LOC118964720 (LOC106576333)


Basic Information

Item Value
gene id LOC118964720
gene name LOC106576333
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76262294 ~ 76264534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979061.1
ATGGCCGCGCGTTTTACGGCCGCGCAGGTTCTAGAACAGATCTTGTCCAGCGTGGACCAAGAAGACTACTCGGAttgccaggaggaggaggaggaagaggtttcGGAAGACGAAGACGGGGAGGAATACAACCCCGAGCGCCGCGAGGTCGACGatgcctcttctccctcttccgaGGGAGAGCAGCCCGAGGAAGAGCCGCCCGAGGACGAGCACGAGGACGAGCGCGAGGACCGCGGCGAGGAAGAGATCTCCTCGGCCCCGGACCAACGGGAGCCGCCGTTGCTGTCGAAAAACGGCAAAATCGAGTGGTCCCCCGTGGCCTACGGCCGCCGCAGCCGCAGCCGCGGGGCCCTCGCCATCTGCCAGGTCGGGCCGGACCAGACTCCGGGCCCCACGGCCTACGCCGCGACACAGGCCCGCGACATCGCGTCCGCCTTCCACCTGTTTGTCACGCCGGCGATAGAAAGGATCATTGTGGAAATGACGAACCTGCACGGGGCCAGAAAATACGGCGACGGCTGGCGACCCATGGACGCCACGGACCTGCGCGCCTACGTAGGGCTGCTGATCCTAGCGGGCGTCTACAGGTCCCGGGGCGAGGCCGCGGCCAGCCTGTGGGACGCCGAGAGCGGCAGGACCGTGTTCCGAGCCACCATGCCGCTCAAGGTCTTTCACAGGTACTCGAGGCTGCTGCGATTCGACGACCGCCAGTCGAGACCCGCCAGACTCGCCACGGACAAACTCGCGGCCATACGGGAGGTCTGGGACCTGTGGGAGGCGCGGCTGCCGGCCCTCTACAACCCGGGGCCCGACGTGACGGTGGACGAGCAACTGGTCCCGTTCAGAGGCCGCTGTCCTTTCCGTCAGTACATCCCCAGCAAGCCGGCCAAATACGGCATCAAGTCGTGGGTGGCCTGCGACGCCAAGTCCAGCtacgcttggaagatgcaagtGTACACCGGCAAGGCGGCCGGCGGAGGCCCCgagaagaaccaggggatgcgCGTCGTCCTCGATCTGACAACGGGCCTGAGCGGTCGCAACGTCACCTGCGACAACTTCTTCACCTCCTACGACCTGGGCCAGCGGCTCCTCGAGAGGAACCTCACCATGGTGGGCACGGTGAGAAAGAACAAGGCCGAGCTCCCGCCCGCGCTGCTCCAGTCCAGGGGCAGACAGGTCCTGTCCTCCAGGTTCGCCTTCACGCCCACCGCCACTCTGGTGTCCTACCTGGCAAAGAGAAACAAGAACGTGCTACTCTTGAGCACGCTGCACACAGAGGGCCACGTCAGCGATCGCCGCGACAGGAAGCCGGCCCTCATCCTAGACTACAACTGCAACAAGGGCGGCGTGGACAACCTAGACAAGGTGGTGGGCACCTACAGCTGCAGAcggatgactgcccgctggcccctggtcgtCTTCCACAACATCCTCGACGTGTCCTCCTACAACGCCTTTGTCATATGGCGAGAGATCAAGCCCGACTGGATGCCTGGCAAGCGGAACAAGCGCAGGGTGTTCCtcgagcagctgggaaaggcactggTGAAGCCGCTGATCCAAAGAAGGCAGCATCTGCCCCGCACCGAAGCGGCGTCAGCCCTTGTCAAAGTCCTACAGAGTGCTACGGCGGCTGAGGCGGCCGCGGCCGCGGCGGCGGCTGAGGCGCCTCGTGATCAACAGCGCCAGGGCCCCGCCGCTGACACGGCCGCTGCCCCGCTCGTTGCCCCGGCCACCGGGGCAAGTAAGAGGAAGAGGTGTCAGCTCTGCCCACCCAAGAAGGACTCCAAGACACACACGGTGTGCTGCAGGTgtaagaaatacatctgcaaaggctGTTCACACGCCTACTGTCACACTTGCGCACATTGGGCCTTTAGCCAGGACGGGACAGGGTGA

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979061.1 True 1905 mRNA 0.65 2 76262294 76264534

Neighbor

gene id symbol gene type direction distance location
rgs4 LOC106560295 coding upstream 690146 75561178 ~ 75572148 (+)
LOC110524576 uhmk1 coding upstream 914398 75332453 ~ 75347896 (+)
LOC110524571 LOC106560285 coding upstream 1090473 75161317 ~ 75178287 (+)
LOC118964645 LOC106583873 coding upstream 1193549 75061181 ~ 75068745 (+)
LOC110524564 LOC106560280 coding upstream 1220917 75031789 ~ 75041377 (+)
LOC110524585 LOC106560359 coding downstream 274458 76538992 ~ 76541623 (+)
LOC110524586 LOC106560300 coding downstream 298955 76563489 ~ 76566464 (+)
LOC110524588 LOC106560302 coding downstream 309840 76574374 ~ 76576547 (+)
LOC110524593 LOC106560306 coding downstream 345435 76609969 ~ 76639478 (+)
LOC110524594 NA coding downstream 383086 76647620 ~ 76656898 (+)
G440102 NA non-coding upstream 388079 75873994 ~ 75874215 (+)
G440071 NA non-coding upstream 406837 75855253 ~ 75855457 (+)
G440068 NA non-coding upstream 407959 75854011 ~ 75854335 (+)
G440064 NA non-coding upstream 409527 75852510 ~ 75852767 (+)
G440045 NA non-coding upstream 423342 75838745 ~ 75838952 (+)
G440409 NA non-coding downstream 53188 76317722 ~ 76318721 (+)
G440795 NA non-coding downstream 100003 76364537 ~ 76364839 (+)
G440856 NA non-coding downstream 140671 76405205 ~ 76405445 (+)
G440877 NA non-coding downstream 153412 76417946 ~ 76418180 (+)
G440893 NA non-coding downstream 163788 76428322 ~ 76428588 (+)
G438719 NA other upstream 1485825 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 1492128 74729349 ~ 74770168 (+)
G437327 NA other upstream 2767210 73456301 ~ 73495084 (+)
G436588 NA other upstream 3266559 72995499 ~ 72995735 (+)
G441903 NA other downstream 1003678 77268212 ~ 77268766 (+)
G442273 NA other downstream 1293796 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 1981305 78245839 ~ 78288092 (+)
G445204 NA other downstream 3951944 80216478 ~ 80217090 (+)
G445211 NA other downstream 3970346 80234880 ~ 80235428 (+)

Expression


Co-expression Network