LOC110524586 (LOC106560300)


Basic Information

Item Value
gene id LOC110524586
gene name LOC106560300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 76563489 ~ 76566464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604388.2
gagagagggggagagagagtgtgtcgcaaaaagagagagcgtgtgtcacaggaagagagaaagagagcgtggAGGCTTCCTCTCTCGCTACGGTTTGCTGGGCTGGGTCTGATGTTTCAGTGTTTCACCATCCAGCCCCTAAGCAACGGGGCGCCCTGCATATAAGGCCTGAAGTGGGGGGAGACCCCTCCATACAGAGAGTGATCCATCGCAGCATGAGCAGCAccaggagacagagagtgtggAGTTAAAACATGCCCAGCCTAATCATCACAGAGACACTGACACAAACACAGCACTTCAATATGGAGCAGGACGACAGGGGGAGGAACAAGAACCTGGGAAAGAACTTTATTTGCCGACTGCAATGCATGTTCTCACACTCCACATCTGAGAGCAGGCTAAGTTTAGAAGATACCCAACAATGGTCTCAGTCACTGGAGAGACTCCTTGAGTCTAAATATGGACTGGCCACCTTCAGAACCTTTCTGAAGTCTGAATTCAGCGATGAGAACATTGAGTTCTGGCTGACGTGTGAGGAGTACAAGAAAATCAAGTCATCGTTCAGAATGTCATCGAAGGCAAAGAAAATCTATGAGCAGTTCATAAAGGCTGAGGCTCCTAAAGAGATTAACATTGACTACTACACAAGGGAGCAGATCAAGAGTGCTGTGAAGACTCCTAACCTCCAATGCTTCGACGATGCCCAGAAGATTGTCTATGGGCTGATGGAGAGAGATTCGTACCCTCGCTTCCTGCGCTCAGACATTTACAGATCCCTCCTGGAGTCCCTCGCCGCTGACGCCGTCAAGggatgataggagaggagaagatgacaGGAGAACATGAAAACAGTAACTGGAATGTTTGGGCTTCTACAGGATGGAAGGCTGACCCAGCACAGAGAGACTGGCAGGCCATGCCCTACAAAACATGGTTCCCACAATGCAGGACCACACCCTGAAACACTCTGCTAACAGCATTAGCCAAGAGAAAAATAAAGAAGCAAAGACAGAAGGAAAAGCAGAGAGGATATGGGGAACTCTACGGTGATGCGTGTTTGACCTGGATACTGCTGTCCTATCAGTGACTCTGGGAGTGACGTGTCGTATCATAAGTGATCAGATCGTCTTTGACAGTGAATGAATCACATAGTGAATGACGATTGAACTGAAACACAACGTCAGAGAACCATGCAGTCCCCACTCAACCGGAGGTGCTTCCTGTCTTGATAAAGACAGAGAAgagtgtgtccgtgtgtgcgcgcgtgtgtgtgtgtgtctgtgtgcgcgtaaCAGGAAGCCTATGATACTGTGATAAGACATGAGATGCAGGGTGGACTTTCACTAGAGTACTAACCTACGTGGTCAGGAGGAATGTAATGAAGGAAGGAGCATGTATTCAGCGGATACCGGCCAAACAGAATATACTCTCCTTTACACTATGAATGTTTAGTCTCTAAAATCAATCAAGTTTTGTGAAAGGCATTTTGATATTTACACTTGTAAGGCAGTTAAAGACTTCTTTCACTGTCTATCTTTTAAGAATGACCTATTGAGAAGTATAGGTTAAGTTGTGCAATTGTAGAGAGAAGAATAGTCTATGTCCAACTTTGTATATTGAACTTAACTCCTACTTATTTGATACAGAATGTTTCTGATTGCTTACTGAGCTAGAATGTTTATACATTCAGATTTGCATGTTGTACTATTTATAACACACAGTCACTGTCTGGATGCTGACTTTTGCAATGcttgttaaaaaaaaagttatgaTTATGTAGGATGACATTAAATTATTTGCAGACAA
>XM_021604389.2
gagagagggggagagagagtgtgtcgcaaaaagagagagcgtgtgtcacaggaagagagaaagagagcgtggAGGCTTCCTCTCTCGCTACGGTTTGCTGGGCTGGGTCTGATGTTTCAGTGTTTCACCATCCAGCCCCTAAGCAACGGGGCGCCCTGCATATAAGGCCTGAAGTGGGGGGAGACCCCTCCATACAGAGAGTGATCCATCGCAGCATGAGCAGCAccaggagacagagagtgtggAGTTAAAACATGCCCAGCCTAATCATCACAGAGACACTGACACAAACACAGCACTTCAATATGGAGCAGGACGACAGGGGGAGGAACAAGAACCTGGGAAAGAACTTTATTTGCCGACTGCAATGCATGTTCTCACACTCCACATCTGAGAGGCTAAGTTTAGAAGATACCCAACAATGGTCTCAGTCACTGGAGAGACTCCTTGAGTCTAAATATGGACTGGCCACCTTCAGAACCTTTCTGAAGTCTGAATTCAGCGATGAGAACATTGAGTTCTGGCTGACGTGTGAGGAGTACAAGAAAATCAAGTCATCGTTCAGAATGTCATCGAAGGCAAAGAAAATCTATGAGCAGTTCATAAAGGCTGAGGCTCCTAAAGAGATTAACATTGACTACTACACAAGGGAGCAGATCAAGAGTGCTGTGAAGACTCCTAACCTCCAATGCTTCGACGATGCCCAGAAGATTGTCTATGGGCTGATGGAGAGAGATTCGTACCCTCGCTTCCTGCGCTCAGACATTTACAGATCCCTCCTGGAGTCCCTCGCCGCTGACGCCGTCAAGggatgataggagaggagaagatgacaGGAGAACATGAAAACAGTAACTGGAATGTTTGGGCTTCTACAGGATGGAAGGCTGACCCAGCACAGAGAGACTGGCAGGCCATGCCCTACAAAACATGGTTCCCACAATGCAGGACCACACCCTGAAACACTCTGCTAACAGCATTAGCCAAGAGAAAAATAAAGAAGCAAAGACAGAAGGAAAAGCAGAGAGGATATGGGGAACTCTACGGTGATGCGTGTTTGACCTGGATACTGCTGTCCTATCAGTGACTCTGGGAGTGACGTGTCGTATCATAAGTGATCAGATCGTCTTTGACAGTGAATGAATCACATAGTGAATGACGATTGAACTGAAACACAACGTCAGAGAACCATGCAGTCCCCACTCAACCGGAGGTGCTTCCTGTCTTGATAAAGACAGAGAAgagtgtgtccgtgtgtgcgcgcgtgtgtgtgtgtgtctgtgtgcgcgtaaCAGGAAGCCTATGATACTGTGATAAGACATGAGATGCAGGGTGGACTTTCACTAGAGTACTAACCTACGTGGTCAGGAGGAATGTAATGAAGGAAGGAGCATGTATTCAGCGGATACCGGCCAAACAGAATATACTCTCCTTTACACTATGAATGTTTAGTCTCTAAAATCAATCAAGTTTTGTGAAAGGCATTTTGATATTTACACTTGTAAGGCAGTTAAAGACTTCTTTCACTGTCTATCTTTTAAGAATGACCTATTGAGAAGTATAGGTTAAGTTGTGCAATTGTAGAGAGAAGAATAGTCTATGTCCAACTTTGTATATTGAACTTAACTCCTACTTATTTGATACAGAATGTTTCTGATTGCTTACTGAGCTAGAATGTTTATACATTCAGATTTGCATGTTGTACTATTTATAACACACAGTCACTGTCTGGATGCTGACTTTTGCAATGcttgttaaaaaaaaagttatgaTTATGTAGGATGACATTAAATTATTTGCAGACAA

