LOC110524582 (LOC106560298)


Basic Information

Item Value
gene id LOC110524582
gene name LOC106560298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 75882229 ~ 75954489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604383.2
GCTCGAGAGCAAACCAGCGAATATCATTCTGATACATGCCACCACACTGACTGGAGTACAAGAGAGCATCGCACTCGAGTGCGCAGTGCTCCAAGTGCGTCTCAGTTAGAAAAGAGGAATTTTTTGGCGTTGAGAGGAAAGCAAGCACCTATTTATGCATTGTGTTTTTTCTTCTGAGGAACATCATAAACAACTTATTTTCCCTCggaaaaaaacaacagaaaattCACCTGGAAGGTGGCAATTGATTTTCCTCCAGCTGAATGAGCAGCGCGCCCTTGTTCGTCTCTGTCCGGTGCGCTGTTGCCTTCTCCTTCCTTTGGATTTTACATAATCGAGTGTAGCCGACCCACTGGAGGTATGATGCGGTAAAAGGGAGCTCCAGCCATTCAGGTGGATGTCGCTCAGTCACTATTTTTTTACTTCCCGTGGCCGTGATTTATAGCGTATGATCGTCTGACCCGGTAAACGGAGGTTTATCCAGTTGGGTCTCGATCCCATGCGAGTTCTCTCATGCATTGGGCTGATCACAACTTTGCGGTCCACTCAGAAGATCCGCTGGGGCGAAATTGTAACAATAACTTCACCGATAAGCTTTGTACCACACCGTTCGCAGAATCAGGACAAGGGGAGAGAAGTTTGGGGAGAATGAGGAGTCGTCGGGTGCGGGGGAAGCATGAGCGGCTGGTGTATCACTGTTAGACGGGTGGCTCTGATGGTTCTATGGGAGTGTACAGTTCTAAGCCTCCTACAGTGCTGGGTGGTAGGGTCGGCAGCCAGCAGGGCCGGGGCAGGAGCTGGGGCGTCTGCAGAGGCAGGGGGCTCCAGCGACGCCACGGGGCCCTTCGCCTGGCTCCTGTCTGACAAAGGGCCCTTTCATCACTCCCAGGAGTTTTCTGACTTTACGGAGCGCTACCAGCAAGGATTCACCACCAAGTACAAGATATACAGGGAGTTTGGCCGCTGGAAAGTGAACAGCCTGGCTCTAGAGAGACAGGACAACAATGGTCTGgccctgcccctggacccagagtTCCTCCAGACCATCAGGCACCTGGGCAGACGGCCCAGCCTCAGCTCCATTACAGACAGCATCATCAGGAAGTACGGAACACACTTCCTGCTCTCAGCCACCCTGGGGGgggaGGAGTCATTAATGATCTTTGTGGACAAGCGGAGGTTGAGTAGAACGGTGGAGACGAGAGAGGCCAACGGTACAGCCGTGACTCTAGAGGCCCTGCACCAACTGGCTGCCTCTTACTTCATCGACAGAGAGAGCACGCTGCGCAAGCTGCACCACATCCAGATAGCATCCACAGCCATTAAGGTGACCGAAACCAGGACGGGCCCTCTTGGATGCAGTAACTATGACAACCTGGACTCAGTCAGCTCTGTTCTGGTTCAGAGCCCTGAAAACAAGATTAATCTGCAAGGTCTCCAGGCCATCCTACCAGAGTACCTGAGGGTCAGGTTCGTCCAGGCTGCTCTGAGCTACATCGGCTGTAACGTGGAGGGTCAGTTTGTGTGCCGAGACAATGACTGTTGGTGCCGCTGCAGCCCAGGCTTCCCCCAGTGTAATTGCCCCGAAGTGGACCTGAGGGCCATGGAGGCCAGCCTACTGCACATCAGAGACACCTGGAACATGGCCAACCAGGACTTTGAAGAGTCGGAGGAGTTCCAGAACTTTTTGCGGAGACTCCCGATGTTCTACGCCCTCAACACATCTGCCATCCAGTACTTCTGGAAGATGGAGCCGGCCATCCACCAACGCTACAGACAGCTGGAGCTCAGCAGCAGACAGCTCATTGCCAAATCCCGACGAATCGTCAACAAACTCTTCACCCTCAGCAAGAGGTGTCGGACACAGCCGAAAGTCATTGTgctgagagagagGTCCTTCACCTACTGGCTGAACTTTATCTTGTCCATCATGTACTGCAGTGAGAACAACCACATAGGTTCATACCTGGAGGAGACAAGGAGCTGCTCTTGCCCTTATGAACACCCGTCCTGCCAGGGTGTCATACCCTGCACCATGGGCGAGGGCTCCTTCTGCGCCTCCTGCTCCTACGACAACCGCTCCCGCTGTGCCACATGCAATCCTGGGTACATGCTCAGCCAGGGGGTCTGCCGCAATGAGGTGCCGGACTCCACAGACCACTACATCGGCTTTGAGATGGACCTGCAGGACCTGGAGCTGAGATACCTGCTACAGAAGAAAGACAGCCGTATTGGCATCCATGGGCTCTTCGTCAGCAATGATGTCCGGCTCAACAACTGGTTTGACCCATCGTGGAGAAAGAGGATGCTGCTGACACTGAAGAGCAACAAGTACAAGTCCAACCACGTCCACATGCTCCTCGGGATGACCCTGCAGATCTGCCTTACTAAGAACAGCACCCTGGAGCCAGTGCTGTCTGTCTACATCAACCCCTTCGGGGGCAGTCACTCTGAGAGCTGGATCATGCCTATACACCAGAACAGCTACCCCGACTGGGAAAGGACTAAACTAGACATTCCCCTGGACTGTTACAACTGGACGTTGACTTTGGGCAACAAGTGGAAAACATTTTTTGAAACTGTCCACTTCTACTTGCGGAGCCGGATCAGTGCTCCGTTGCCCCAAGGGAACGGCTCAGTCTACTACGAACCTTTAGAGTTCCTGGAGCCTGGTAAGAACCTGGGCTACATGAAAATAAACAGCATCCAGGTGTTTGGCTACAGTATGCACTTTGACCCGGAAGCAATCCAGGACCTGATTCTGCAGCTGGACTACCCGTACACTCAGGGATCGCAGGACTCAGCCCTGCTGCAGTTGCTAGAGATCAGGGACCGGGTCAACAGACTGTCCCCTCCTGGACCTCAGCTCCTGGACCTCTTTTCCTGCCTGCTGCGCCACCGCCTGAAATTATCCACCACAGATGTTGTCCGAATACAGGCAGCGTTGCAGATTTTTTCTGCCAAACAGCCGAACTCCATGGAATACGAAACAACCAAATTATGTAGCTAATAAGGGGCCGGAGTCCAACTACACAGATGCTTGTGCTGCTATTACACTGACTTGATTACAGTTAAGAGCAATTTTGTAAGGCACCGAGGGACATTTCTTTGTTTTTATGATGTTGAGCGCTGTTTATTGGGATTCGTGTAAAATTATATATTTCTGGAAAGTGTGTGTCATACAAACACAAGGGGGCTTCACCATGCCCACTTTGCCTTTTTAAATGATGAGAAATTAGAAACAGAGTTGATTTCTGACCGTGATGGATATAAAAGATGTATCATCACTGATATGTTTCCCATAAATTGCACAGATCTCAATAATCTGTTAAAATGTGAAGCTTTTGCTGATAATTAAGTGTTATCTCAAGTGTGTTTGGTTTGACACCAGCATGGCTTTACTTAGGTCTTTCACTTTGTTATTGAACACACCATTTTTTATTATCATACTCTTCTGTTTAATCCCACTACACCCCATGTGTCCAGAGCTAAATGAGATGCTAAGGAAATCAAATGTTCCTTGTTTGTCATCAGTTTAAATTCCCACACAGGCTTTTCTATTTCACATATTTGTAAAATTAGAGTTATACAATACTTCAGACATGCAGAGATAAAACACCATACACGCAATGGCTAGTATGTttatgttacttttattttttataatgcaGTCGTTTGTGAACAGTTATGAAACAATGTCTATATGATGTATGAAAACATTCTGAATTTGCTAATTCACTAAATAAAAGTCATTTTTAtgtgccatc

