGGCCCAGAGGATCCGGAGGCTACCCCTGCATCTCTAGACAGCACCACCCCCTCCACCAAGCCTGACCAGGCACCCAGTGCCCCTGAAGGAGCTACCCCAAGCTCAGAGCAGGATAGCTCCAAGGAGAATGCCCCAACAACCACCCCTTCAGACCCACAGGATCCCAATGCGGCCTCTGAGGCACCAGCATCTGATAGTGGTCCCGAAGCTAAACCTGGCAGAGTGGACACCCCAGAAAGTTTTGATGACAGCAGTATCCCCCAGACTGGAGATCTGGCAACGCCACCCACCTCAGATCCTCAGGCCACATCCACAGACCCAACGGGACATGAAGAGGAAGGAGACAAGGCCGCACCAGAGGAGACCACTACAGACCCCATGAAGCTCACTCTCGTCCCCACCATCAAACCCACCCCCAACAAAACCACGGAGAAACCCAAGCCCAGCAAACTCACAGGGAAACCCAAGCCCAGTCCTACACGGTCCAGCACCCTCACTGATATCAACAAAGATCTGGGCACAGACAACCCCAGGGACTACCAAGCAGATGAACACAATGACACCAACATCTGCAGCGGTCGTCCCGTCGGCGCGGTGACTACGCTGAGGAATGGGACCGTGGTGGTTTTCAGAGGACACTATTTCTGGGTGTTGGACAGCAATAGGGTGCCTGGACCTGCCCGTGGGATCACAGACGTGTGGGGTGTCCCTTCTCCCATCGACACAGTCTTCACCCGCTGCAACTGCCAGGGCAAGACATACTTCTTCAAGGGTTCTAACTACTGGAGGTTCGAGAATGGCATGATGGAGCCCGGCTACCCCAAGCTAATCAGGGCGGGCTTCGATGGGCTGCAAGGACAGATCACGGCTGCCCTGTCTGTGCCAGAGTACCGCAAGAGGAGAGAGTCGGTCTACTTCTTCAAAAGAGGAGGCTTGGTGCAGAAGTATTCCTACCAGTCTGGCATCAGCCCTACATGCGGCAGGAAGGTCCACTACTCTGTTTATACCGTACGCAACCGTGTTGCTAGGCAAGCAGTGCCTCTGCTGGGACAGGAGATCAACATCCGTCTGACCTGGAGAGGCTTCCCGTCCACCGTGACCTCCGCCGTGTCCATCCCCACCCACAGGAAACCAGAGGGATACAACTACTACCTCTTCTCACGCTCCAAATACTACAACGTCAATATGGGAGATGAGCGACCTTTCATAGCAACTCCCCCGGTGAGCTCTGCTCCCCAGAAGAACTCCGCCAAAGACTTTTTCAACTGTCCAAAGGAAGTTTGAGGAGAAACAGCAGGGACATTCAAAAACAGATTCACTGACACCATTTTCCTAATGGATCTCATACTTTATTAGCATCATTATTCATAAAACCAAC
>XM_021604362.2
TTGTGGGTTTTAATTGGACCAGATTCTCCAAATTAACGGGAATCCCTGTCAGAGAAGAAACCggcagcctgcctctctctcagtccttaTAAAAGCAGACACAGTGCAGGACTCAGCAGGATTTGAACGAAGGGTCACTCTTTCAAGGTTGAAACAGAAGACACCTGTGAAGATGACTCCATCAGTTATTTCTGCTCTTCTTCTGCTGGCTTGTGCTCTCCCATTCAATTCTGCTCAGTCAAGCTGTAGTGGGAGATGTGGAGGAGAGTATTATAGGGGTTACATGTGCCAGTGTGATTATGACTGTCTCACTCACGAGGAGTGCTGTAAGGACTACGAATCCCAGTGCACCACCAGTGACTCGTGTAAAGGGCGGTGTGGCGAATCCTTTAAGAGAGGCAGGCAGTGTGACTGTGATCCGGACTGCGCTCGCTACAGCAAGTGCTGCCCAGATTACAAGAGCCAGTGTGGTATTGAAGACACCAAACAACCAGGCAGCACAACACCACTGAAGACTAGCTCATGTAATAACGTAAATGATGAAACACCAAAAGAGCCAGAGCCTCCCCAGATCCAGCCAAATGAGGAGCCAGAGATGACTCCCAATCCACAGGAGGAACTAAATGAAGATGACCAGTTCATGCCATTGGTCACTCCAGAACCAGAACTCCAGGATgaacagggagatgATGTAAAGGGTGAGACCTGGCCAGaactccctgttccctctcctgAGGCTGAGCAAGAGACCATTTTAGAGGGGAACTACACACCCTTCCCTGAGGAATGGGATCCAGAGGCAACACCTGGCCAAGAGGGGACCCCACCAGCAGAGGCCAACCCCTACCTTGCTGAACCAGCCAAGGAGGTTCCCACTGAGACAGCAGACTCCAGTGTTCCTGAGGGACAGCCTGATTCCAGCAGCAGCCCGTCTGCATTAGACACAACTCCCCCTAGATCCTCCTCTGAGCCCACCCCTGCCTCCCCCCAGCCCTCCGACCAGGTCTTCCCGAGCTCAGAGCCCCAGCCTGGGCCTACTCCTGCAGAGGACACCCTTGAACTCCTATCTGAAGGACAGGGTGAATTGGACCCTGAGGGTCAGGAGGCAGAATCTGAGAACACACTGCCAAAGGACTCTGAACCCACACCCTCAAACCTAGAGAATGCTGCCACCACACCAGCCTCCGACCCAACCTCTACCAGCCCCACACAGGGTACACCCTCAGGCCCAGAGGATCCGGAGGCTACCCCTGCATCTCTAGACAGCACCACCCCCTCCACCAAGCCTGACCAGGCACCCAGTGCCCCTGAAGGAGCTACCCCAAGCTCAGAGCAGGATAGCTCCAAGGAGAATGCCCCAACAACCACCCCTTCAGACCCACAGGATCCCAATGCGGCCTCTGAGGCACCAGCATCTGATAGTGGTCCCGAAGCTAAACCTGGCAGAGTGGACACCCCAGAAAGTTTTGATGACAGCAGTATCCCCCAGACTGGAGATCTGGCAACGCCACCCACCTCAGATCCTCAGGCCACATCCACAGACCCAACGGGACATGAAGAGGAAGGAGACAAGGCCGCACCAGAGGAGACCACTACAGACCCCATGAAGCTCACTCTCGTCCCCACCATCAAACCCACCCCCAACAAAACCACGGAGAAACCCAAGCCCAGCAAACTCACAGGGAAACCCAAGCCCAGTCCTACACGGTCCAGCACCCTCACTGATATCAACAAAGATCTGGGCACAGACAACCCCAGGGACTACCAAGCAGATGAACACAATGACACCAACATCTGCAGCGGTCGTCCCGTCGGCGCGGTGACTACGCTGAGGAATGGGACCGTGGTGGTTTTCAGAGGACACTATTTCTGGGTGTTGGACAGCAATAGGGTGCCTGGACCTGCCCGTGGGATCACAGACGTGTGGGGTGTCCCTTCTCCCATCGACACAGTCTTCACCCGCTGCAACTGCCAGGGCAAGACATACTTCTTCAAGGGTTCTAACTACTGGAGGTTCGAGAATGGCATGATGGAGCCCGGCTACCCCAAGCTAATCAGGGCGGGCTTCGATGGGCTGCAAGGACAGATCACGGCTGCCCTGTCTGTGCCAGAGTACCGCAAGAGGAGAGAGTCGGTCTACTTCTTCAAAAGAGGAGGCTTGGTGCAGAAGTATTCCTACCAGTCTGGCATCAGCCCTACATGCGGCAGGAAGGTCCACTACTCTGTTTATACCGTACGCAACCGTGTTGCTAGGCAAGCAGTGCCTCTGCTGGGACAGGAGATCAACATCCGTCTGACCTGGAGAGGCTTCCCGTCCACCGTGACCTCCGCCGTGTCCATCCCCACCCACAGGAAACCAGAGGGATACAACTACTACCTCTTCTCACGCTCCAAATACTACAACGTCAATATGGGAGATGAGCGACCTTTCATAGCAACTCCCCCGGTGAGCTCTGCTCCCCAGAAGAACTCCGCCAAAGACTTTTTCAACTGTCCAAAGGAAGTTTGAGGAGAAACAGCAGGGACATTCAAAAACAGATTCACTGACACCATTTTCCTAATGGATCTCATACTTTATTAGCATCATTATTCATAAAACCAACACCACAATGTTTTAGCAAGGACTCCACataacaaatcaaaaaaaaaagaaaaagatgaTTCATCATAACAATGAAATGATCAGTGATCACCATAACTACAGCAGATACATAATTTAGATTTATGGTAAACGCAGGTGTTCTCTTTGGAACCATGGTGACCAGTCTTGTAGCGGGAATGATGTCTTGTGGAGATGGAAATAATGTTGGGGCAGGAGCTCTGATCGGTTGTTTATCGTGCAAATCTCCTCCCAGTCCCAGTTACACCCCGTGATGGCAACGTCCCTGGTTCCCATCAAACGAGACATATTGGTACGAGACAAAGGTCTGCTTTattaatgtaaaaacaaatcaTTCTGATTCTGTACAGCGCCTGTATAATATATAATGCAAAGATGATGCTAATGTAACAAATCATTTTAGACGAAACATTTCTCTTCTGCATTTTTTGACTATTAAAATCGATTGAACATCAACAAT
>TU497242
GGATCTCATACTTTATTAGCATCATTATTCATAAAACCAACACCACAATGTTTTAGCAAGGACTCCACataacaaatcaaaaaaaaaagaaaaagatgaTTCATCATAACAATGAAATGATCAGTGATCACCATAACTACAGCAGATACATAATTTAGATTTATGGTAAACGCAGGTGTTCTCTTTGGAACCATGGTGACCAGTCTTGTAGCGGGAATGATGTCTTGTGGAGATGGAAATAATGTTGGGGCAGGAGCTCTGATCGGTTGTTTATCGTGCAAATCTCCTCCCAGTCCCAGTTACACCCCGTGATGGCAACGTCCCTCTCCTCATGCGGTTCTCTGTCCAGCGTTGGAGCTGTCGGCTGTGTCCTGGTCTAGAGGGTTTGGGCTGAGTCCTACTAGTGTCTGCAGAGCTGGAGGAGAGTTCCTGGCTGGTAGAAGGCAGGCCGCAGTCATCTGAGGCCTGGGTAGGTTCCTCTATCTCCCCCGCCCGAGACATTACAGGTTCCAGAGACACCTCCACAAGGTCTCCCCCCGGCGCCATGAAGACATCATCCCTCTCGTCCCCAGGACTTGGTCCTTCGCCCACCACCAAGCCTGGGGTTGAGGTGGTTACCATGGGAACAGACTGAGAGGTGTGTTCCGTGCCGCCAGATGGCGGGACCTCTGCAAATATGGACACTGGGGCAGCCACCTGCAGGGGTGTGGTGGGAACACTGAGGCCCCCAGACTCATCCTCATGACCAGGCAGGAACAAAGGACTATCATACATCCCAAGAcCTCCTTGTGATGCCAGATGTCCCAGGTCAGAGTGGGAGGTGGTGGTCTGGGGCATCAGGTCTTCTGGGGTGCCGAACCTGAACCGGGGTACACCAGCCACCTGGGGAGAAtgGATAGCTTCTGCAAAGCTGTCAGAGCGGTGTGGCGCCACCAGAGTAGGAGTACTGGGAACCATCCTGTCATCATCGTCAAAAAAGTGCTGTCCGCCGCTGGCCATCCCAGGGGTGAGCTGAGGGACTCTGCCTACCGACTGGCGAAGCATGGGGCGCTGAGCAGGGGGTCCCCGTTCCTGGTTGATGTTGAGGCGGGGGGGCAGCGGATGGGGTGCTCTCCGTGGAGACTGGTGCATTCTGGGAGCAGAGCTGGTTGGGTCACTTGAGAAGGCTTCCATACTGCTGCTGCCCTCGACTGACAGAACAGGAGACGACAACTGTGGTTTAGTTTGGCAGAGTTCCTACATCAAAATCCAACACAAACGTAATCTCTCCATTCAGACAGACACAGTTACATCATTGTCTGTTGAACTAACAGATACCCCAATAATATTGTAAAatag

