rgs8 (LOC106560297)


Basic Information

Item Value
gene id rgs8
gene name LOC106560297
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75671713 ~ 75706466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604380.2
ctccctccctctgtttctccctttctccatATTCCCCTCTCCATAcgcctgtctctgtttctctttctccaatGTTTTGAAACCGATGAGCATGCTGTATGGCTCCTAGCCTCCTACTCATCACTGCAactgtaacagtaacagcagagaTATCGCCACTCAAGAGGAGTGCCATCGcagacatctacacacacagtcacacacacacaccaacgttGGATGAACATCGGCTTATTCTCCTCAAACGTACgctggggaggtagagagagagagagtgtctaccTGCGCTTCTCTCATACACAACAGGGCTAAGAGAACTCCAGCAACCACCAGTGATCTTAGAGGAGTCCTTGGATTACTGAAGCTTGACTGACCATTCTAACAAAACCAAAAGGCAACGCAACAAACCATGAAGACCAGACTAGCCTGCCTGTCCAATAAGTCTGACTCCTACACCGACTTCACTGAGTTCCTGCCCCCTGCCCAAGACAGGACCACCAGATGCCTAAAGCTGACAAAAGAAGAGGTCATTCGATGGGCAGATTCCTTCGATGTTCTTCTATCGCACAAGTATGGCCTGGCTGCCTTCCGGGCTTTTCTCAAGACTGAGTTCAGCGACGAGAACATTGAGTTCTGGATGGCCTGCGAGGAATATAAAAAAATCAAGACTCCCGCTAAACTGGTGACCAAAGCCAACAAGATCTACAATGAGTTTATCGATGTCAAGGCTCCCAGAGAGGTAAACATAGACTTCCGTACACGGGAGGTGACGAGACAGAGCCTTGAGGAGCCCACTCCTTCCAGTCTGAATGAGGTCCAGGCCAGGGTCCACAGCCTCATGGAGAAAGACTCTTACCCACGCTTCCTCCGCTCCAAGATCTACCAGGACTTACTCAAAACGCAGTACACACACTGCCAACGAAACTCTGTCTGAAGAACACACACGTGCAGCCGCAGATACATATACGCACACTTAAGTGATAATGCCgtgaagccagtgtttggaggatatattggcacaggtgtTGCTAGAGACAAAGTCGAGGGtcggcaaaccgtgccaatatatccccTAACATCAGcttcttgggcattatcacttttatacaacgggttagcAACATATTAAAAACATTAATTTGATAAatgtattcatactatttcatccatCCACAATATATTGTcccaaatctagggttgctacccaagctggcTGGTTGTtcattctatcggttcggttgctagagacgcgacccagtcattcagatgttttgttctgtatctatggaggcGACACAGTTGTTCCTTCTAAAtattccattgccatactggctagcaacgttcttatcccttgcttgctagctagcaaactacggctaacttacagtcacatcaaaaagtgcagccagaacaacagcaagcatttgcatttgtttaagctgttttctagtgacatttatttggatacatccataacaatgagctagtGAGGCACAATTTCGCCTGGCATATAACATCTGCTCACTCGTCAGGATACAGTCGttgagctagccaacaacacagctaatgcaatcacttcaaactgaaactggaaagactgcaaactagctgcacttcatttCGTTTTACCTTGTTTCAATTgatatttctttgtatatatccataaaaaaatatgccagctgattcatgatttcgactggctgagaaacgcagGTCTCGTTCcgatgggacagctggagatcgaaattgaatattgaaacaatgttgtaaatgtcagagagacatgctgcaaggtttatacaaatctcctctgatgaaaactaaatgttagtctaaaataaatgtgagataatatctagatgctttttatagtggagatcaagtttataaattgcttggTTAGGCTGACGGAACAGTGGATtccgcagtcagatggaacaaagTAATTAGGCATTTTAAGttcatagatttagccagtggtaacttgtggaatagacaccggctggattgctgttttaaccaatcagaattcaggattagacccacccgttgtataaacacacacacacaaacacacacacacacacacacacttcttcagTAGTTAGAAGAACACAAGTAACCATTATTCCTCAAGTCCTAACTTGAGATATATGTGCGTAAACCATTTCAGTCTCCCATTGACATAGTGAATCATGTGAAAGTTTAAGTTAAAAGATTAAGTTTAAGTATCAACTTAAGATTCTAACAGAGGGATTCATAGAATTTAGACATATCGTGATATTGTGTCGAGCTAGTTTGCACTTAGAAAACAAAATACCACAAGACCTTGTACTGTGTATACTTGTATTACTCTTATTAGACAACGTGTTGTTTTTGTTCATGTGTATTTATCCTCTCAATATATACTCATTTTGAAGTTGATACGT