Function

NR:

description
BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604383.2 True 3767 mRNA 0.50 8 75882229 75954489

Neighbor

gene id symbol gene type direction distance location
LOC110523006 LOC106560358 coding downstream 138520 75740110 ~ 75743709 (-)
rgs8 LOC106560297 coding downstream 175763 75671713 ~ 75706466 (-)
LOC110524580 rgs16 coding downstream 221557 75658532 ~ 75660672 (-)
LOC110524579 LOC106560296 coding downstream 257762 75613590 ~ 75624467 (-)
LOC110524577 LOC106560293 coding downstream 353679 75361138 ~ 75528550 (-)
LOC110524583 LOC106560299 coding upstream 334432 76288921 ~ 76324868 (-)
LOC110524587 uchl5 coding upstream 623754 76578243 ~ 76586678 (-)
glrx2 glrx2 coding upstream 632516 76587005 ~ 76588980 (-)
LOC110524596 barhl2 coding upstream 1037502 76991991 ~ 76996276 (-)
LOC110524597 LOC106560308 coding upstream 1227425 77181914 ~ 77215911 (-)
G440427 NA non-coding downstream 2275 75879642 ~ 75879954 (-)
G440081 NA non-coding downstream 21386 75860620 ~ 75860843 (-)
G440043 NA non-coding downstream 45253 75836775 ~ 75836976 (-)
G440040 NA non-coding downstream 46725 75835263 ~ 75835504 (-)
G439931 NA non-coding downstream 120201 75761772 ~ 75762028 (-)
G440430 NA non-coding upstream 370431 76324920 ~ 76342414 (-)
G440899 NA non-coding upstream 476610 76431099 ~ 76431450 (-)
G440950 NA non-coding upstream 514223 76468712 ~ 76468961 (-)
G440965 NA non-coding upstream 524335 76478824 ~ 76479026 (-)
G441179 LOC106560300 non-coding upstream 609216 76563705 ~ 76566462 (-)
G439788 LOC106560295 other downstream 306660 75571249 ~ 75575569 (-)
G439594 NA other downstream 616826 75263473 ~ 75265403 (-)
LOC110523004 NA other downstream 918533 74961377 ~ 74968484 (-)
G439002 NA other downstream 954432 74865259 ~ 74927797 (-)
LOC110524526 LOC106584218 other downstream 2471890 73370439 ~ 73421683 (-)
G441168 glrx2 other upstream 631969 76586458 ~ 76590370 (-)
G441483 NA other upstream 947893 76902382 ~ 76902771 (-)
G441630 NA other upstream 1059510 77013999 ~ 77021375 (-)
G442115 NA other upstream 1452253 77406742 ~ 77407135 (-)
G442381 rpl5 other upstream 1668810 77623299 ~ 77627214 (-)

Expression


Co-expression Network