LOC118964652 (LOC106581256)


Basic Information

Item Value
gene id LOC118964652
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80211184 ~ 80213484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978499.1
gcaagtgatctacaaaggactaaaaaaccctatgacgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGAcgacactgactcacccaagaggggtggcagtgcaagatcctttgctgcctttgatcaggaaagactggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGttcccagacctcagtgaaagtcctcctgggaatgacagaggacagaatcatcaaaagtgtccaggagcaactgtcTGATCATAATATCCTGTCCTCTTGCCCACCTGAGCTGACTGTTGGTCTTATCAAGGTGGTGGTCGAACAGCTTAACTCTGCCCTCTCTGCGACCATCAGCAGAGCCATTTCAGGGCGGTCATCCCCTATTTCTTCTGGTACCCAGGCCGCTGAACAaatggtcaacatggtccagaaatgttttgatgatcACACCACCCCAGAGGACCAGAGCTCTACCTCTGTATTAGAGTCATGCATTCCACCTGCAACAGAAGAAGTGATGACTGTTATCGCAGAGATGGTGGGTGAATTGGAAAAAGAAGATCCGGAATTGGCTAAGGTTTTTCGAGAAGTGGCTGTGAAAGTAAAAATGTTGGCATCTGGCAGTGACCTTGTAGTGGAGCACCTGGATGTTGAAGACTCTCCTATTCCAGAGGAGCTGAACATAATATGTACATcttgcaaagcaatgatgcaaaatcttggcactctgtttagtgtgaagttcaagaccaaagcctcaaaggctgtgagtgaaattcttgtgagaaggttaatgagcgatatctctggtatggttcAACCTTCTCATTCGTTTAGTACCACTCCAAGCTTGATGAATGCATCTAGCCCATCTGACAGGATCCTTGATTCTGCGGCCACTGAGCTCATACAGACCAAAGTAGAATCTGAGGCATCACAAATAATTGATAACTTTGTTGAAGATGTCAAGGACATTGTGCAGTATGCTGAATTAGATCAGCCAACAAGCACCCAGAGAGATACCCAAGTGGGACACTGTAACGACAAAGCGGAAACCCTTCCATGCAGCTCGTAGACTCTGCGAGAGACTTCAGGCAAAGCTGGAGACATTGTTCCTCAGAATGGGTGGAGCTCCAGTCCAAGGGGAAGAACTTATGGAAAAAGCTGACTCCAGTGCTGTGCTTCTGGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAGAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACAGGACTTGGTTCTCTCCGTAAATGCCAAAGTGAGAACTCTCAaccattactgtctctctgtgattccAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTGGAATGCACATCATCTGTTGCAGAGGGTTCCTCTTACAACTCCCTTGAAGTCTGTGGCTTTTTGGACAGTGTCATGTCTTATCTAGAAGACATGCCTGTGTCTGGTTCTTCATGGTTGGAAGGATTAAGAGATACTCCAGCCTCAGTCATTGAGAAACTCTCCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106585521 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978499.1 True 1821 mRNA 0.47 3 80211184 80213484

Neighbor

gene id symbol gene type direction distance location
LOC118964651 LOC106581256 coding downstream 396 80208412 ~ 80210788 (-)
LOC118964650 LOC106581256 coding downstream 13265 80192385 ~ 80197919 (-)
LOC110524643 LOC106560384 coding downstream 44441 80075696 ~ 80166743 (-)
b4galt6 LOC106560385 coding downstream 194941 79988126 ~ 80016243 (-)
LOC110524638 LOC106560389 coding downstream 314445 79865177 ~ 79896739 (-)
LOC118964653 LOC106581256 coding upstream 9756 80223240 ~ 80233361 (-)
LOC118964655 LOC106581256 coding upstream 27515 80240999 ~ 80244648 (-)
LOC118964723 NA coding upstream 34209 80247693 ~ 80264560 (-)
LOC118964654 LOC106581256 coding upstream 42628 80256112 ~ 80259829 (-)
LOC110514042 LOC106581256 coding upstream 55123 80268607 ~ 80270301 (-)
G445202 NA non-coding downstream 9941 80200950 ~ 80201243 (-)
G445191 NA non-coding downstream 38563 80172237 ~ 80172621 (-)
G445189 NA non-coding downstream 39151 80171543 ~ 80172033 (-)
G445174 NA non-coding downstream 58452 80152398 ~ 80152732 (-)
G445173 NA non-coding downstream 61018 80149920 ~ 80150166 (-)
G445206 NA non-coding upstream 7154 80220638 ~ 80220893 (-)
G445217 NA non-coding upstream 29102 80242586 ~ 80242951 (-)
LOC118964724 NA non-coding upstream 91603 80282518 ~ 80308754 (-)
G445225 LOC106581256 non-coding upstream 98116 80311600 ~ 80311884 (-)
G445226 LOC106581256 non-coding upstream 98811 80312295 ~ 80312631 (-)
G445197 NA other downstream 34104 80176762 ~ 80177080 (-)
G445115 NA other downstream 223480 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 479648 79730987 ~ 79731536 (-)
LOC110524635 LOC106560345 other downstream 973723 79219153 ~ 79237461 (-)
G444001 NA other downstream 1245155 78964631 ~ 78966029 (-)
G445220 NA other upstream 32459 80245943 ~ 80261505 (-)
G446775 NA other upstream 1729801 81943285 ~ 81943611 (-)
G447220 NA other upstream 2177171 82390655 ~ 82391224 (-)
G447993 NA other upstream 3104029 83315161 ~ 83319715 (-)

Expression


Co-expression Network