LOC110523006 (LOC106560358)


Basic Information

Item Value
gene id LOC110523006
gene name LOC106560358
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75740110 ~ 75743709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601424.2
ATGGGGTTCTGCTGGGACTGGAGCAGGGAGTGTGGGCCTCACGGCAGAGGCTGGGTGGGCCCCACAGTGCTGCTCTGTATCTATGGCTTCTGCTCAATGATGAGGCCCTCTGAGCCTTTCCTCACGGACTACCTCACCGGGCCATACAAGAACCTCACCACCAAGCAGGTTACAAGGCAAGTGTTCCCAGTATGTGCGTATTCCAACCTCTTCCTACTCATCCCAGTCTTCTTGGTGACAGATATCCTGAGGTACAAGCCTGTCATCGTCCTCCAGGCACTCAACTATATTTTGGCATTTCTGCTGTTCATCTTCAGCTCTGGTGTGGTGTTGACTCAGTGCGCCCTCTTCATTTACAGTATGGGCACCGCAGCAGACGTGGCTTACTATTCCTATATCTACAGTGTTGTCCACCCCCAGTATTACCAGAGAGTGACTAGCTATGCCAGAGGGGCTGTGCTACTGGGCTACACAGCGGGAGCCATGTTGGGTCAACTCTTGGTGTCCCTGGGAGGGGTTTCCATCTACTGGCTCAATATCATTACCCTGGGATCCCTCTGTGTGGCTCTGTTGGCTGCCCTCCTCCTGCCCATGCCCCAGAGAAGCCTGGTCCTGGGGGGGACTCAGAATGATAACGGCCCATTCGAGGAGGTTGTGTCCAGTTCATGTGTATCCTGGGTTGTGTGGTGgctgaggaaggggaggaggaccgGGAGGGGGAAAATGAGAGCTCTGAAGAGGTTAGCGGTGGATTGTAAAGAGTGTTACTCCTCTGTGGCCGTGCTGTTCTTCTGTGTGTGGTCAGCCATGGGGAATTGCGGCTACCACCAGATCACAGGCTATGTGCAGCTCCTCTGGGCATCCAAACAGCCCCAATACAACTTCACAGAATACAATGGAGGGGTGGAGGCTGTCGCCACACTCTCAGGGGCGGCAGCCTCCATAGCTGTGGGTCATGTGTCTCTGGACTGGTCAGTGTGGGGAGAGCTGGTCCTGGGTGTGTTTACTGCTCTGACTGCTGGAGTTCTTTACCTGATGGACCTGACCAACAGCATCTGGATATGCTACGGCTGCTACGGACTCTTCAAAACCATCTACATGGCGCTCATCACCATCTGCACGTAA

Function

NR:

description
thiamine transporter 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601424.2 True 1125 mRNA 0.55 3 75740110 75743709

Neighbor

gene id symbol gene type direction distance location
rgs8 LOC106560297 coding downstream 33644 75671713 ~ 75706466 (-)
LOC110524580 rgs16 coding downstream 79438 75658532 ~ 75660672 (-)
LOC110524579 LOC106560296 coding downstream 115643 75613590 ~ 75624467 (-)
LOC110524577 LOC106560293 coding downstream 211560 75361138 ~ 75528550 (-)
LOC110524574 LOC106560290 coding downstream 406634 75299095 ~ 75333476 (-)
LOC110524582 LOC106560298 coding upstream 138520 75882229 ~ 75954489 (-)
LOC110524583 LOC106560299 coding upstream 545212 76288921 ~ 76324868 (-)
LOC110524587 uchl5 coding upstream 834534 76578243 ~ 76586678 (-)
glrx2 glrx2 coding upstream 843296 76587005 ~ 76588980 (-)
LOC110524596 barhl2 coding upstream 1248282 76991991 ~ 76996276 (-)
G439887 NA non-coding downstream 3819 75736069 ~ 75736291 (-)
G439875 NA non-coding downstream 21069 75718833 ~ 75719041 (-)
G439870 NA non-coding downstream 26264 75713562 ~ 75713846 (-)
G439822 NA non-coding downstream 72945 75617663 ~ 75667165 (-)
G439821 NA non-coding downstream 103881 75616179 ~ 75636229 (-)
G439927 NA non-coding upstream 16289 75759998 ~ 75760201 (-)
G439929 LOC106581772 non-coding upstream 17787 75761496 ~ 75761708 (-)
G439931 NA non-coding upstream 18063 75761772 ~ 75762028 (-)
G440040 NA non-coding upstream 91554 75835263 ~ 75835504 (-)
G440043 NA non-coding upstream 93066 75836775 ~ 75836976 (-)
G439788 LOC106560295 other downstream 164541 75571249 ~ 75575569 (-)
G439594 NA other downstream 474707 75263473 ~ 75265403 (-)
LOC110523004 NA other downstream 776414 74961377 ~ 74968484 (-)
G439002 NA other downstream 812313 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 2329771 73370439 ~ 73421683 (-)
G441168 glrx2 other upstream 842749 76586458 ~ 76590370 (-)
G441483 NA other upstream 1158673 76902382 ~ 76902771 (-)
G441630 NA other upstream 1270290 77013999 ~ 77021375 (-)
G442115 NA other upstream 1663033 77406742 ~ 77407135 (-)
G442381 rpl5 other upstream 1879590 77623299 ~ 77627214 (-)

Expression


Co-expression Network