>XM_021604382.2
TGTCTCCTTCCCTGTGCTGTGGCAGGACCATCTCTCACCTCATCTCCACAAACTACACATAAATCAGAACTCCAGCAACCACCAGTGATCTTAGAGGAGTCCTTGGATTACTGAAGCTTGACTGACCATTCTAACAAAACCAAAAGGCAACGCAACAAACCATGAAGACCAGACTAGCCTGCCTGTCCAATAAGTCTGACTCCTACACCGACTTCACTGAGTTCCTGCCCCCTGCCCAAGACAGGACCACCAGATGCCTAAAGCTGACAAAAGAAGAGGTCATTCGATGGGCAGATTCCTTCGATGTTCTTCTATCGCACAAGTATGGCCTGGCTGCCTTCCGGGCTTTTCTCAAGACTGAGTTCAGCGACGAGAACATTGAGTTCTGGATGGCCTGCGAGGAATATAAAAAAATCAAGACTCCCGCTAAACTGGTGACCAAAGCCAACAAGATCTACAATGAGTTTATCGATGTCAAGGCTCCCAGAGAGGTAAACATAGACTTCCGTACACGGGAGGTGACGAGACAGAGCCTTGAGGAGCCCACTCCTTCCAGTCTGAATGAGGTCCAGGCCAGGGTCCACAGCCTCATGGAGAAAGACTCTTACCCACGCTTCCTCCGCTCCAAGATCTACCAGGACTTACTCAAAACGCAGTACACACACTGCCAACGAAACTCTGTCTGAAGAACACACACGTGCAGCCGCAGATACATATACGCACACTTAAGTGATAATGCCgtgaagccagtgtttggaggatatattggcacaggtgtTGCTAGAGACAAAGTCGAGGGtcggcaaaccgtgccaatatatccccTAACATCAGcttcttgggcattatcacttttatacaacgggttagcAACATATTAAAAACATTAATTTGATAAatgtattcatactatttcatccatCCACAATATATTGTcccaaatctagggttgctacccaagctggcTGGTTGTtcattctatcggttcggttgctagagacgcgacccagtcattcagatgttttgttctgtatctatggaggcGACACAGTTGTTCCTTCTAAAtattccattgccatactggctagcaacgttcttatcccttgcttgctagctagcaaactacggctaacttacagtcacatcaaaaagtgcagccagaacaacagcaagcatttgcatttgtttaagctgttttctagtgacatttatttggatacatccataacaatgagctagtGAGGCACAATTTCGCCTGGCATATAACATCTGCTCACTCGTCAGGATACAGTCGttgagctagccaacaacacagctaatgcaatcacttcaaactgaaactggaaagactgcaaactagctgcacttcatttCGTTTTACCTTGTTTCAATTgatatttctttgtatatatccataaaaaaatatgccagctgattcatgatttcgactggctgagaaacgcagGTCTCGTTCcgatgggacagctggagatcgaaattgaatattgaaacaatgttgtaaatgtcagagagacatgctgcaaggtttatacaaatctcctctgatgaaaactaaatgttagtctaaaataaatgtgagataatatctagatgctttttatagtggagatcaagtttataaattgcttggTTAGGCTGACGGAACAGTGGATtccgcagtcagatggaacaaagTAATTAGGCATTTTAAGttcatagatttagccagtggtaacttgtggaatagacaccggctggattgctgttttaaccaatcagaattcaggattagacccacccgttgtataaacacacacacacaaacacacacacacacacacacacttcttcagTAGTTAGAAGAACACAAGTAACCATTATTCCTCAAGTCCTAACTTGAGATATATGTGCGTAAACCATTTCAGTCTCCCATTGACATAGTGAATCATGTGAAAGTTTAAGTTAAAAGATTAAGTTTAAGTATCAACTTAAGATTCTAACAGAGGGATTCATAGAATTTAGACATATCGTGATATTGTGTCGAGCTAGTTTGCACTTAGAAAACAAAATACCACAAGACCTTGTACTGTGTATACTTGTATTACTCTTATTAGACAACGTGTTGTTTTTGTTCATGTGTATTTATCCTCTCAATATATACTCATTTTGAAGTTGATACGT

