LOC118964655 (LOC106581256)


Basic Information

Item Value
gene id LOC118964655
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80240999 ~ 80244648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978510.1
ttctccgccatcagcatgacaacaagtgggacctccaatgctgcacgAGGCTTTGAGGACAACATAGATGCTGAGGAAAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtGGTGAGACTTCTGTCAAAAATACAAACCCAAACTGATCTGTACCCAACTGACGTCACACGCACGTCACAAGACCTGATTCCAAAAGTTATAGCTGCcttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacgCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGACCGGGTGAAGGTTAAACGGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactaTTCCTGAGTTtcgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGGCAATTTGTCTCTTAtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagATGTTAAGTAATTAATGTTGATATTATCCAAAGGGTTTTTAACTGAAATGTTAAATGTTACATTTACGCTCATATTTGTAAATGGTATTTCAAAAATGGCGGAATCAAAAAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCCATTTTAATGAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATGCAAAAAAaactttctcaagcaataattttgctaggactgtctgggagtggtcagtgtggaggggaaattaaaactagctgttattggcactcTCATTGTCGTTGGTCTATAAACCAATTTACACATGGTGATGTCGCCATGGAAAGCCAAAATTCtggcccatgcaaacctgctgattagaaggtgctGTATAGATGTGAGAAACTCTCTTTTCATGGCACTTCAATATCGAAGTgaatttttcgtagcaggttaggaaactgaggttaaggttaggaaaagggttagtgaaaat

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978510.1 True 2275 mRNA 0.42 4 80240999 80244648

Neighbor

gene id symbol gene type direction distance location
LOC118964653 LOC106581256 coding downstream 7638 80223240 ~ 80233361 (-)
LOC118964652 LOC106581256 coding downstream 27515 80211184 ~ 80213484 (-)
LOC118964651 LOC106581256 coding downstream 30211 80208412 ~ 80210788 (-)
LOC118964650 LOC106581256 coding downstream 43080 80192385 ~ 80197919 (-)
LOC110524643 LOC106560384 coding downstream 74256 80075696 ~ 80166743 (-)
LOC118964723 NA coding upstream 3045 80247693 ~ 80264560 (-)
LOC118964654 LOC106581256 coding upstream 11464 80256112 ~ 80259829 (-)
LOC110514042 LOC106581256 coding upstream 23959 80268607 ~ 80270301 (-)
LOC118964724 NA coding upstream 37870 80282518 ~ 80308754 (-)
LOC118936654 LOC106581256 coding upstream 43439 80288087 ~ 80302020 (-)
G445206 NA non-coding downstream 20106 80220638 ~ 80220893 (-)
G445202 NA non-coding downstream 39756 80200950 ~ 80201243 (-)
G445191 NA non-coding downstream 68378 80172237 ~ 80172621 (-)
G445189 NA non-coding downstream 68966 80171543 ~ 80172033 (-)
G445174 NA non-coding downstream 88267 80152398 ~ 80152732 (-)
G445225 LOC106581256 non-coding upstream 66952 80311600 ~ 80311884 (-)
G445226 LOC106581256 non-coding upstream 67647 80312295 ~ 80312631 (-)
G445230 NA non-coding upstream 91102 80335750 ~ 80335953 (-)
G445244 NA non-coding upstream 142983 80387631 ~ 80388000 (-)
G445197 NA other downstream 63919 80176762 ~ 80177080 (-)
G445115 NA other downstream 253295 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 509463 79730987 ~ 79731536 (-)
LOC110524635 LOC106560345 other downstream 1003538 79219153 ~ 79237461 (-)
G445220 NA other upstream 1295 80245943 ~ 80261505 (-)
G446775 NA other upstream 1698637 81943285 ~ 81943611 (-)
G447220 NA other upstream 2146007 82390655 ~ 82391224 (-)
G447993 NA other upstream 3072865 83315161 ~ 83319715 (-)
G448079 NA other upstream 3265705 83510353 ~ 83520273 (-)

Expression


Co-expression Network