znf648 (LOC106560330)


Basic Information

Item Value
gene id znf648
gene name LOC106560330
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 77914925 ~ 77939001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604446.2
CTGCTGTCCCCACGTTCTTTCACTTTGACTCCGCCCACTCCGAGTGGGCATCTCTAAATGACCATCGTTCGCACGCCGACAGGAGGATGCTTATGGTTTGCCTACGGGGAGATAGGAGGACGTTGTCGAGGCACTGCCAAGGAGGTGAGTTCAGGGAAAATCCCTTTTCAGCCTCAAGCCACGTTCACCACCTTTATAATATCCAGTATGGCTGAAGAAATGCCTTCATGGACCTCAGAAAGGTTTGTTGATAAAGTATACATTTCAAAGAGAAGTATCCGGAAAAACTTAATAAACAAAATGCACTACATTTCCCACGTGCCCTCGGAGAGTGTAAAAGTCAACACTGCTCACAAAGTGGAAAGTGACTCTAACCCATCTGATAATGACGACACTGACTCCCTCTCAGGTAGTAGCTACACTGGGATGATTTATTTAAACCCACAAACACCTACATGGACTCTGGCTGAGAAGTTTGCTGGGCTCAACTCTGGAAAAGACAAGAGACTGTCTCTCAATCAGGACCTCTGTAGTCCTCCAGGTTCACCGGCAGCCATTAAGCATAATGTTGCCAATAGGAGAGGTTCTACTGGTCTGGAGGGGGTCTACTCAGACTCGTCACAACAGGAGGAAGGCAACATCAAGAATGGCACGAAAAGACTTCTGCAGAGGAAAGTGTGCAGCGGTGATCCTTCCGATCTGAAGCTGCGTCTGGTGAGAGAGATCAGGCCCAAAACCAAGGAGTCTCTGTCTGATGTTCGTCATGATGTGCGTGATGTACGTGGTAACAAGCGGAATTGGAAGGGTGGAGAACCGCTAGTCATTCCCCCTCCACTAAACAAGGCTATGGCCATGATTGATGCCTGTGAGGATAAGGTGCCTATTGTGTTTGCTGCCATGAAGAAACGTGGAgtggagggagacacagagaacCGGCCCTACAAGTGCACTCACTGCAACTGGGCCTTTAAGAAGTCCAGCAATCTGCAGAGTCATCTGgatactcatagtggcctgaagCCTCATATATGTGACCTGTGTGGCAAAGCCTATTCTCACCAAGGCACACTGCAGCAGCACAAGCGCCTGCACACTGGAGAGAGACCGTACCACTGCCCCTTCTGTGAAAAGACGTACATCTGGTCCTCCGATTACCGCAAGCACATTCGCACGCACACCGGAGAGAAACCGTACGTGTGCGAGACCTGCAGCAAGGACTTTGTGCGCTCCTCGGACCTGCGGAAGCATGAGCGCAACATGCACACCAATGAAAAACCCTTCCCGTGCACGCAGTGTGGCAAGACCTTCAACAAGCCACTGTCCCTGCTCCGCCATGAGCGCACTCACCTGGGCGAGCGGCCCTTCTGCTGTCCCATCTGCGGGAAAGCCTTTGCCGTGGCCAGCCGCATGGCAGAGCACCAGAAGGTGCACACCGGGGTGAGACCCTACACCTGCCTGGTCTGCACCAAGTCCTTCACCAAGTCCTCCAACCTGCTGGAGCACCAGGCCGTACACAGCGGTATCCGCCCCCACAAGTGTCCTCAGTGCGGGGTGGCATTTGCCATGGTGTCCCGCCTGGTCCGTCATCAGCGTGTCCATACCGGAGAGAGGCCCTACGACTGCACAGGCTGCAGCATGTCCTTCAGCCGCACAGCTGCTCTGAAACGCCACCAGGAGCAGACGTGTGCCGGGAGGATCTTTGTCTGTGTGGAGTGTGATAAGGCTTTCCAGTGTGCCGCTCAGCTCACTGAGCACATGGTGAGCCATGAATGACCCtattgctgctactgctgctactgctgcttctGTTGTTGAAGACTGATTTATGCTGTTTGGGAGCTACCCTCTCATAGAGTACAAACAGTTGGTCTAATCAACCTTACTGATCTCTACATGCtacgctcttagaaaaaagggttcccaAAGCgtttttcggctgtccccataggagaaccctttttggttcctggtacagttgggcaaaaaagtatttag
>TU501027
