LOC110524610 (LOC106584167)


Basic Information

Item Value
gene id LOC110524610
gene name LOC106584167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77622284 ~ 77627211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604435.2
AGCATTTGTCTTACTCTAAAGCTACATCCTGCTACACGCTATTTACGCAACATGCGCAATGCAAACTTCCTTTTTCTAATGCAGCGGAGTCAAATCCCCTGTCTTTGACTCCAGGCTCCTGGTTAAGGAGACAGAAAAGACTGAAAATGGGTTTTGTGAAAGTGGTGAAAAATAAGTCCTACTTCAAGAGGTACCAGGTCAAATTCAGGAGGAGGCGAGAGGGAAAGACGGACTACTTCGCCCGTAAGCGCCTGGTCATCCAAGATAAGAACAAGTACAACACACCCAAATACAGGATGATTGTCCGCTTCTCCAACCGGGATATCGTCTGCCAGATTGCCTATGCCAAGATCGAGGGGGACATGATCGTGTGCGCTGCCTACTCCCACGAGCTGCCCAAGTACGGGATCGCCGTTGGTCTGACTAACTACGCAGCAGCCTACTGCACTGGTCTGCTGCTGGCCCGCAGGCTGCTGAACAAGTTCGGCCTGGACAAGGTGTACGAGGGACAGGTGGAGGTCACTGGAGATGAGTTCAACGTGGAGAGCATCGACGGTCAGCCAGGTGCATTCACCTGCTACCTGGATGCAGGGCTCGCCAGAACCAGCACTGGCAACAAGGTTTTCGGAGCCCTGAAGGGGGCTGTGGATGGAGGCCTGTCCATCCCCCACAGCACTAAGCGCTTCCCTGGATATGATGCGGAGAGCAAAGAGTTCAATGCAGAGGTCCACCGCAAGCACATCATGGGTGTCAATGTGTCTGAGTACATGAGCTATCtgatggaggaggatgaggacgCATACAAGAAGCAGTTCTCTCGCTTCATCAAGAATGGCGTTGCCCCTGACACGGTTCAGGAGATGTACAAAAAGGCCCATGCTGGCATTCGTAACAACCCAGTCCACGAAAAGAAGCCCAAGAAAGAAGTCAAGAAGAAGAGGTGGAACCGTGCCAAGCTCTCTCTGGCCCAGAGGAAAGACCGCGTTGCTCAGAAGAAGGCCAGCTTCCTCAGGGCTCAGGAACAGGAGGCTGCCGACAGCTAAACTCTGGTCCTAATGATGTAGGGACAATTCTTTGTTCTAATAAATCTTTAGAAAAAGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604435.2 True 1102 mRNA 0.52 8 77622284 77627211
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110524606 cssa10h1orf146 coding upstream 107164 77512724 ~ 77515120 (+)
LOC110524603 LOC106560312 coding upstream 109864 77499141 ~ 77512420 (+)
LOC110524602 ephx4 coding upstream 166668 77443981 ~ 77455616 (+)
brdt brdt coding upstream 180652 77425676 ~ 77441632 (+)
LOC118964533 NA coding upstream 901152 76716999 ~ 76721132 (+)
LOC110523008 ccdc18 coding downstream 15451 77642662 ~ 77685275 (+)
scinla LOC106560322 coding downstream 64963 77692174 ~ 77705543 (+)
zgc:109982 rdh8 coding downstream 85417 77712628 ~ 77717161 (+)
dr1 dr1 coding downstream 90179 77717390 ~ 77720933 (+)
si:dkey-44g17.6 LOC106560325 coding downstream 108369 77735580 ~ 77868793 (+)
G442265 NA non-coding upstream 70253 77551701 ~ 77552031 (+)
G442264 NA non-coding upstream 70729 77550864 ~ 77551555 (+)
G442259 NA non-coding upstream 79195 77542857 ~ 77543089 (+)
G442247 NA non-coding upstream 91178 77530851 ~ 77531106 (+)
G442244 NA non-coding upstream 92737 77528485 ~ 77529547 (+)
G442350 NA non-coding downstream 53849 77681060 ~ 77681570 (+)
G442351 NA non-coding downstream 54602 77681813 ~ 77682234 (+)
G442353 NA non-coding downstream 60112 77687323 ~ 77687625 (+)
G442354 NA non-coding downstream 60787 77687998 ~ 77688317 (+)
G442273 NA other upstream 39057 77558330 ~ 77583227 (+)
G441903 NA other upstream 353518 77268212 ~ 77268766 (+)
LOC110524571 LOC106560285 other upstream 2443997 75161317 ~ 75178287 (+)
G438719 NA other upstream 2845815 74772009 ~ 74776469 (+)
LOC110524560 LOC106560270 other upstream 2852118 74729349 ~ 74770168 (+)
LOC110524622 LOC106560333 other downstream 618628 78245839 ~ 78288092 (+)
G445204 NA other downstream 2589267 80216478 ~ 80217090 (+)
G445211 NA other downstream 2607669 80234880 ~ 80235428 (+)
G446381 NA other downstream 4268593 81895804 ~ 81897781 (+)
G447001 NA other downstream 4796987 82424198 ~ 82442223 (+)

Expression

LOC110524610(LOC106584167) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1000.
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LOC110524610(LOC106584167) Expression in each Bioproject

Bar chart with 21 bars.
LOC110524610(LOC106584167) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30000.
End of interactive chart.

Co-expression Network