LOC110524621 (med8)


Basic Information

Item Value
gene id LOC110524621
gene name med8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 78239768 ~ 78245830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604453.2
CAGCTAGGCCTTCAACGGATTTGTAGTTCTACTTTTGATTCCAATATGCCAGCTTTCTGAAAAAGAGTGCAGATAAGTGGTATAAAATATTTTATTGAGAATTTCACGGCATAACGACTCAAAGTAACACACGGTTGTCTGGCTAATTACAAAGGTTTGGAACTTAAAACGTAAAGCAAAATGATTCTGAGCGGAGCATGCCCACTGTTGCACGCATTATTTACTTCCGGTAGATATTTATTTCGCTAGCCAGCAGGTTCGCTACCCTAATAAAATGCAGCAACGGGAAGAAAAATTGCTGGACGCATCCGTGGAATCGCTTATTTCCCGCGTAGCTCATCTAAAAAATGCTCTTCACAGTTTCATCTACAAGTTGGAAAACGAGTATGAACGACTGACATGGCCCTCTGTGTTGGACAACTTTGCCCTCTTGTCCGGTCAGTTGAACACCATCAATAAACTGTTGCGGAATGAGAAGACGCCATCTTTCCGCCAGCAGATCATCATCCCCCTGCTGTTGTCTCCAGACAGGGATGAAGAACTAGCTAAACTGACAGAGCAACGCGTGCCTGTGTTCAGCCATGAGATTGTGCCGGATCACCTGCGCACCAAGCCTGATCCTGAggtggaggagcaggagaaaCAGCTGAGTGCGGAAGCTGCCCGGATAGGACCTGAGGTGGCACAGAAACAAATCCAGACACTGAACAAACTCTGTTCAAATCTACTGGAGAAACTGAACAATCCTCGCGATGACAGGGATGCAGACAGTGCAGCTATACGGCAAAACAAACCGTCTTTCAACCCTGCTGACACCAATGCACTGGTGGCAGCGGTGGGATTTGGGAAGGGGCTTTCGAAGTGCAGGCCTCCAGGTCCTGTGGCCCCTGGACACACAGGACAAGGGCCCATGATGAGCGGAGGTCCCACCTTACAGCAGGTCACCATCGGTGGGGGTTCAGGCCAGCAGCAAGGCATGGGGCCTGGTGCTCCTCAGCAGCAAGGACAGCCAGggAAAATGCCATGTAACATCAAGACAAACATCAAGTCTGCCTCCTCAATGCATCCTTACAACCGATAAGATCCGCTCTCTATCCCATAGTGATAGGAAGCCTACAGAGTGAGCCATGTAAAGTAATGCAAGTATTCATATGATATATGCGATGTTATCTTTTGATTAAATACATACTTTTTCGAAGAAAGTATCATACTGTGAAAGTGCAGAAATTTGT

Function

symbol description
med8 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED8 (mediator complex subunit 8).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 8

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15129 MED8; mediator of RNA polymerase II transcription subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604453.2 True 1232 mRNA 0.47 7 78239768 78245830

Neighbor

gene id symbol gene type direction distance location
glulb LOC106560331 coding downstream 252113 77983744 ~ 77987655 (-)
znf648 LOC106560330 coding downstream 300767 77914925 ~ 77939001 (-)
gadd45ab LOC106560326 coding downstream 364925 77871765 ~ 77874843 (-)
LOC110524609 fam69a coding downstream 597619 77627457 ~ 77642149 (-)
LOC110524608 evi5 coding downstream 622057 77558322 ~ 77617711 (-)
hyi hyi coding upstream 137175 78383005 ~ 78387067 (-)
LOC110524635 LOC106560345 coding upstream 973323 79219153 ~ 79237461 (-)
LOC118964722 LOC106584191 coding upstream 997417 79243247 ~ 79282591 (-)
LOC118964780 NA coding upstream 1048429 79294259 ~ 79294385 (-)
cdh2 LOC106560349 coding upstream 1139710 79385540 ~ 79459507 (-)
G443066 NA non-coding downstream 2485 78233349 ~ 78237283 (-)
G443122 NA non-coding downstream 9259 78229753 ~ 78230509 (-)
G443067 NA non-coding downstream 11533 78224562 ~ 78228235 (-)
G443082 NA non-coding downstream 75210 78163103 ~ 78164558 (-)
G442759 NA non-coding downstream 201171 78038321 ~ 78038597 (-)
G443147 NA non-coding upstream 51938 78297768 ~ 78298784 (-)
G443159 NA non-coding upstream 81122 78326952 ~ 78327162 (-)
G443160 NA non-coding upstream 82366 78328196 ~ 78328428 (-)
G443162 NA non-coding upstream 85752 78331582 ~ 78331821 (-)
G443164 NA non-coding upstream 89647 78335477 ~ 78335918 (-)
G442807 NA other downstream 157758 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 612554 77623299 ~ 77627214 (-)
G442115 NA other downstream 832633 77406742 ~ 77407135 (-)
G441630 NA other downstream 1218393 77013999 ~ 77021375 (-)
G441483 NA other downstream 1336997 76902382 ~ 76902771 (-)
G444001 NA other upstream 718801 78964631 ~ 78966029 (-)
G444691 LOC106605670 other upstream 1485157 79730987 ~ 79731536 (-)
G445115 NA other upstream 1736631 79982461 ~ 79987704 (-)
G445197 NA other upstream 1930932 80176762 ~ 80177080 (-)

Expression


Co-expression Network