LOC118964656 (LOC106581256)


Basic Information

Item Value
gene id LOC118964656
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80288573 ~ 80290178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051870.1
acccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAACCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACATTTGGACTCCCAGAgggtcttccctccacctctcaacaGGAGAAGCCTCGCAAACGTCCCCTTCTAATCAGGATGTTTTCCACCATCTCCATAGGCCTATCCAAGCCATTCAAACGGTTTTCAAAGCAAGCTTAATACAACAATTTCCTTTAATACAGTAATATTTGCATTGAATTGATGGCCTTTGTCTTATTTTGTGTTGCCCTGTTAACACATTTGATTAGAAAATACATAgtatatttagtttagtttattatgcagtcatagtcacggtgtaggctaaacaaagtaatgttgtcctgaataatgtatagaacatgcacccccacccacacacacacaaacagtgtgattcattgaacacacacacatagtacttCAGTTATGTCCCACAACCAACATTCGACCAGATATCAATGATtcagtgtaaaatacatgtactgtaaaataaaccgtatttaatttacaaccaataaaataatacatgatgcaggacactcagttataagggaattaactggtttaacttctcaaacagaaacacacacatttccattttctgtggatcgcccatgtttacattttactgaatgccagtctgacctttgacctgtagATGGCAGTAAAGGTCTACTTTTGCTGCAGATCCTCTTCTAAAGCTCAAACCTCTCTGGACAAGGAGCCGAAACATTTGTCcctagtgagagagtgtgtgtgtgtgtgtgtgtgtgtggcaagaaAAGGGA

Function

NR:

description
uncharacterized protein LOC110514042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051870.1 True 1154 mRNA 0.42 3 80288573 80290178

Neighbor

gene id symbol gene type direction distance location
LOC110514042 LOC106581256 coding downstream 18272 80268607 ~ 80270301 (-)
LOC118964723 NA coding downstream 24013 80247693 ~ 80264560 (-)
LOC118964654 LOC106581256 coding downstream 28744 80256112 ~ 80259829 (-)
LOC118964655 LOC106581256 coding downstream 43925 80240999 ~ 80244648 (-)
LOC118964653 LOC106581256 coding downstream 55212 80223240 ~ 80233361 (-)
LOC118964725 NA coding upstream 23646 80313824 ~ 80380303 (-)
LOC118964659 LOC106581256 coding upstream 33284 80323462 ~ 80326940 (-)
LOC118964657 LOC106581256 coding upstream 48939 80339117 ~ 80340580 (-)
LOC118964658 LOC106581256 coding upstream 110853 80401031 ~ 80403359 (-)
LOC118964726 NA coding upstream 114625 80404803 ~ 80412432 (-)
G445217 NA non-coding downstream 45622 80242586 ~ 80242951 (-)
G445206 NA non-coding downstream 67680 80220638 ~ 80220893 (-)
G445202 NA non-coding downstream 87330 80200950 ~ 80201243 (-)
G445191 NA non-coding downstream 115952 80172237 ~ 80172621 (-)
G445189 NA non-coding downstream 116540 80171543 ~ 80172033 (-)
LOC118964724 NA non-coding upstream 14909 80282518 ~ 80308754 (-)
G445225 LOC106581256 non-coding upstream 21422 80311600 ~ 80311884 (-)
G445226 LOC106581256 non-coding upstream 22117 80312295 ~ 80312631 (-)
G445230 NA non-coding upstream 45572 80335750 ~ 80335953 (-)
G445244 NA non-coding upstream 97453 80387631 ~ 80388000 (-)
G445220 NA other downstream 27068 80245943 ~ 80261505 (-)
G445197 NA other downstream 111493 80176762 ~ 80177080 (-)
G445115 NA other downstream 300869 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 557037 79730987 ~ 79731536 (-)
G446775 NA other upstream 1653107 81943285 ~ 81943611 (-)
G447220 NA other upstream 2100477 82390655 ~ 82391224 (-)
G447993 NA other upstream 3027335 83315161 ~ 83319715 (-)
G448079 NA other upstream 3220175 83510353 ~ 83520273 (-)
G448411 NA other upstream 3581424 83871602 ~ 83873308 (-)

Expression


Co-expression Network