LOC110524638 (LOC106560389)


Basic Information

Item Value
gene id LOC110524638
gene name LOC106560389
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79865177 ~ 79896739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604482.2
GGTGGTGATCGTTACGGCCAGCCCCAGAGCGGACTCCGTACCCCCttacagcctgtctctctctctgtctcaattctTCCCGACACACCCTTGGAATTAATGTGTGAGCTAAAATAATTACCAAGGCTCAAGAGCCAAAACCTCCACCCATCCCTCGCGCCGCGCTGCACCCGGGACTTCACCGAACGACTTCAGTCATTTTAGGTAGGGCGCGATTCTCCAGACTTCTGTTTATTCATCCCGCCGCACAATGGCCCCGGGCGTCTTTTGCGTCAGCCTGCTCACTGTGaTCATAGCTCAGTCTGAGTGCTGTGTTCCTCATTCCATCCAAGCCCAGGTCCCAGTGGAGGTCAGGCCTGGCTATGTCATCTCTCAAGTACCAGTGACAGGGTGTCACATACAGGGACAGTGGCTGACCTCCAGTGACCCCCACTTCGCCATGCGGAGCGACGGCACCATTGTCACGGTGGACGTCACAACGGTTACAGCGGAGGGCAGGTCCTTCTGGGTGAGGGGGAGGGACGGGGGAGGACGGCGCTGGAGGATGGAGGTCCATCTGTCCCCAGATCTTGAACAGGAGCATATTCAAGTACCCATGAGGGTGCCCTTCAATGTGCCTGCACATAAAGGGGTTCAGAGGGGtccgtctgaggtcctgaggcgCTCTAAAAGGAGATGGAGTCCTCTCCCTTTCAGCATCATAGAGCAGGACATCCCTCCTTTCCCCAAAGATGTAGAACTGGTGGGGTCAGATTCATCAGTGAATTTCACAGTGTACTATATAATCAGTGGTTCAGGGGTGACCATGCCCCCGGAGAAGCTTTTTTCTGTGGATCGTGACACAGGCATGGTGCGTGTGCACTACCCTGTTGACCGGGAACAGTACCCCAAGTTTGTGTTCACAGCCCAGGTGTTTGACAGGCGGTCGGGGAAGGAGACAGATCGGCCTCTGGACATTACTGTTCTGGTGGAAGATATCAATGACAACGCACCGACCTTCTCTGGACCACTCACCTTCTCTGTGTTAGAGCAGTGCAAAcctggtaCTGAGGTAGGAGAAGTGAAATCCACTGATAAGGATGAAGCAGACACTCCCCACACTAAGATCAGATACACCCTTCTGACTGGTGGTCAGTTCTTCACCATCGGGTCTCACAGTGGGCTGATCACAGCCAAGACCAGCACTCTTGACAGAGAGACGCAGGTTGTCAATGCTGTTACCGTGGAGATCCGGGACATGGATGGAGCTAAGAACGGTCTGTTTAACACTGCCACGGCCACCATTACGCTACTGGACATCAACGACAACCCTCCCACCTTCAGGGAGACCACCTACAAGGCCACTGTAAAGGAGAACCAAGCAGACATGCTGGTCCTGAGGATTCCTGTGGATGACAAGGATGAGGAGAAGACTCCAAACTGGAACGCCAGGTTTGTCATCACCCAGGGCAACGAGAATGGGAATTTCCGGATCGACACGGACCCTGAAACCAATGAGGGCCTGCTCTATGTCGTCAAGCCTCTTGATTATGAGAAGGGGAAGACAGTGAAGCTGATGATCTCTGCCCAGAATGAGGCTCCCCTGGTGGGCATGGCAGGGACCTGGCTGTCCATCCCTGTGGATGTCAGTGTGGGTGATGAGGACGAGGGGCCAGAGTTTACCCCTCCTAACATGGTGATCAGGGTTAAAGAGAACACTCCCAACGGGACCCTCCTCTCCACGTACACTGCACTGGACCCAGAGACCAAGAGTAGCAAGGGGATCAAGTACTACACAAAATTTGACCCTGGCTCATGGATAGCTGTGGGAGAGACCACGGGAGAGCTGAGGGTAGCTAACACCATCGACCTTGAGTCTCCTCTAGTTACCAACGGAGCCTACACGATCACTATCAAAGCTGTGGACGAGAGTAGGAAGTCTGGCAATGGCAATATAACGCTGCTGATCGAGGACGTTAATGACAACGTCCCGATGATCGTCCCGGGGACATACCTGACGTTGTGTGAGGGGGAGGACGGGCAGATGGGCTCCGTAACCATAGAAGCAGAGGATGCTGACCTATCACCTTATGCCAGACCCTTCAACTTCATGCTGCCAGAGGGGCATGATGGGAAATGGAGGCTGAGAGACATTCAAAATGGGTCAGCTGTGCTGGAGCAGGTGGTGGAGATGGCCCGGGGTGTGTATACGGTCCCTGTGCATGTGACTGACCTCCAGAATAAGGGCGGGGTCCAGGTGTTGTCTTTAAGGGTGTGTCAGTGCCTGGGGGGAGAGTGTGTGGCCAAGAGGAGTTCTGTCTCTGTGGGGATCTGGGGCGTCCTAGCCATGCTGCTGGCCTTCCTGCTGCTCCTACTGCTCTGTCTATTATTTGTGTTTTACTGCACCACTAAGGGAGAGAAGATCTACATGGAAGACTGTAGTGGTGGCATGCTGCTGAAGTCTAACACAGAGGCTCCTGGAGATGAAGTGAAATCTGCGGCCCTGCTGATTGTACCTTCCACCGGTGTTGCCGTGGACACAGTGGATGGCTCTGTGAAGGGGGCAGGGCTGGTGGGGCTTCTGGATCAGAATGGGGCGGGGTGTCCGGCTCCAGGTCCTCCTCTGATTGGTCAGAAGACGATCAATCTGAATCGGGAGAGCAGTAGGCGGGACTTCCTGACAGCTCAGGGACAGAGTAGCTTTTACTCCACTGGACAGTACGGGGGCGGTAACTTCTACACAGACACTACCTTCCTCAAACAGTCCCAGGCTTCCTCCACTCTCTCCGCCTTGCACACCTGGAAGACCAACGGACTCTACCTGGGCAAGAAGCTGGTCTATTTTGCAGATGAGTCAGAGGAGCGTTATGCGGACGACGTGGCCCGAGCGTACGGGTATGAGGGTGAAGGGTCACCGGCCGGGTCGGTGGGTTGCTGCAGTGACTTTGGTGACCAGGATAACCTGGACTTCCTGGAGTCACTGGGGTCAAAGTTCAAAACACTGGCCAACATCTGCAtggacaaggaggaggagatcTGAGATGAGAACACGATTAAAGAACACAAGTAAGATGAACACAAAGCAACTAATAAGATCAGAACCTTTGGGAGAAAGACAACCACTAAAGTCAATGGAAGGTGAATGCCAAGAGCGTGTCGTCAGTATGTGAGACTGTCAGTGAGTGAGTCTGATGATAGATCTGTTGTTTTGGATGGGAGACAACGATATGGCAGGTATTCTTTCTCTCCTCAGCCTTCTACATTGCCTGTACCTCACTCTGAGGTACACATGCTACTGACTGTTAGTGCTCTGATCTGGTTTCAGTTATGCTCTGCTTTGACACCAGGGGGCGTATGTCCCTGTTTTTACTGTAATACAACACTGGCCAggatcagtgtgtttgtgtgtgatagaGATCAGATAGAGATCATATTTCTGCAGTTGTCATTGCTGAATGTGTAACATAATCTCTGAGTCAATTGGTTTCTGTAGGAGATGAGATAATGCTTCATAATTGCTGCCGTTTGTCAAGGGCTCACACTATTTTGTCTTTTTCTAATGAGAAAATAAATAGCAAATTTAAGCAGAAAGAGAAGAGCTTTGTTTTGTAAATTTGTGCTTGAAGATGTTAATGCAGAGTATTTTTCTATTGTACTGTATACATTAAAACGGTCTGCTTCTTGAA
>XM_036978490.1
GGTGGTGATCGTTACGGCCAGCCCCAGAGCGGACTCCGTACCCCCttacagcctgtctctctctctgtctcaattctTCCCGACACACCCTTGGAATTAATGTGTGAGCTAAAATAATTACCAAGGCTCAAGAGCCAAAACCTCCACCCATCCCTCGCGCCGCGCTGCACCCGGGACTTCACCGAACGACTTCAGTCATTTTAGaTCATAGCTCAGTCTGAGTGCTGTGTTCCTCATTCCATCCAAGCCCAGGTCCCAGTGGAGGTCAGGCCTGGCTATGTCATCTCTCAAGTACCAGTGACAGGGTGTCACATACAGGGACAGTGGCTGACCTCCAGTGACCCCCACTTCGCCATGCGGAGCGACGGCACCATTGTCACGGTGGACGTCACAACGGTTACAGCGGAGGGCAGGTCCTTCTGGGTGAGGGGGAGGGACGGGGGAGGACGGCGCTGGAGGATGGAGGTCCATCTGTCCCCAGATCTTGAACAGGAGCATATTCAAGTACCCATGAGGGTGCCCTTCAATGTGCCTGCACATAAAGGGGTTCAGAGGGGtccgtctgaggtcctgaggcgCTCTAAAAGGAGATGGAGTCCTCTCCCTTTCAGCATCATAGAGCAGGACATCCCTCCTTTCCCCAAAGATGTAGAACTGGTGGGGTCAGATTCATCAGTGAATTTCACAGTGTACTATATAATCAGTGGTTCAGGGGTGACCATGCCCCCGGAGAAGCTTTTTTCTGTGGATCGTGACACAGGCATGGTGCGTGTGCACTACCCTGTTGACCGGGAACAGTACCCCAAGTTTGTGTTCACAGCCCAGGTGTTTGACAGGCGGTCGGGGAAGGAGACAGATCGGCCTCTGGACATTACTGTTCTGGTGGAAGATATCAATGACAACGCACCGACCTTCTCTGGACCACTCACCTTCTCTGTGTTAGAGCAGTGCAAAcctggtaCTGAGGTAGGAGAAGTGAAATCCACTGATAAGGATGAAGCAGACACTCCCCACACTAAGATCAGATACACCCTTCTGACTGGTGGTCAGTTCTTCACCATCGGGTCTCACAGTGGGCTGATCACAGCCAAGACCAGCACTCTTGACAGAGAGACGCAGGTTGTCAATGCTGTTACCGTGGAGATCCGGGACATGGATGGAGCTAAGAACGGTCTGTTTAACACTGCCACGGCCACCATTACGCTACTGGACATCAACGACAACCCTCCCACCTTCAGGGAGACCACCTACAAGGCCACTGTAAAGGAGAACCAAGCAGACATGCTGGTCCTGAGGATTCCTGTGGATGACAAGGATGAGGAGAAGACTCCAAACTGGAACGCCAGGTTTGTCATCACCCAGGGCAACGAGAATGGGAATTTCCGGATCGACACGGACCCTGAAACCAATGAGGGCCTGCTCTATGTCGTCAAGCCTCTTGATTATGAGAAGGGGAAGACAGTGAAGCTGATGATCTCTGCCCAGAATGAGGCTCCCCTGGTGGGCATGGCAGGGACCTGGCTGTCCATCCCTGTGGATGTCAGTGTGGGTGATGAGGACGAGGGGCCAGAGTTTACCCCTCCTAACATGGTGATCAGGGTTAAAGAGAACACTCCCAACGGGACCCTCCTCTCCACGTACACTGCACTGGACCCAGAGACCAAGAGTAGCAAGGGGATCAAGTACTACACAAAATTTGACCCTGGCTCATGGATAGCTGTGGGAGAGACCACGGGAGAGCTGAGGGTAGCTAACACCATCGACCTTGAGTCTCCTCTAGTTACCAACGGAGCCTACACGATCACTATCAAAGCTGTGGACGAGAGTAGGAAGTCTGGCAATGGCAATATAACGCTGCTGATCGAGGACGTTAATGACAACGTCCCGATGATCGTCCCGGGGACATACCTGACGTTGTGTGAGGGGGAGGACGGGCAGATGGGCTCCGTAACCATAGAAGCAGAGGATGCTGACCTATCACCTTATGCCAGACCCTTCAACTTCATGCTGCCAGAGGGGCATGATGGGAAATGGAGGCTGAGAGACATTCAAAATGGGTCAGCTGTGCTGGAGCAGGTGGTGGAGATGGCCCGGGGTGTGTATACGGTCCCTGTGCATGTGACTGACCTCCAGAATAAGGGCGGGGTCCAGGTGTTGTCTTTAAGGGTGTGTCAGTGCCTGGGGGGAGAGTGTGTGGCCAAGAGGAGTTCTGTCTCTGTGGGGATCTGGGGCGTCCTAGCCATGCTGCTGGCCTTCCTGCTGCTCCTACTGCTCTGTCTATTATTTGTGTTTTACTGCACCACTAAGGGAGAGAAGATCTACATGGAAGACTGTAGTGGTGGCATGCTGCTGAAGTCTAACACAGAGGCTCCTGGAGATGAAGTGAAATCTGCGGCCCTGCTGATTGTACCTTCCACCGGTGTTGCCGTGGACACAGTGGATGGCTCTGTGAAGGGGGCAGGGCTGGTGGGGCTTCTGGATCAGAATGGGGCGGGGTGTCCGGCTCCAGGTCCTCCTCTGATTGGTCAGAAGACGATCAATCTGAATCGGGAGAGCAGTAGGCGGGACTTCCTGACAGCTCAGGGACAGAGTAGCTTTTACTCCACTGGACAGTACGGGGGCGGTAACTTCTACACAGACACTACCTTCCTCAAACAGTCCCAGGCTTCCTCCACTCTCTCCGCCTTGCACACCTGGAAGACCAACGGACTCTACCTGGGCAAGAAGCTGGTCTATTTTGCAGATGAGTCAGAGGAGCGTTATGCGGACGACGTGGCCCGAGCGTACGGGTATGAGGGTGAAGGGTCACCGGCCGGGTCGGTGGGTTGCTGCAGTGACTTTGGTGACCAGGATAACCTGGACTTCCTGGAGTCACTGGGGTCAAAGTTCAAAACACTGGCCAACATCTGCAtggacaaggaggaggagatcTGAGATGAGAACACGATTAAAGAACACAAGTAAGATGAACACAAAGCAACTAATAAGATCAGAACCTTTGGGAGAAAGACAACCACTAAAGTCAATGGAAGGTGAATGCCAAGAGCGTGTCGTCAGTATGTGAGACTGTCAGTGAGTGAGTCTGATGATAGATCTGTTGTTTTGGATGGGAGACAACGATATGGCAGGTATTCTTTCTCTCCTCAGCCTTCTACATTGCCTGTACCTCACTCTGAGGTACACATGCTACTGACTGTTAGTGCTCTGATCTGGTTTCAGTTATGCTCTGCTTTGACACCAGGGGGCGTATGTCCCTGTTTTTACTGTAATACAACACTGGCCAggatcagtgtgtttgtgtgtgatagaGATCAGATAGAGATCATATTTCTGCAGTTGTCATTGCTGAATGTGTAACATAATCTCTGAGTCAATTGGTTTCTGTAGGAGATGAGATAATGCTTCATAATTGCTGCCGTTTGTCAAGGGCTCACACTATTTTGTCTTTTTCTAATGAGAAAATAAATAGCAAATTTAAGCAGAAAGAGAAGAGCTTTGTTTTGTAAATTTGTGCTTGAAGATGTTAATGCAGAGTATTTTTCTATTGTACTGTATACATTAAAACGGTCTGCTTCTTGAA