GCACGCCGACAGGAGGATGCTTATGGTTTGCCTACGGGGAGATAGGAGGACGTTGTCGAGGCACTGCCAAGGAGGTGAGTTCAGGGAAAATCCCTTTTCAGCCTCAAGCCACGTTCACCACCTTTATAATATCCAGTATGGCTGAAGAAATGCCTTCATGGACCTCAGAAAGgtaaccatggttgacagaggaagaacaatgattccaagcaccaccctccttttgaagcttccagtctgttattcgaactcaatcagcatgacagagtgatctccagccttgtcctcatcaacactcacatctgtgttaatgagagaatcactgacatgatgacagctggtccttttgtggcagggctgaaatgcagtggaaatgtttttgggggggattcagttcatttgcatggcaaagatggacttgcaaattgccatcatacaaactgaggcagcagactttgtgaaaattcatatttgtgtcattgtcaacacttttggccacgactgtacacatgAGCACCTCTAAGAAGAACACCTAGTAGCCTATCAAGTgcagtgtgcatcccaaatggcacctatgggtcctggtcaaaaataatgtactatataggaaataggttgCTTCTTGGCAAGCACACCTAGTAGCATATGAAGTGGAGATCAGTCATGAGGGTGCAGTTCTAAGGTTAATCATATGGGAACAATGTGAATCTTTGAAAGTACAATATGGAATGTATAACATTTTTGTTTGTTATGGATTTGGCaggttttgtttttgtattttttacctGTGTTTTTGGTGTCTTTGATGAAGAGTATGGACACCTTGATTGCAAAGGACTGCCGAATAACATAATGCAGAAAGCACCATCCTTTTCTGAAAATATAGACCAGCAAGATTGAATTCAATGGACGTCCTTTGAAACACTTTAAAGCTCACAGCAGGGACCTTAAATGAGTTTGAAAGTCCAGTAATTTGTCTTACTAAGACCAGGTGATCCGTTGTGAAAATTGGTCCCCCAATACCTCTGTAGCACAGGAGGCTGCTAACGGGAGAACGGCTctcaataatggctggaatggagtgaatggaatggtatcaaacacatggaaaccatgtatttaatgtgttcgataccattccatttattccctTCCAGCTATTACTATGAacacgtcctccccaattaaggtgccactcgCTGCCTGTGCTCTGTAGTTAACCTTAAGTCTTACTACAATCCACAACTTACTCAATAATACAGTTTTGATACCATCAGATACCATCAGTGCCATCCAGTCACATGATACTATACAGTAAGAGTCTCACTCACTATTTCTATGCAATAATCTAGAGATTGGGTTGAATGAAAACCAGAGTGGAGTCATTCAGAGCTGCTGTCCGACTGACAGGCTAATGGTCATTAGGAGTTCACATGATACTACAAAAGTGCTGTTAATACATGGTGCTAACAAGCCCCCTTTGTCCTGATTGTGTTCACATCCTGAATGTACCCACATTTGTAGACGATCaaaagacacattgtgatctgattgtgatcttCCTGACCACCTGCTGAGGTAGACAGGCACATAGccgtgggaagtaggggtgctgagggtgccgCAGCACCCCCTGATTTCTTCtccacaaaagtagtgcactgggcctttactagtacgATATTAACGGACTTATATAGCCGTCTGTAGTGCAGCACCCCCGCCCTCAAACATCTTCCCACGTCCATGGACAGGCATgcattgtgtctggatatcttacaaATGTAGACATATCTAGACAGTGAAACCATTTGAATCATAATTATCCCACcttctaaaatcattgacaggtggcACCATTGACTTATGACATCAatttatgttttaaaataaatacatttatattaTTTTTGAAAGAATATTCATTAAATAATTGGATGCATGTTAGCGCCCGGTATAAACAaggctctggtcactagtgtgTTCACTTCCTAGTGTGTTCACTTCCTAGTGTGTTCTCTTCCTAGTGTGGATACATTTGTGAGAAAAAATCTTGACACGAGGCATCCTTGCCCTCTTGCCCAGGGTGGCACATTTTATGTTTGTTTATATGTGTCAAGAAATATTGTGTGAATATTTGCTAGATGTCAGAAAAATGTAGAATGTTATTTCAGGTGTCAAATTGATATTCTATTTGAAGACCAAAGGTCTACCGAATATTGCAGGTTTGAAAGAATATATAATATTTACTGTACTGTCTGCAATGGAGCTGATTTCTGTAGCTGTCTGCTGCAGTAACACATAGATGTTATGTGTATAATTGGATTGGAGTAAAAGAGAACAATAATTGAAATAAAAGAGAATGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604446.2 False 1995 mRNA 0.52 2 77925215 77939001
TU501027 True 2367 lncRNA 0.41 3 77914925 77938931

