LOC118964722 (LOC106584191)


Basic Information

Item Value
gene id LOC118964722
gene name LOC106584191
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79243247 ~ 79282591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118964722
ATGGCCGCCTTCAAGGGGATCTTGACGCAGGAGTTCTGGCGTTGCATGGGGGCAGAGTTCTTAGCCATGATAATCTTTGTCCCACCCTGACCTAGTCCTCCTGACCTAGCACCCACCCTGACCTAGTCCTCATCTCCCTCTGCTTCGGAATCAGCATTGCCACCTTGGTCAAGTGTTTTGGACACATGAGTGGAGCTCATATTAACCCTGCGGTGACCGCAGCCATGGTGGTGACCCAGGGACTCAGCTTGGCCAAGGCAGTGTTTTACCTCCTGGCACAGTGTCTGGGAGCATTGGTGGGTGCAGCTGTGCTCTACGGGGTTACTCCAGATGTTCTCAGGGTCGAGGTGGGCGTCACATCAGTGAACACGAGTATCTCTGTGGGCCATCACCTTCGAACTCATCTTCACCATGTTAGCCACCTGTGACCCCAAATGCAGAGACCTGAAGGGCTCAGCTGCCCTGGCAATCGGCTTCTCTGTCTGCATCGGACACCTGTTCGATCTTCCCTACACTGGTGCCAGTGTGAATCTTGCTCGATCATTCGGACCTGCCTCGGTCACCTGGAGCTGGGAGAACCACTGGGTAAGAGTTAACAaatga

Function

NR:

description
PREDICTED: aquaporin-4-like isoform X4

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006833 water transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118964722 True 603 mRNA 0.55 3 79243247 79282591

Neighbor

gene id symbol gene type direction distance location
LOC110524635 LOC106560345 coding downstream 16608 79219153 ~ 79237461 (-)
hyi hyi coding downstream 856180 78383005 ~ 78387067 (-)
LOC110524621 med8 coding downstream 997417 78239768 ~ 78245830 (-)
glulb LOC106560331 coding downstream 1255592 77983744 ~ 77987655 (-)
znf648 LOC106560330 coding downstream 1304246 77914925 ~ 77939001 (-)
LOC118964780 NA coding upstream 11668 79294259 ~ 79294385 (-)
cdh2 LOC106560349 coding upstream 102949 79385540 ~ 79459507 (-)
LOC118964535 NA coding upstream 253993 79536584 ~ 79606825 (-)
LOC110524638 LOC106560389 coding upstream 582586 79865177 ~ 79896739 (-)
b4galt6 LOC106560385 coding upstream 705535 79988126 ~ 80016243 (-)
G444149 NA non-coding downstream 25748 79217282 ~ 79217499 (-)
G444145 NA non-coding downstream 29558 79213320 ~ 79213689 (-)
G444144 NA non-coding downstream 30189 79212845 ~ 79213058 (-)
G444143 NA non-coding downstream 31440 79211600 ~ 79211807 (-)
G444235 NA non-coding upstream 70259 79352850 ~ 79353065 (-)
G444238 NA non-coding upstream 71577 79354168 ~ 79354403 (-)
G444318 NA non-coding upstream 98651 79381242 ~ 79381457 (-)
G444443 NA non-coding upstream 241946 79524537 ~ 79525518 (-)
G444001 NA other downstream 277218 78964631 ~ 78966029 (-)
G442807 NA other downstream 1161237 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 1616033 77623299 ~ 77627214 (-)
G442115 NA other downstream 1836112 77406742 ~ 77407135 (-)
G444691 LOC106605670 other upstream 448396 79730987 ~ 79731536 (-)
G445115 NA other upstream 699870 79982461 ~ 79987704 (-)
G445197 NA other upstream 894171 80176762 ~ 80177080 (-)
LOC118964653 LOC106581256 other upstream 942884 80223240 ~ 80233361 (-)
G445220 NA other upstream 963352 80245943 ~ 80261505 (-)

Expression


Co-expression Network