Function

NR:

description
regulator of G-protein signaling 8-like isoform X2

GO: NA

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604388.2 False 1809 mRNA 0.45 5 76563489 76566464
XM_021604389.2 True 1806 mRNA 0.45 5 76563489 76566464

Neighbor

gene id symbol gene type direction distance location
LOC110524585 LOC106560359 coding upstream 21866 76538992 ~ 76541623 (+)
LOC118964720 LOC106576333 coding upstream 298955 76262294 ~ 76264534 (+)
rgs4 LOC106560295 coding upstream 991341 75561178 ~ 75572148 (+)
LOC110524576 uhmk1 coding upstream 1215593 75332453 ~ 75347896 (+)
LOC110524571 LOC106560285 coding upstream 1391668 75161317 ~ 75178287 (+)
LOC110524588 LOC106560302 coding downstream 7910 76574374 ~ 76576547 (+)
LOC110524593 LOC106560306 coding downstream 43505 76609969 ~ 76639478 (+)
LOC110524594 NA coding downstream 81156 76647620 ~ 76656898 (+)
LOC110524592 LOC106560305 coding downstream 97400 76663864 ~ 76684035 (+)
LOC110524591 LOC106560304 coding downstream 127066 76693530 ~ 76704137 (+)
G440955 NA non-coding upstream 91436 76471833 ~ 76472053 (+)
G440951 NA non-coding upstream 93777 76469483 ~ 76469712 (+)
G440931 NA non-coding upstream 110101 76453109 ~ 76453388 (+)
G440930 NA non-coding upstream 110538 76452286 ~ 76452951 (+)
G440929 NA non-coding upstream 111257 76451855 ~ 76452232 (+)
G441106 NA non-coding downstream 124534 76690998 ~ 76691326 (+)
G441114 NA non-coding downstream 130755 76697219 ~ 76697420 (+)
G441115 NA non-coding downstream 130993 76697457 ~ 76697660 (+)
G441116 NA non-coding downstream 131870 76698334 ~ 76698605 (+)
G441110 NA non-coding downstream 137703 76704167 ~ 76704526 (+)
G438719 NA other upstream 1787020 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 1793323 74729349 ~ 74770168 (+)
G437327 NA other upstream 3068405 73456301 ~ 73495084 (+)
G436588 NA other upstream 3567754 72995499 ~ 72995735 (+)
G441903 NA other downstream 701748 77268212 ~ 77268766 (+)
G442273 NA other downstream 991866 77558330 ~ 77583227 (+)
LOC110524622 LOC106560333 other downstream 1679375 78245839 ~ 78288092 (+)
G445204 NA other downstream 3650014 80216478 ~ 80217090 (+)
G445211 NA other downstream 3668416 80234880 ~ 80235428 (+)

Expression


Co-expression Network