Neighbor

gene id symbol gene type direction distance location
gadd45ab LOC106560326 coding downstream 50372 77871765 ~ 77874843 (-)
LOC110524609 fam69a coding downstream 283066 77627457 ~ 77642149 (-)
LOC110524608 evi5 coding downstream 307504 77558322 ~ 77617711 (-)
LOC110524607 LOC106560317 coding downstream 368347 77548860 ~ 77556868 (-)
LOC110524605 LOC106560313 coding downstream 397354 77515118 ~ 77527861 (-)
glulb LOC106560331 coding upstream 44743 77983744 ~ 77987655 (-)
LOC110524621 med8 coding upstream 300767 78239768 ~ 78245830 (-)
hyi hyi coding upstream 444004 78383005 ~ 78387067 (-)
LOC110524635 LOC106560345 coding upstream 1280152 79219153 ~ 79237461 (-)
LOC118964722 LOC106584191 coding upstream 1304246 79243247 ~ 79282591 (-)
G442664 NA non-coding downstream 16350 77903116 ~ 77908865 (-)
G442666 NA non-coding downstream 22887 77901782 ~ 77902328 (-)
G442649 NA non-coding downstream 43264 77881225 ~ 77881951 (-)
G442644 NA non-coding downstream 54160 77870368 ~ 77871055 (-)
G442643 NA non-coding downstream 56558 77867288 ~ 77868657 (-)
G442676 NA non-coding upstream 4272 77943273 ~ 77943849 (-)
G442680 NA non-coding upstream 14074 77953075 ~ 77953321 (-)
G442696 NA non-coding upstream 38642 77977643 ~ 77977982 (-)
G442703 NA non-coding upstream 52174 77991175 ~ 77991411 (-)
G442713 NA non-coding upstream 65408 78004409 ~ 78004634 (-)
G442381 rpl5 other downstream 298001 77623299 ~ 77627214 (-)
G442115 NA other downstream 518080 77406742 ~ 77407135 (-)
G441630 NA other downstream 903840 77013999 ~ 77021375 (-)
G441483 NA other downstream 1022444 76902382 ~ 76902771 (-)
G441168 glrx2 other downstream 1334845 76586458 ~ 76590370 (-)
G442807 NA other upstream 142744 78081745 ~ 78082010 (-)
G444001 NA other upstream 1025630 78964631 ~ 78966029 (-)
G444691 LOC106605670 other upstream 1791986 79730987 ~ 79731536 (-)
G445115 NA other upstream 2043460 79982461 ~ 79987704 (-)

Expression


Co-expression Network