Function

NR:

description
regulator of G-protein signaling 8-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604380.2 False 2429 mRNA 0.43 6 75671713 75698920
XM_021604382.2 True 2181 mRNA 0.42 6 75671713 75706466

Neighbor

gene id symbol gene type direction distance location
LOC110524580 rgs16 coding downstream 11041 75658532 ~ 75660672 (-)
LOC110524579 LOC106560296 coding downstream 47246 75613590 ~ 75624467 (-)
LOC110524577 LOC106560293 coding downstream 143163 75361138 ~ 75528550 (-)
LOC110524574 LOC106560290 coding downstream 338237 75299095 ~ 75333476 (-)
LOC110524573 LOC106560289 coding downstream 375105 75237541 ~ 75296608 (-)
LOC110523006 LOC106560358 coding upstream 33644 75740110 ~ 75743709 (-)
LOC110524582 LOC106560298 coding upstream 175763 75882229 ~ 75954489 (-)
LOC110524583 LOC106560299 coding upstream 582455 76288921 ~ 76324868 (-)
LOC110524587 uchl5 coding upstream 871777 76578243 ~ 76586678 (-)
glrx2 glrx2 coding upstream 880539 76587005 ~ 76588980 (-)
G439822 NA non-coding downstream 4548 75617663 ~ 75667165 (-)
G439821 NA non-coding downstream 35484 75616179 ~ 75636229 (-)
G439691 NA non-coding downstream 244542 75426944 ~ 75427171 (-)
G439690 NA non-coding downstream 245187 75426147 ~ 75426526 (-)
G439687 NA non-coding downstream 251009 75420385 ~ 75420704 (-)
G439870 NA non-coding upstream 7096 75713562 ~ 75713846 (-)
G439875 NA non-coding upstream 12367 75718833 ~ 75719041 (-)
G439887 NA non-coding upstream 29603 75736069 ~ 75736291 (-)
G439927 NA non-coding upstream 53532 75759998 ~ 75760201 (-)
G439929 LOC106581772 non-coding upstream 55030 75761496 ~ 75761708 (-)
G439788 LOC106560295 other downstream 96144 75571249 ~ 75575569 (-)
G439594 NA other downstream 406310 75263473 ~ 75265403 (-)
LOC110523004 NA other downstream 708017 74961377 ~ 74968484 (-)
G439002 NA other downstream 743916 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 2261374 73370439 ~ 73421683 (-)
G441168 glrx2 other upstream 879992 76586458 ~ 76590370 (-)
G441483 NA other upstream 1195916 76902382 ~ 76902771 (-)
G441630 NA other upstream 1307533 77013999 ~ 77021375 (-)
G442115 NA other upstream 1700276 77406742 ~ 77407135 (-)
G442381 rpl5 other upstream 1916833 77623299 ~ 77627214 (-)

Expression


Co-expression Network