LOC118964653 (LOC106581256)


Basic Information

Item Value
gene id LOC118964653
gene name LOC106581256
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80223240 ~ 80233361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978500.1
catattattacttattggaatgtctgtccttcaggtagcacagagggaggatggtgatcctcagagggaaggaaaggaagttGTTGAGGAAGAACCAGTGGCCTTGCCCAAAGAGGAGGCCAAGAAGGGAAGGAAGgcAAAAAGTAAGAGGAGTGGCAAGAAGTCAAGGAAGCTGGGCACTGACAATGATGCAGTCTCCAGGAATAAACACCTGGATAGAGGATCTGTAATTGAGCTCCTGGAGAAGAAAGCTGTTAAGGCTGTATTCGGCCCAGGCAACAAGGATGAGATGGAATACTCctacccaatcctcatctcattcctgcgcaatcttactgatgagcagtggcaagtgatctacaaaggactaaaaaaccctatgacgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGAcgacactgactcacccaagaggggtggcagtgcaagatcctttgctgcctttgatcaggaaagactggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGttcccagacctcagtgaaagtcctcctgggaatgacagaggacagaatcatcaaaagtgtccaggagcaactgtcTGATCATAATATCCTGTCCTCTTGCCCACCTGAGCTGACTGTTGGTCTTATGAAGGTGGTGGTCGAACAGCTTAATTCTGCCCTCTCTGCGACCATCAGCAGAGCCATTTCAGGGCGGTCATCCCCTATTTCTTCTGGTACCCAGGCCGCTGAACAaatggtcaacatggtccagaaatgttttgatgatcACAACACCCCAGAGGACCAGAGCTCTACCTCTGTATTAGAGTCATGCATTCCACCTGCAACAGAAGAAGTGATGACTGTTATCGCAGAGATGGTGGGTGAATTGGAAAAAGAAGATCCGGAATTGGCTAAGGTTTTTCGAGAAGTGGCTGTGAAAGTTAAAATGTTGGCATCTGGCAGTGACCTTGTAGTGGAGCACCTGGATGTTGAAGACTCTCCTGTTCCAGAGGAGCTGAACATAATATGTACATcttgcaaagcaatgatgcaaaatcttggcactctgtttagtgtgaagttcaagaccaaagcctcaaaggctgtgagtgaaattcttgtgagaaggttaatgagcgatatctctggtatggttcAACCTTCTCATTCGTTTAGTACCACTCCAAGCTTGATGAATGCATCTAGCCCATCTGACAGGATCCTTGATTCTGCGGCCACTGAGCTCATACAGACCAAAGTAGAATCTGAGGCATCACAAATAATTGATAACTTTGTTGAAGATGTCAAGGACATTGTGCAGTATGCTGAATTAGATCAGCCAACAAGCACCCAGAGAGATACCCAAGTGGGACACTGTACGACAAAGCGGAAACCCTTCCATGCAGCTCGTAGACTCTGCGAGAGACTTCAGGCAAAGCTGGAGACATTGTTCCTCAGAATGGGTGGAGCTCCAGTCCAAGGGGAAGAACTTATTAAAAAAGCTGACTCCAGTGCTGTGCTTCTGGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAGAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACGGGACTTGGTTCTCTCCGTAAATGCCAAAGTGAGAACTCTCAaccattactgtctctctgtgattccAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTGGAATGCACATCATCTGTTGCAGAGGGTTCCTCTTACAACTCCCTTGAAGTCTGTGGCTTTTTGGACAGTGTCATGTCTTATCTAGAAGACATGCCTGTGTCTGGTTCTTCATGGTTGGAAGGATTAAGAGATACTTCAGCCTCAGTCATTGAGAAACTCTCCAGTGAGGAGTTCCAGATGAACGCTACCAACGAAGTGCGAAAAATACTGATCAAATCAGTCAGTAGCTTTCCCAGCAAAGTCAGTTCCAGCCAGACAGATTCTCAGATGTTGCCAGCAAAATCAACAATTTCCTTAAGGCATACAGATATAACTGCTTTTGAAATCGTTGgatcaattacaaatgacatgaagagccttttcccacccacagagtcttctactactctatggcaggcagactctatgcttcaacagagtgatgagaaaacctcagagtacactgaggccacacccaaaggctcacagtctggtttggaagtatctgagaagaagatctggacaactgcaaagactatttaccacaatgtgaagacaaagatgaggaattattttacatggcaaaatcaagtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggttttaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatCCTCATCTGCCAGATCAAAGAAGTCAGAGTGTGAATTTtcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgcattccaccctgatctaacagctgcaatagcaagactggaggagctcatatctcagggtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGTCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTttctctgccatcagcatgacaacaagtgggacctccaatgctgcacAAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacgCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATAATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGG
>XM_036978501.1
