LOC110524585 (LOC106560359)


Basic Information

Item Value
gene id LOC110524585
gene name LOC106560359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76538992 ~ 76541623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604387.2
CCTCCCATCTGCCAATCCTCCTCCCAGCCCAACATGTGGATACTTGTGTGCTCTAGCCAGAGGGGAATAGCAAACAGGGGAATATAATAGGGAAGTCTAACTAGAACTGGGAAAAACATCAGAAGTTGTGAGTGCTGATCTTCAGGACGAACAAACTCTGCTTTTCAGGGATATTGTAATCATATGCATACATTATCAGCTGTTTCCGTCATCACTCTCTCATGTTAGATGGTCTGATATCAGGCAAAGGGGCATGTACAGGAAggCCCCCAAGCCCCCCATCGATGAAGTTGTTTCATGGCGACAATCGCTGAAAAAACTCCAGGAGTCTAAAACAGGGCAGCTGGCCTTCAGAGAGTTCCTGAGGACAGAGTACAGCGAGGAGAACATCTTGTTCTGGCTGGCCTGTGAGGAGTACAAGACCATCACCACCAGCAATGAGATAGCTATAGCAGCCAAAAGGATCTACGCAGAGTTTGTACATGTCGACGCTCCCAGACAGATAAACATCGACTGTGGGACCAGGCAGGAGATTACAAACAGCATGTCTCAGCCGACCCTGAGTTGCTTCGACAAGGCACAGAGACTGATATACAAGCTGATGAAAAAGGACTGTTATCCCAGATTCCTGAAATCTGAAATCTATCAAGGTCTTTTAGAACCATCAGAAGCCCGCTGAGGTTCCAGAACCAGGTGGAGAATAATAGCTGTTAACAACCAACAGTCTGTGGGCTGACAGGGATTCAACTCTCTCCGCTCTAACTAGCTGCCCATGTAAGTTCAGCATGGTTTAACTCTGGGCTGGAGCACAAAACACAGGCCCATGCTCTGTAGTCTCTCTAATAATAGTTCATCATCTAGCTCAGTGGCTCCTAATCTTATTCTGAGGTGTGGCCACCCAAAATATTTTCAACGTAAACATAAAGTGGAATACTCTCCATATAAATATGCTAATATTATAGATAATAGATATGATTACAAATGTTATACAGTACTGACTTTATTTAGAGTATAAAGCATTATGTATGTTTTATAACTTATTATTATCCATTGATTATCAATTGATCGTTACTTTTAACTGTAATAATTCATGGTATTCTCCTGATGTCTATGAAAACTAGGATATGTCATACCTGCCATTAAAGCCATGAAAAATAA
>XM_021604386.2
CTCCCATCTGCCAATCCTCCTCCCAGCCCAACATGTGGATACTTGTGTGCTCTAGCCAGAGGGGAATAGCAAACAGGGGAATATAATAGGGAAGTCTAACTAGAACTGGGAAAAACATCAGAAGTTGTGAGTGCTGATCTTCAGGACGAACAAACTCTGCTTTTCAGGGATATTGTAATCATATGCATACATTATCAGCTGTTTCCGTCATCACTCTCTCATGTTAGATGGTCTGATATCAGGCAAAGGGGCATGTACAGGAAgcttttttgttgtttttgtagggCCCCCAAGCCCCCCATCGATGAAGTTGTTTCATGGCGACAATCGCTGAAAAAACTCCAGGAGTCTAAAACAGGGCAGCTGGCCTTCAGAGAGTTCCTGAGGACAGAGTACAGCGAGGAGAACATCTTGTTCTGGCTGGCCTGTGAGGAGTACAAGACCATCACCACCAGCAATGAGATAGCTATAGCAGCCAAAAGGATCTACGCAGAGTTTGTACATGTCGACGCTCCCAGACAGATAAACATCGACTGTGGGACCAGGCAGGAGATTACAAACAGCATGTCTCAGCCGACCCTGAGTTGCTTCGACAAGGCACAGAGACTGATATACAAGCTGATGAAAAAGGACTGTTATCCCAGATTCCTGAAATCTGAAATCTATCAAGGTCTTTTAGAACCATCAGAAGCCCGCTGAGGTTCCAGAACCAGGTGGAGAATAATAGCTGTTAACAACCAACAGTCTGTGGGCTGACAGGGATTCAACTCTCTCCGCTCTAACTAGCTGCCCATGTAAGTTCAGCATGGTTTAACTCTGGGCTGGAGCACAAAACACAGGCCCATGCTCTGTAGTCTCTCTAATAATAGTTCATCATCTAGCTCAGTGGCTCCTAATCTTATTCTGAGGTGTGGCCACCCAAAATATTTTCAACGTAAACATAAAGTGGAATACTCTCCATATAAATATGCTAATATTATAGATAATAGATATGATTACAAATGTTATACAGTACTGACTTTATTTAGAGTATAAAGCATTATGTATGTTTTATAACTTATTATTATCCATTGATTATCAATTGATCGTTACTTTTAACTGTAATAATTCATGGTATTCTCCTGATGTCTATGAAAACTAGGATATGTCATACCTGCCATTAAAGCCATGAAAAATAA