Function

NR:

description
desmocollin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604482.2 False 3665 mRNA 0.52 16 79865177 79896739
XM_036978490.1 True 3580 mRNA 0.52 16 79865177 79896739

Neighbor

gene id symbol gene type direction distance location
LOC118964535 NA coding downstream 258352 79536584 ~ 79606825 (-)
cdh2 LOC106560349 coding downstream 405670 79385540 ~ 79459507 (-)
LOC118964780 NA coding downstream 570792 79294259 ~ 79294385 (-)
LOC118964722 LOC106584191 coding downstream 582586 79243247 ~ 79282591 (-)
LOC110524635 LOC106560345 coding downstream 638538 79219153 ~ 79237461 (-)
b4galt6 LOC106560385 coding upstream 91387 79988126 ~ 80016243 (-)
LOC110524643 LOC106560384 coding upstream 178957 80075696 ~ 80166743 (-)
LOC118964650 LOC106581256 coding upstream 295646 80192385 ~ 80197919 (-)
LOC118964651 LOC106581256 coding upstream 311673 80208412 ~ 80210788 (-)
LOC118964652 LOC106581256 coding upstream 314445 80211184 ~ 80213484 (-)
G444797 NA non-coding downstream 58353 79806511 ~ 79806824 (-)
G444794 NA non-coding downstream 59995 79804798 ~ 79805182 (-)
G444791 NA non-coding downstream 61447 79803477 ~ 79803730 (-)
G444788 NA non-coding downstream 62188 79802412 ~ 79802989 (-)
G444780 LOC100194703 non-coding downstream 65904 79798987 ~ 79799273 (-)
G445055 NA non-coding upstream 12421 79909160 ~ 79909360 (-)
G445070 NA non-coding upstream 29055 79925794 ~ 79926468 (-)
G445074 NA non-coding upstream 35362 79932101 ~ 79936292 (-)
G445086 NA non-coding upstream 52514 79949253 ~ 79949580 (-)
G445103 NA non-coding upstream 71585 79968324 ~ 79968599 (-)
G444691 LOC106605670 other downstream 133641 79730987 ~ 79731536 (-)
G444001 NA other downstream 899148 78964631 ~ 78966029 (-)
G442807 NA other downstream 1783167 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 2237963 77623299 ~ 77627214 (-)
G445115 NA other upstream 85722 79982461 ~ 79987704 (-)
G445197 NA other upstream 280023 80176762 ~ 80177080 (-)
LOC118964653 LOC106581256 other upstream 328736 80223240 ~ 80233361 (-)
G445220 NA other upstream 349204 80245943 ~ 80261505 (-)
G446775 NA other upstream 2046546 81943285 ~ 81943611 (-)

Expression


Co-expression Network