Function

NR:

description
nucleoprotein TPR-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604363.2 False 2528 mRNA 0.55 14 75161317 75171344
XM_021604362.2 False 3080 mRNA 0.52 15 75161317 75171821
TU497242 True 1338 TUCP 0.53 9 75171304 75178287

Neighbor

gene id symbol gene type direction distance location
LOC118964645 LOC106583873 coding upstream 92572 75061181 ~ 75068745 (+)
LOC110524564 LOC106560280 coding upstream 119940 75031789 ~ 75041377 (+)
LOC110523005 LOC106560277 coding upstream 143466 74972063 ~ 75017851 (+)
LOC110524562 exoc1 coding upstream 215247 74932150 ~ 74946070 (+)
LOC110524561 LOC106560271 coding upstream 319865 74835448 ~ 74841452 (+)
LOC110524576 uhmk1 coding downstream 160632 75332453 ~ 75347896 (+)
rgs4 LOC106560295 coding downstream 389357 75561178 ~ 75572148 (+)
LOC118964720 LOC106576333 coding downstream 1090473 76262294 ~ 76264534 (+)
LOC110524585 LOC106560359 coding downstream 1367171 76538992 ~ 76541623 (+)
LOC110524586 LOC106560300 coding downstream 1391668 76563489 ~ 76566464 (+)
G439139 NA non-coding upstream 51288 75109596 ~ 75110029 (+)
G438908 NA non-coding upstream 59868 75101201 ~ 75101449 (+)
G438904 NA non-coding upstream 62245 75096967 ~ 75099072 (+)
G438841 NA non-coding upstream 195712 74965368 ~ 74965605 (+)
G438836 NA non-coding upstream 210631 74950288 ~ 74950686 (+)
G439210 LOC106560285 non-coding downstream 33643 75205464 ~ 75209077 (+)
G439214 NA non-coding downstream 43038 75214859 ~ 75215093 (+)
G439189 LOC106584137 non-coding downstream 48391 75220212 ~ 75224041 (+)
G439190 NA non-coding downstream 56088 75227909 ~ 75229974 (+)
G439218 NA non-coding downstream 60326 75232147 ~ 75232560 (+)
G438719 NA other upstream 384848 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 391151 74729349 ~ 74770168 (+)
G437327 NA other upstream 1666233 73456301 ~ 73495084 (+)
G436588 NA other upstream 2165582 72995499 ~ 72995735 (+)
G436403 NA other upstream 2656882 72503460 ~ 72504435 (+)
G441903 NA other downstream 2096391 77268212 ~ 77268766 (+)
G442273 NA other downstream 2386509 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 3074018 78245839 ~ 78288092 (+)
G445204 NA other downstream 5044657 80216478 ~ 80217090 (+)
G445211 NA other downstream 5063059 80234880 ~ 80235428 (+)

Expression


Co-expression Network