LOC110524600 (tgfbr3)


Basic Information

Item Value
gene id LOC110524600
gene name tgfbr3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77276905 ~ 77402910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604412.2
CCAACCCTCAAAATGTAGTGCCTCGTGAAAACGGAGATAGGTATTTAAAACGTTTAAGCAATAGTAGTGGACTCACTATTCATAAACTCGGCAATTTCTGTAACCTGACATCTAACGTTGTTTTCCAAGGACGTGGAGGGGGTTTTCCAGGAAAGGATACATATCGCATCCATTCGAACCACTGCAAGGCAAGCAAGCTACAATTTACAACAAAGTTTACTTTGAGATTCCTGGATATTCTGCATGCAGGAGATCCTGTGAGGTTTctctctactgactgactgtgtggtgGTAGAAGGGTTGTCCTTGTGAAGAACCAGGAGGAAGGAAGGCCGTCCAGTGGATACATCCTGTCCTCTTCTGGATAAGCTGTAGGCCAGTTCTACTACAGTATAACTGCAGCATTATGATGCCAGACAGACCCATTTTACCCCTGTTTCTCCTGGCGTTCTGCTGCTCAGCATTTGCAGGTCCGTTGTCTCGTAGCCCGTGTGAGCTGCTGCCAATAGGTGTAGGCCACCCGGTGCAGGCTCTGCTGAAGAGCTTCACGGCCCTGTCAGGCTGTGCCTCCCGTGGAACCACGGGTCTACCACAGGAGGTTCACATCATCAACCTGAGGGGCAGCAGCCCTGAGGGGTCAAACAGCACACATCCAGAGGTGGAGCTGCATCTGAAGCCCATCCAGTCCCTGCTGGTTCACCAGAAGCCCCTGGTGTTTGTGCTGAACTCCCCCCAGCCTGTGGTCTGGgacatcaggacagagaaacTAGCCCTAGGCATTAAACACATCTTCCATgtaTCTGGGGGATCTGATGTCCACTTCCCTCCAGGGAACTTCTCCCTCCACTGTCATGTTCAGAAGGAGGTACTTCCCCATGGCAACGAGCACCTCCTCAACTGGGCCACCAAGAAGTACAGAGCCGTTACCTCCTTCTCCGAACTCAAGATTGCCCTGGACATCTACATCAAAGTGGGAGAAGACCCAGTGTTCTCCGATACTTGCAAGATCGACAACAAGTTCCTCTCTCTGAACTACCTTGCTGGCTACGTAGAGTCCCAGGCCTCTAAAGGCTGTGTCCTGTCTGGACCAGACCAGGACCAAGAGGTCCACATCATCGAGCTGCAAGCACCCAACTCTAGTAGTGCGTTCCAGGTGGATGTGATCGTTGATCTGAGGCCGTTGGGGGCAGATGTTCTGTTGCCTCGTGACATCGTGCTGCTGCTGAAGTGTCAGAAGTCTGTCAACTGGGTCATCAAGGCTCACAGCATCAGCGGGAAACTGAATGTAGTGACGCCAGATACCATCAGTCTGAGCCCCAACACAGAGAGGCTGATGGAGGTGTCTAGGACCCCTAAGCACCACCTCCCGTCTGGCTCTCAGGCCCTGATCAAGTGGGCAGAGGATCATGGTTACAGACCGGTCACCACCTACACCCACACACCTGTAGCTAACACCTTTAACCTGAGGCTCAGGGAGCCAGATGTGGTGGATCCCCTGGATTCCATGTTCCCTCCAGAACTCTCCATCTTACGGGACACCAACCCCATTCTCTCTGGTGGTCAGGGGGGTGCTGCCCCACACTCCAGTGGCCTGCCCTTCACCTTCCCCTTGCCCCCGCTCATGGAGCAGGGCCTGCACTACCtgtccctgcccccccccctggATGACCGGCCTTGGCTGGGAGGGGAGCTGGGTGGGGAGCCTGAGGAGCAGCAGGGGACCCTCAGTGTTGGTCTCAGTGTTCAGTGTGAGGAGAGCAGGATAGTGGTCTGCATCGACCGAGAGAGTCTGCAGGCCAACGGTTACGCTAATGTCAACCTGACTCTTCAAGACCCAGAATGCAAAGCAACGGTCAACTCCACCCACTACACGTTGGTGACCCCATTGGAGGGCTGTCAGACCACCAAGTACCCCATGCACCCCGGTCCTATGGTCCTCTACATCAACTCTATCCTGATAAGTCACGATGAGCCTAAGGATGGGAGTGGTGTTCCCCTGGATTACGATGATCTAGAGTCTGGAGACGTGACATTCCCTGGGGAGACAGAGGCACTGGAGAGGGCTGCTTTCCTGGAGCACACCACGGGGCCTGATCACAGGTCCTCCATTCTGTTCAACTGCACCTACAGGAAGAACCAGGACACTCTAGGAGGATCAGGATCATCAGGATCGTTCCCTCGTATTGCCCCAGCAGCAAAGGAACTGCTCAGCACCGACGTCATGGTTAACATGGAGCTGTACAACACCCATCTCTTCCGTTATCCGTCTACCCAGGCCTTCCATACCGTCTCCAAAAATAAACAGGTCTTCGTAGAGATTGGAGCCTTCAAAGTCGACCCAGATCTTGGCTTCATGATCCAGACCTGCTTCATCTCTGCCAACTCAAACCCCAACATCGCGTCAGACTATACCCTGATCGAGAATATCTGCCCTACAGACGACACCGTCAAATACTACAGTCAGAGAGACCTACCTATCTCCCACTCCCAGACCGACAACAAGAGGTTCAGCTTCACCTTCAACTCACACTTCAATGAATCATTGCTCTTCCTGCACTGTGAAATGTCCGTTTGCTCTAAGAGACCCCACAATAACCAGGGACTGGCAATGTGTATCCAACCGAACGAGGCTTGTACGTCTGTCAACGGAGAGATCATCCTAGCCATGATGATGAACACCAGGACTTCTACCAAGACCCTAGTGGTGGTAGATGAAcatgacacagaggaggaggaacctTTTCATCCCACCCTCACGGCATCACAAAACCCTGCTGACCCCCTAGGGGAAAacatCTTGTATGTGTTGGACACTCCAACCGTGGTTGGGATCGCCTTCGCTGCATTTGTGATCGGTGCCCTGTTGACCGGAGCCCTGTGGTTCATCTACTCTCATACAGGTGATACAGCTGGACAACAGCAGCCCCTGAAGCCCCAACCCCCACCCTCAGAGAACAGCAGTGCGGCCCACAGTATTGGCAGCACACAAAGCACGCCCTGTTCAAGCAGCAGTACAGCATAGCCCAGAGGCCAGGCCAAGGCCATTGGACTGGAGCCCGACGGGGAGCACCCTACCCCCCTGCAGGGCTACAGGAAGGGCTACACAGGTCACAGAGAACTGGGTTTGTTGACACTTGTTTCCCCTCTGGATGAAAGGAATTATTTTGGGTTGCTTTGTGAAAACAAAGAAGAAGGATGATTTACTAAAGAAGAAAATAAGAATAAAAGGATTGTTTTTTTAAAGGATTTTGTAAGATACTAAAAAACAATAAGACCCGTTAATGTCCCTGGTTAATTCAATTTATTTCAACACAAGTCATTAAGGCTGTGTGACAGAACtgctgtactacaaggactggtCTGAGAGCAAAACAGTACTAGGGTTGTTCCACCAATtcagtgccttttgagaagtgtaacctGGTCCAAAAATAGttgatttcacctcattttaacattctgtcataacgAGCACATGTTCAACATCATAAAACACACATTTTGTAATCTCAGgaggttaaatttaaaaaatgactatagtaaatgccaaataaagtaacaggattgacaaaacaccaaaaatatccaaaaagagtagaaccagctaaCCTGCTTTTCACTATGATTTACTTAttggatgttcaatgtttcttttgaaaaaaatattttaaaaggaaTAGTTTTACCACATTACTACGAGAGTTgagttcacgtaacagggttgaccataaaatgagggacagacgtacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttattattttctacattg
>XM_021604413.2
CCAACCCTCAAAATGTAGTGCCTCGTGAAAACGGAGATAGGTATTTAAAACGTTTAAGCAATAGTAGTGGACTCACTATTCATAAACTCGGCAATTTCTGTAACCTGACATCTAACGTTGTTTTCCAAGGACGTGGAGGGGGTTTTCCAGGAAAGGATACATATCGCATCCATTCGAACCACTGCAAGGCAAGCAAGCTACAATTTACAACAAAGTTTACTTTGAGATTCCTGGATATTCTGCATGGAGATCCTGTGAGGTTTctctctactgactgactgtgtggtgGTAGAAGGGTTGTCCTTGTGAAGAACCAGGAGGAAGGAAGGCCGTCCAGTGGATACATCCTGTCCTCTTCTGGATAAGCTGTAGGCCAGTTCTACTACAGTATAACTGCAGCATTATGATGCCAGACAGACCCATTTTACCCCTGTTTCTCCTGGCGTTCTGCTGCTCAGCATTTGCAGGTCCGTTGTCTCGTAGCCCGTGTGAGCTGCTGCCAATAGGTGTAGGCCACCCGGTGCAGGCTCTGCTGAAGAGCTTCACGGCCCTGTCAGGCTGTGCCTCCCGTGGAACCACGGGTCTACCACAGGAGGTTCACATCATCAACCTGAGGGGCAGCAGCCCTGAGGGGTCAAACAGCACACATCCAGAGGTGGAGCTGCATCTGAAGCCCATCCAGTCCCTGCTGGTTCACCAGAAGCCCCTGGTGTTTGTGCTGAACTCCCCCCAGCCTGTGGTCTGGgacatcaggacagagaaacTAGCCCTAGGCATTAAACACATCTTCCATgtaTCTGGGGGATCTGATGTCCACTTCCCTCCAGGGAACTTCTCCCTCCACTGTCATGTTCAGAAGGAGGTACTTCCCCATGGCAACGAGCACCTCCTCAACTGGGCCACCAAGAAGTACAGAGCCGTTACCTCCTTCTCCGAACTCAAGATTGCCCTGGACATCTACATCAAAGTGGGAGAAGACCCAGTGTTCTCCGATACTTGCAAGATCGACAACAAGTTCCTCTCTCTGAACTACCTTGCTGGCTACGTAGAGTCCCAGGCCTCTAAAGGCTGTGTCCTGTCTGGACCAGACCAGGACCAAGAGGTCCACATCATCGAGCTGCAAGCACCCAACTCTAGTAGTGCGTTCCAGGTGGATGTGATCGTTGATCTGAGGCCGTTGGGGGCAGATGTTCTGTTGCCTCGTGACATCGTGCTGCTGCTGAAGTGTCAGAAGTCTGTCAACTGGGTCATCAAGGCTCACAGCATCAGCGGGAAACTGAATGTAGTGACGCCAGATACCATCAGTCTGAGCCCCAACACAGAGAGGCTGATGGAGGTGTCTAGGACCCCTAAGCACCACCTCCCGTCTGGCTCTCAGGCCCTGATCAAGTGGGCAGAGGATCATGGTTACAGACCGGTCACCACCTACACCCACACACCTGTAGCTAACACCTTTAACCTGAGGCTCAGGGAGCCAGATGTGGTGGATCCCCTGGATTCCATGTTCCCTCCAGAACTCTCCATCTTACGGGACACCAACCCCATTCTCTCTGGTGGTCAGGGGGGTGCTGCCCCACACTCCAGTGGCCTGCCCTTCACCTTCCCCTTGCCCCCGCTCATGGAGCAGGGCCTGCACTACCtgtccctgcccccccccctggATGACCGGCCTTGGCTGGGAGGGGAGCTGGGTGGGGAGCCTGAGGAGCAGCAGGGGACCCTCAGTGTTGGTCTCAGTGTTCAGTGTGAGGAGAGCAGGATAGTGGTCTGCATCGACCGAGAGAGTCTGCAGGCCAACGGTTACGCTAATGTCAACCTGACTCTTCAAGACCCAGAATGCAAAGCAACGGTCAACTCCACCCACTACACGTTGGTGACCCCATTGGAGGGCTGTCAGACCACCAAGTACCCCATGCACCCCGGTCCTATGGTCCTCTACATCAACTCTATCCTGATAAGTCACGATGAGCCTAAGGATGGGAGTGGTGTTCCCCTGGATTACGATGATCTAGAGTCTGGAGACGTGACATTCCCTGGGGAGACAGAGGCACTGGAGAGGGCTGCTTTCCTGGAGCACACCACGGGGCCTGATCACAGGTCCTCCATTCTGTTCAACTGCACCTACAGGAAGAACCAGGACACTCTAGGAGGATCAGGATCATCAGGATCGTTCCCTCGTATTGCCCCAGCAGCAAAGGAACTGCTCAGCACCGACGTCATGGTTAACATGGAGCTGTACAACACCCATCTCTTCCGTTATCCGTCTACCCAGGCCTTCCATACCGTCTCCAAAAATAAACAGGTCTTCGTAGAGATTGGAGCCTTCAAAGTCGACCCAGATCTTGGCTTCATGATCCAGACCTGCTTCATCTCTGCCAACTCAAACCCCAACATCGCGTCAGACTATACCCTGATCGAGAATATCTGCCCTACAGACGACACCGTCAAATACTACAGTCAGAGAGACCTACCTATCTCCCACTCCCAGACCGACAACAAGAGGTTCAGCTTCACCTTCAACTCACACTTCAATGAATCATTGCTCTTCCTGCACTGTGAAATGTCCGTTTGCTCTAAGAGACCCCACAATAACCAGGGACTGGCAATGTGTATCCAACCGAACGAGGCTTGTACGTCTGTCAACGGAGAGATCATCCTAGCCATGATGATGAACACCAGGACTTCTACCAAGACCCTAGTGGTGGTAGATGAAcatgacacagaggaggaggaacctTTTCATCCCACCCTCACGGCATCACAAAACCCTGCTGACCCCCTAGGGGAAAacatCTTGTATGTGTTGGACACTCCAACCGTGGTTGGGATCGCCTTCGCTGCATTTGTGATCGGTGCCCTGTTGACCGGAGCCCTGTGGTTCATCTACTCTCATACAGGTGATACAGCTGGACAACAGCAGCCCCTGAAGCCCCAACCCCCACCCTCAGAGAACAGCAGTGCGGCCCACAGTATTGGCAGCACACAAAGCACGCCCTGTTCAAGCAGCAGTACAGCATAGCCCAGAGGCCAGGCCAAGGCCATTGGACTGGAGCCCGACGGGGAGCACCCTACCCCCCTGCAGGGCTACAGGAAGGGCTACACAGGTCACAGAGAACTGGGTTTGTTGACACTTGTTTCCCCTCTGGATGAAAGGAATTATTTTGGGTTGCTTTGTGAAAACAAAGAAGAAGGATGATTTACTAAAGAAGAAAATAAGAATAAAAGGATTGTTTTTTTAAAGGATTTTGTAAGATACTAAAAAACAATAAGACCCGTTAATGTCCCTGGTTAATTCAATTTATTTCAACACAAGTCATTAAGGCTGTGTGACAGAACtgctgtactacaaggactggtCTGAGAGCAAAACAGTACTAGGGTTGTTCCACCAATtcagtgccttttgagaagtgtaacctGGTCCAAAAATAGttgatttcacctcattttaacattctgtcataacgAGCACATGTTCAACATCATAAAACACACATTTTGTAATCTCAGgaggttaaatttaaaaaatgactatagtaaatgccaaataaagtaacaggattgacaaaacaccaaaaatatccaaaaagagtagaaccagctaaCCTGCTTTTCACTATGATTTACTTAttggatgttcaatgtttcttttgaaaaaaatattttaaaaggaaTAGTTTTACCACATTACTACGAGAGTTgagttcacgtaacagggttgaccataaaatgagggacagacgtacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttttattattttctacattg

Function

symbol description
tgfbr3 Predicted to enable glycosaminoglycan binding activity; transforming growth factor beta-activated receptor activity; and type II transforming growth factor beta receptor binding activity. Predicted to contribute to transforming growth factor beta binding activity. Acts upstream of or within somite development and sprouting angiogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Is expressed in notochord; somite; spinal cord; and vasculature. Orthologous to human TGFBR3 (transforming growth factor beta receptor 3).

NR:

description
transforming growth factor beta receptor type 3-like

GO: NA

KEGG:

id description
K05843 TGFBR3; transforming growth factor, beta receptor III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604412.2 False 3821 mRNA 0.50 17 77276905 77402910
XM_021604413.2 True 3818 mRNA 0.50 17 77276905 77402910

Neighbor

gene id symbol gene type direction distance location
LOC110524597 LOC106560308 coding downstream 60994 77181914 ~ 77215911 (-)
LOC110524596 barhl2 coding downstream 280629 76991991 ~ 76996276 (-)
glrx2 glrx2 coding downstream 687925 76587005 ~ 76588980 (-)
LOC110524587 uchl5 coding downstream 690227 76578243 ~ 76586678 (-)
LOC110524583 LOC106560299 coding downstream 952037 76288921 ~ 76324868 (-)
LOC110524605 LOC106560313 coding upstream 112208 77515118 ~ 77527861 (-)
LOC110524607 LOC106560317 coding upstream 145950 77548860 ~ 77556868 (-)
LOC110524608 evi5 coding upstream 155412 77558322 ~ 77617711 (-)
LOC110524609 fam69a coding upstream 224547 77627457 ~ 77642149 (-)
gadd45ab LOC106560326 coding upstream 468855 77871765 ~ 77874843 (-)
G442023 NA non-coding downstream 857 77275845 ~ 77276048 (-)
G442022 NA non-coding downstream 2908 77272968 ~ 77273997 (-)
G442021 NA non-coding downstream 4156 77269860 ~ 77272749 (-)
G442013 NA non-coding downstream 20929 77255726 ~ 77255976 (-)
G442012 NA non-coding downstream 21373 77255183 ~ 77255532 (-)
G442116 NA non-coding upstream 7377 77410287 ~ 77410653 (-)
G442137 NA non-coding upstream 19310 77422220 ~ 77422477 (-)
G442141 NA non-coding upstream 20442 77423352 ~ 77423695 (-)
G442173 NA non-coding upstream 52002 77454912 ~ 77455575 (-)
G442191 NA non-coding upstream 66708 77469618 ~ 77469838 (-)
G441630 NA other downstream 255530 77013999 ~ 77021375 (-)
G441483 NA other downstream 374134 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 686535 76586458 ~ 76590370 (-)
G439788 LOC106560295 other downstream 1701336 75571249 ~ 75575569 (-)
G439594 NA other downstream 2011502 75263473 ~ 75265403 (-)
G442115 NA other upstream 3832 77406742 ~ 77407135 (-)
G442381 rpl5 other upstream 220389 77623299 ~ 77627214 (-)
G442807 NA other upstream 678835 78081745 ~ 78082010 (-)
G444001 NA other upstream 1561721 78964631 ~ 78966029 (-)
LOC110524635 LOC106560345 other upstream 1820230 79219153 ~ 79237461 (-)

Expression


Co-expression Network