catattattacttattggaatgtctgtccttcaggtagcacagagggaggatggtgatcctcagagggaaggaaaggaagttGTTGAGGAAGAACCAGTGGCCTTGCCCAAAGAGGAGGCCAAGAAGGGAAGGAAGgcAAAAAGTAAGAGGAGTGGCAAGAAGTCAAGGAAGCTGGGCACTGACAATGATGCAGTCTCCAGGAATAAACACCTGGATAGAGGATCTGTAATTGAGCTCCTGGAGAAGAAAGCTGTTAAGGCTGTATTCGGCCCAGGCAACAAGGATGAGATGGAATACTCctacccaatcctcatctcattcctgcgcaatcttactgatgagcagtggcaagtgatctacaaaggactaaaaaaccctatgacgaaggaacagcttgccaaattgtgcaagacaattgtaaccttcatcgcacagaccaccctgcagatcctgctgccaGCCCTGGCCCGCGTACTTGGGGTAAAGGACTTTGCTGACGAcgacactgactcacccaagaggggtggcagtgcaagatcctttgctgcctttgatcaggaaagactggagctcatccaggaagttaGATATCTGGCGAAGAAAATGTATAAGGGCGGCACAGGGGCTCAACATCTCAGGTCCCTAACACCCTCTTCTAAGAGttcccagacctcagtgaaagtcctcctgggaatgacagaggacagaatcatcaaaagtgtccaggagcaactgtcTGATCATAATATCCTGTCCTCTTGCCCACCTGAGCTGACTGTTGGTCTTATGAAGGTGGTGGTCGAACAGCTTAATTCTGCCCTCTCTGCGACCATCAGCAGAGCCATTTCAGGGCGGTCATCCCCTATTTCTTCTGGTACCCAGGCCGCTGAACAaatggtcaacatggtccagaaatgttttgatgatcACAACACCCCAGAGGACCAGAGCTCTACCTCTGTATTAGAGTCATGCATTCCACCTGCAACAGAAGAAGTGATGACTGTTATCGCAGAGATGGTGGGTGAATTGGAAAAAGAAGATCCGGAATTGGCTAAGGTTTTTCGAGAAGTGGCTGTGAAAGTTAAAATGTTGGCATCTGGCAGTGACCTTGTAGTGGAGCACCTGGATGTTGAAGACTCTCCTGTTCCAGAGGAGCTGAACATAATATGTACATcttgcaaagcaatgatgcaaaatcttggcactctgtttagtgtgaagttcaagaccaaagcctcaaaggctgtgagtgaaattcttgtgagaaggttaatgagcgatatctctggtatggttcAACCTTCTCATTCGTTTAGTACCACTCCAAGCTTGATGAATGCATCTAGCCCATCTGACAGGATCCTTGATTCTGCGGCCACTGAGCTCATACAGACCAAAGTAGAATCTGAGGCATCACAAATAATTGATAACTTTGTTGAAGATGTCAAGGACATTGTGCAGTATGCTGAATTAGATCAGCCAACAAGCACCCAGAGAGATACCCAAGTGGGACACTGTACGACAAAGCGGAAACCCTTCCATGCAGCTCGTAGACTCTGCGAGAGACTTCAGGCAAAGCTGGAGACATTGTTCCTCAGAATGGGTGGAGCTCCAGTCCAAGGGGAAGAACTTATTAAAAAAGCTGACTCCAGTGCTGTGCTTCTGGAGCATACTGACTCCAGTGATCTGCCTGTTTCAATCCTGAGCTTGCCTTCCCCATGTAGGAGTGAATCCCCTATATCAGAACGTAGTTCATCTTCTTTATCTGATGGATGTGATTCAACTGACTCTGTAGGAGAGAAAACACCAGAGCAACCTGAAACCAGTAAGAGTGAGGCAATACTGCAAGTGGTCAACTCAACGGGACTTGGTTCTCTCCGTAAATGCCAAAGTGAGAACTCTCAaccattactgtctctctgtgattccAACATGGTGCCCTGCACCAAAGAGGTCTTGTCCCAGATTGTGACCATGTATAGGTCAGAGGTGGCAGATTTGGAATGCACATCATCTGTTGCAGAGGGTTCCTCTTACAACTCCCTTGAAGTCTGTGGCTTTTTGGACAGTGTCATGTCTTATCTAGAAGACATGCCTGTGTCTGGTTCTTCATGGTTGGAAGGATTAAGAGATACTTCAGCCTCAGTCATTGAGAAACTCTCCAGTGAGGAGTTCCAGATGAACGCTACCAACGAAGTGCGAAAAATACTGATCAAATCAGTCAGTAGCTTTCCCAGCAAAGTCAGTTCCAGCCAGACAGATTCTCAGATGTTGCCAGCAAAATCAACAATTTCCTTAAGGCATACAGATATAACTGCTTTTGAAATCGTTGgatcaattacaaatgacatgaagagccttttcccacccacagagtcttctactactctatggcaggcagactctatgcttcaacagagtgatgagaaaacctcagagtacactgaggccacacccaaaggctcacagtctggtttggaagtatctgagaagaagatctggacaactgcaaagactatttaccacaatgtgaagacaaagatgaggaattattttacatggcaaaatcaagtcaaagcaacaacggctcaagccaaaaagaccctcagccatattctggttttaattcagaaagagctgtcaaaatctgaccaaaCGGTGACTGCGCTTTCACAAATAGAGAATGTGGTTGGAATGATGCTGAAGGATGTTGAAAGGGTAAGCAGTGAATGTGGTGAGGAACTGATCTATCAAGCGCCACAGCGTtcttcctcctcgttgtcatCCTCATCTGCCAGATCAAAGAAGTCAGAGTGTGAATTTtcactccctggcactcccatctcTTCTGATTTACCAGAGAGTATTACTCAGCCCATTGTGAGATGCTCAGTCATCGACATGGGCAAATCTACTAAGCCAAAAACATTGGTGTGTGATGCCAGGGAAAGCATGTCTGCAATAGTGGATACCATCATAAAGGAGGTACatccagaggaagaaggggaggttgcattccaccctgatctaacagctgcaatagcaagactggaggagctcatatctcagggtaggattggtgctctctcacgtgatcttactcaccaagtcaaccgcatcatttctgagagcaacttgacccctctggttctgacagtggcggctggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGTCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTttctctgccatcagcatgacaacaagtgggacctccaatgctgcacAAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATAATTTTCCACTTTTGA
>TU503806
ggaaagagtgcatccgatacagtccttactgagctgaagaggaatgacaagacggtggggaagcccacagcttacaagctggttcagctttttgcagaggagtctgtgaagcgcctcttgcttcctagccttgtgccctctacagcttcaatgagtttggctcagggaGTTAGTGTGCCGGCTAGCGTATCTGAAGATAGGATTTCATGTTCTTTTTCTACATCAGCATTTAGTGACACAGTCAGCCTGTTTACCAAAGTAATGGTAAGTCAGGTCATGGACTCTGTGGTTTCTGATGCACAAAGCAGAGGGTCATCTCCAACCGGAACTGTAACTGATATAGGCAGTCTACTGAGTGGTAAGTCCTACCCTCTGCCATCTttctctgccatcagcatgacaacaagtgggacctccaatgctgcacAAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGGGATACCATCAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGTTAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctg

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978500.1 False 4756 mRNA 0.47 9 80223240 80233361
XM_036978501.1 False 4567 mRNA 0.47 8 80223296 80233361
TU503806 True 727 TUCP 0.48 1 80225475 80226201

Neighbor

gene id symbol gene type direction distance location
LOC118964652 LOC106581256 coding downstream 9756 80211184 ~ 80213484 (-)
LOC118964651 LOC106581256 coding downstream 12452 80208412 ~ 80210788 (-)
LOC118964650 LOC106581256 coding downstream 25321 80192385 ~ 80197919 (-)
LOC110524643 LOC106560384 coding downstream 56497 80075696 ~ 80166743 (-)
b4galt6 LOC106560385 coding downstream 206997 79988126 ~ 80016243 (-)
LOC118964655 LOC106581256 coding upstream 7638 80240999 ~ 80244648 (-)
LOC118964723 NA coding upstream 14332 80247693 ~ 80264560 (-)
LOC118964654 LOC106581256 coding upstream 22751 80256112 ~ 80259829 (-)
LOC110514042 LOC106581256 coding upstream 35246 80268607 ~ 80270301 (-)
LOC118964724 NA coding upstream 49157 80282518 ~ 80308754 (-)
G445206 NA non-coding downstream 2347 80220638 ~ 80220893 (-)
G445202 NA non-coding downstream 21997 80200950 ~ 80201243 (-)
G445191 NA non-coding downstream 50619 80172237 ~ 80172621 (-)
G445189 NA non-coding downstream 51207 80171543 ~ 80172033 (-)
G445174 NA non-coding downstream 70508 80152398 ~ 80152732 (-)
G445217 NA non-coding upstream 9225 80242586 ~ 80242951 (-)
G445225 LOC106581256 non-coding upstream 78239 80311600 ~ 80311884 (-)
G445226 LOC106581256 non-coding upstream 78934 80312295 ~ 80312631 (-)
G445230 NA non-coding upstream 102389 80335750 ~ 80335953 (-)
G445197 NA other downstream 46160 80176762 ~ 80177080 (-)
G445115 NA other downstream 235536 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 491704 79730987 ~ 79731536 (-)
LOC110524635 LOC106560345 other downstream 985779 79219153 ~ 79237461 (-)
G444001 NA other downstream 1257211 78964631 ~ 78966029 (-)
G445220 NA other upstream 12582 80245943 ~ 80261505 (-)
G446775 NA other upstream 1709924 81943285 ~ 81943611 (-)
G447220 NA other upstream 2157294 82390655 ~ 82391224 (-)
G447993 NA other upstream 3084152 83315161 ~ 83319715 (-)
G448079 NA other upstream 3276992 83510353 ~ 83520273 (-)

Expression


Co-expression Network