LOC118964651 (LOC106581256)


Basic Information

Item Value
gene id LOC118964651
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80208412 ~ 80210788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978498.1
tggcaaaatcaagtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggtttcaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatcctcatctgccagatcaaagaagtcagagtgggaattttcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgCATTCCACCCTGATCTAACAGCTGCGATAGCAAGACTGGAGGAGCTCATATCTCAGGgtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcttccgatacagtccttactgagctgaagaggaatgacaagaCGGTGGGGAAGCCCACAGCTTACAAGCTGGTTCAGCTTTTTGCAGAGGAGTCTGTGAAGCGCCTCTTGCTTCCTAGCCTTATGCCCTCTACAGcttcaatgagtttggctcagggagttagtgtgccggctagcgtatctgaagataggatttcatgttctttttctacatcagcatttagtgacacagtcagcctgtttaccaaagtaatggtaagccaggtcatggactctgtggtttctgatgcacaaagcagagggtcatctccaaccggaactgtaactgatataggcagtctactgagtggtaagtcctaccctctgccatctttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtgtaagtccatacagcaggacatttactgtttgagatattggtgtacaaagctgctattgcaaaaatattaaaccctatatacagtacattatatattatcgATAGTAATCTCTTATGTACAATTATTTATAGTTTCCAAATCTCAAGATTCTGGTTCTCATTTATTTGTGAAAGTAATAATGAGTTGAAACTAAGAATACAATATACCATCATTTCTAAATGAAAGTgcatgtcaactctctctcttctgtcgccCAACATAGTGGCACATCCTGCCACGTTTGAACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGGTTTTCAAAGCAAGCTTAATACAACAATTTCCTTTAATACAGTAATATTTGCATTGAATTGATGGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106581256

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978498.1 True 2188 mRNA 0.45 2 80208412 80210788

Neighbor

gene id symbol gene type direction distance location
LOC118964650 LOC106581256 coding downstream 10493 80192385 ~ 80197919 (-)
LOC110524643 LOC106560384 coding downstream 41669 80075696 ~ 80166743 (-)
b4galt6 LOC106560385 coding downstream 192169 79988126 ~ 80016243 (-)
LOC110524638 LOC106560389 coding downstream 311673 79865177 ~ 79896739 (-)
LOC118964535 NA coding downstream 601587 79536584 ~ 79606825 (-)
LOC118964652 LOC106581256 coding upstream 396 80211184 ~ 80213484 (-)
LOC118964653 LOC106581256 coding upstream 12452 80223240 ~ 80233361 (-)
LOC118964655 LOC106581256 coding upstream 30211 80240999 ~ 80244648 (-)
LOC118964723 NA coding upstream 36905 80247693 ~ 80264560 (-)
LOC118964654 LOC106581256 coding upstream 45324 80256112 ~ 80259829 (-)
G445202 NA non-coding downstream 7169 80200950 ~ 80201243 (-)
G445191 NA non-coding downstream 35791 80172237 ~ 80172621 (-)
G445189 NA non-coding downstream 36379 80171543 ~ 80172033 (-)
G445174 NA non-coding downstream 55680 80152398 ~ 80152732 (-)
G445173 NA non-coding downstream 58246 80149920 ~ 80150166 (-)
G445206 NA non-coding upstream 9850 80220638 ~ 80220893 (-)
G445217 NA non-coding upstream 31798 80242586 ~ 80242951 (-)
LOC118964724 NA non-coding upstream 94299 80282518 ~ 80308754 (-)
G445225 LOC106581256 non-coding upstream 100812 80311600 ~ 80311884 (-)
G445226 LOC106581256 non-coding upstream 101507 80312295 ~ 80312631 (-)
G445197 NA other downstream 31332 80176762 ~ 80177080 (-)
G445115 NA other downstream 220708 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 476876 79730987 ~ 79731536 (-)
LOC110524635 LOC106560345 other downstream 970951 79219153 ~ 79237461 (-)
G444001 NA other downstream 1242383 78964631 ~ 78966029 (-)
G445220 NA other upstream 35155 80245943 ~ 80261505 (-)
G446775 NA other upstream 1732497 81943285 ~ 81943611 (-)
G447220 NA other upstream 2179867 82390655 ~ 82391224 (-)
G447993 NA other upstream 3106725 83315161 ~ 83319715 (-)

Expression


Co-expression Network