LOC118964659 (LOC106581256)


Basic Information

Item Value
gene id LOC118964659
gene name LOC106581256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 80323462 ~ 80326940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036978513.1
cgccatcagcatgacaacaagtgggacctccaatgctgcacAAGGCTTTGAGGCCAACATAGATGCTGAGGAAAGTTGTTTCGGTGTACCTCAGAGCATTGTTTGTGATCAGAATTCAACCAGCCCGGATGTTGCCTCGCTTTCAACCCCATCCACTGACAACTTAGTCGGTGATGATGACTTCACcggcctcatcagcatgttagtggtgagacttctgtcaaaaatccaaacccaaactgatctgtacccaactgacgtcacacgcacgtcacaagacctgattccaaaagttatagctgccttctgtgcatggtcaggctgctctgagacccaagcttatcccaagaacctgaagagtcacaaagtatacagcaccgtctacaaacatctgttgaaggagtttggctcagagaaaatactccaactggccgtgtcgactcaggactcCACTTTCAATAGGATTCTTGTGAAGTCATTGAGCAAGGAGCTTCTCCACAGTTGTAACGAGGCATCAAGAGCAGCCTCAAGAACATCTTTCGAAGCCACCAGGCCAGAAGCTCTTCTCATGGCTGAAGATGTGAAGGCTACCAGAGGGAAGCTGTCTTTCCTACAAAGGCTTGCCAGACTGAAATTCAACTTAAAGccattcatgatgggaaacaagaagaattcccgccattctgaatccaaagaccagactactgctgaagagatcatgtTGGCACATCCTGCCACGTTTGGACTCCCAGAgggtcttccctccacctctcaacaggagaagcctcgcaaacgtccccttctaatcaggatgttttccaccatctccataggcctatccaagccattcaaacgCTTTTACCTTCGACATCAACAAGCGACGCACGGGCTGGTCCTGCAGACTCCCACGCCCATGGcccaggagaaggctgggggCCACCTGCTCACTCACGTCCCAGCCATCTCCTTTGAGACCGACTCTACTGTGGAGTGCACCTCCAAGAGGACTCCGGAAGAGAGGGAACGGGTGAAGGTTAAACTGGCCAACATGGCCTTGATGGGAAGGATCAAAAGTCTTGGCTGTGAAATGCCCATTATGTGTGATTATCGAATTGATCATTTTCCACTTTTGAAACAACAATGGGAAAGACAGGGTTTATAGCAAAGGTTGCTCAGATTGGGCTTTTGGAAAAATTGGGAGAATGAAAGTGCACTCCTGATTCAGAGAGAAAGATCCAGCTTAATCATCCATACCATTgtttaaattacaataaaaaaacattcaaactgttcctgagtttcgaaagacagagaaaggaaaacatCATTATCTTCAGTCTGTTCACACCTGTTCACACAAGTCCTACTGTCCACAATCTCAGGGTTCTTCAATACAAACACACCTGTTTCAGAAAACCTGATCACTTTCACATTCGAACAATGTTTGTAGGATACTTTTCAATAACTCAATAAATGTAAGTGTTGAAACCATACATAGCTGGTAACTTGAGCTCGGCAGAGTAGTTTTGACCTGTGTCCAGATGCAGTCATTTATGTTGTCTAAAGGCAATTTGTCTCTTTtaacaatgttatttttctgaataatctaatttaattgactggtaggtagtcactaactatttgtagcatgtgttcctctgtttattgatatttacatggtgtgtatgtgttaagATGTTAAGTAATTAATGTTGATATTATCCAAAGGGTTTTTAACTGAAAAGTTAAATGTATTTCAAAAATGGCAGAATCAAACAGTATTGGAATAGTGACTTGTATTTTGCATCTAGAAGTGTAAGAATTTTAGAAGAATGCTATTTCATCAGTCAAATGTTGCACTGTTTGATAAGACAGGGTAAAGAAAACCTCCATTTTAATGAGTTTAGTTGTGAGTTTGACATTTTACCACAAGAAGTCACTATAATACTATACGTTATCAAACAGGGTTGTGCTGAAAATCAAATGAACCACAGCCAAATTAATTATTTGCAACTAAGAGTAAGATTAAAAAAGACATGTATAACTTACTTTcttgataaaatacattctaaaatgTCAA

Function

NR:

description
uncharacterized protein LOC110507890

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036978513.1 True 2080 mRNA 0.42 4 80323462 80326940

Neighbor

gene id symbol gene type direction distance location
LOC118964724 NA coding downstream 14708 80282518 ~ 80308754 (-)
LOC118936654 LOC106581256 coding downstream 21442 80288087 ~ 80302020 (-)
LOC118964656 LOC106581256 coding downstream 33284 80288573 ~ 80290178 (-)
LOC110514042 LOC106581256 coding downstream 53161 80268607 ~ 80270301 (-)
LOC118964723 NA coding downstream 58902 80247693 ~ 80264560 (-)
LOC118964657 LOC106581256 coding upstream 12177 80339117 ~ 80340580 (-)
LOC118964658 LOC106581256 coding upstream 74091 80401031 ~ 80403359 (-)
LOC118964726 NA coding upstream 77863 80404803 ~ 80412432 (-)
LOC118964727 LOC106581256 coding upstream 88003 80414943 ~ 80418042 (-)
LOC118964666 NA coding upstream 94147 80421087 ~ 80438415 (-)
G445226 LOC106581256 non-coding downstream 10831 80312295 ~ 80312631 (-)
G445225 LOC106581256 non-coding downstream 11578 80311600 ~ 80311884 (-)
G445217 NA non-coding downstream 80511 80242586 ~ 80242951 (-)
G445206 NA non-coding downstream 102569 80220638 ~ 80220893 (-)
G445230 NA non-coding upstream 8810 80335750 ~ 80335953 (-)
G445244 NA non-coding upstream 60691 80387631 ~ 80388000 (-)
G445245 NA non-coding upstream 61707 80388647 ~ 80388868 (-)
G445247 NA non-coding upstream 66532 80393472 ~ 80393693 (-)
G445248 NA non-coding upstream 67986 80394926 ~ 80395331 (-)
G445220 NA other downstream 61957 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 97261 80223240 ~ 80233361 (-)
G445197 NA other downstream 146382 80176762 ~ 80177080 (-)
G445115 NA other downstream 335758 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 591926 79730987 ~ 79731536 (-)
G446775 NA other upstream 1616345 81943285 ~ 81943611 (-)
G447220 NA other upstream 2063715 82390655 ~ 82391224 (-)
G447993 NA other upstream 2990573 83315161 ~ 83319715 (-)
G448079 NA other upstream 3183413 83510353 ~ 83520273 (-)
G448411 NA other upstream 3544662 83871602 ~ 83873308 (-)

Expression


Co-expression Network