Function

NR:

description
regulator of G-protein signaling 21-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604387.2 False 1158 mRNA 0.42 5 76538992 76541623
XM_021604386.2 True 1178 mRNA 0.42 5 76538993 76541623

Neighbor

gene id symbol gene type direction distance location
LOC118964720 LOC106576333 coding upstream 274458 76262294 ~ 76264534 (+)
rgs4 LOC106560295 coding upstream 966844 75561178 ~ 75572148 (+)
LOC110524576 uhmk1 coding upstream 1191096 75332453 ~ 75347896 (+)
LOC110524571 LOC106560285 coding upstream 1367171 75161317 ~ 75178287 (+)
LOC118964645 LOC106583873 coding upstream 1470247 75061181 ~ 75068745 (+)
LOC110524586 LOC106560300 coding downstream 21866 76563489 ~ 76566464 (+)
LOC110524588 LOC106560302 coding downstream 32751 76574374 ~ 76576547 (+)
LOC110524593 LOC106560306 coding downstream 68346 76609969 ~ 76639478 (+)
LOC110524594 NA coding downstream 105997 76647620 ~ 76656898 (+)
LOC110524592 LOC106560305 coding downstream 122241 76663864 ~ 76684035 (+)
G440955 NA non-coding upstream 66939 76471833 ~ 76472053 (+)
G440951 NA non-coding upstream 69280 76469483 ~ 76469712 (+)
G440931 NA non-coding upstream 85604 76453109 ~ 76453388 (+)
G440930 NA non-coding upstream 86041 76452286 ~ 76452951 (+)
G440929 NA non-coding upstream 86760 76451855 ~ 76452232 (+)
G441106 NA non-coding downstream 149375 76690998 ~ 76691326 (+)
G441114 NA non-coding downstream 155596 76697219 ~ 76697420 (+)
G441115 NA non-coding downstream 155834 76697457 ~ 76697660 (+)
G441116 NA non-coding downstream 156711 76698334 ~ 76698605 (+)
G441110 NA non-coding downstream 162544 76704167 ~ 76704526 (+)
G438719 NA other upstream 1762523 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 1768826 74729349 ~ 74770168 (+)
G437327 NA other upstream 3043908 73456301 ~ 73495084 (+)
G436588 NA other upstream 3543257 72995499 ~ 72995735 (+)
G441903 NA other downstream 726589 77268212 ~ 77268766 (+)
G442273 NA other downstream 1016707 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 1704216 78245839 ~ 78288092 (+)
G445204 NA other downstream 3674855 80216478 ~ 80217090 (+)
G445211 NA other downstream 3693257 80234880 ~ 80235428 (+)

Expression


Co-expression Network