LOC110524659 (LOC106560369)


Basic Information

Item Value
gene id LOC110524659
gene name LOC106560369
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81237982 ~ 81240184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604504.2
CAGAGTCAAAAAAAAAGTGTCTCTGTAGTGACGGATGCTTGAGCCGTAGTTTTCCCAATGTTCGACACAGTAGACTGTGCGCAGCCTTCACTCCAGTCATCCTGGCGAGCCGTGGCTTAGGCTAAACATACTTCCCCAAACTCCCTTTGTAACACACAGAAAATAAAGGAAAGGAGGCTGAGGAGGAAACTGGAGCTACCCATCTCCGTGCTGCAGAAGCTTTTGGGAGAGTTCTTTATTATTTAAACTTTACGGGACGAAGGCGAGGAGGAGATAATGCAGGCGCGCTACTCCGTCTCCAGCCCCAACTCTCTGGGCGTCGTGCCTTACATTAGCAGTGACCAGAGCTACTACCGGGCAGCGGCGGGTGGAGGGTACACCGGGATGCCAGCTCCCATGAGTATGTACTCTCACGCAGCCCAAGACCAGTATCAGGCCAGCATGGCGCGTGCGTACGGACCGTACACCCCGCAACACCAGCCCAAGGACCTGGTCAAACCTCCGTACAGCTACATCGCCCTTATCACCATGGCGATACAGAACTCACCGGACAAGAAGGTGACCCTAAACGGGATTTATCAGTTTATCATGGAGAGGTTCCCGTTCTACCGAGACAACAAGCAGGGCTGGCAGAACAGCATCCGCCACAACCTGTCCCTCAACGAGTGCTTTGTCAAAGTGGCCCGGGACGATAAGAAGCCCGGCAAAGGCAGCTATTGGACTCTGGACCCGGACTCCTATAACATGTTCGAGAACGGCAGCTTCCTGAGGCGTCGCAGACGGTTCAAGAAGAGTAATGTTCAAAAGGACAAGGATGACAGGCAAGGCAGGGACCTGTCAGGGAGAGGAGCACCGGATATGGAGAACGAGCAGCCCGTGCAGGGCTCACAGCCCGTGCGCATCCAGGACATAAAGACTGAGAACGGGACCTCTACTCCACCACAGGCCGAGTCCCCCAGCCTGCCTGTGCCCAAGATAGAGAGTcctggcagcagcagtagtatgtcCACCGGTAGCCCTCACAGTGTGCCCTCTGCCCGGTCCCTCTCCATGGAGGGCCCCGAGCATCACCACCACGCACAGGCCGCGGCGCAAGGCTTCAGTGTGGACAACATCATGACCTCAGTCCGGGGGTCGCCTCAGGGCACCACGGAGCCTCTTATCGCATCTTCTAGGACAGGTATaaccccctctctatctcttaaCTATTCCCCCAACCAGACGTCTGCTTACAACTCACCAAACTGCAACCAGAACTCAATATCTACAAACTCTAACGCGACGTACCATTGCAACATGCAAGCCATGAGCTTGTACGCCGGGGAACGAGGAGGCCACCTTGCGCCCTCTACCACCGTGGACGAGACTCTGCCCGATTACTCCATCACCACTACGGCCACATCCCCGCTCGGGCATGGCAACCTGAGCGCGGGACAGGACAGTGGTCACCACGCGAACCAGGGCCGACTTGCGTCCTGGTACGGAGACCTGGGACACCTGGGCACAAGCTACCCGGCACAGCAACAGAACTTCCACTCGATGCGAGAGATGTTCGAGTCTCAACGGATCGGTTTGAATAGCTCTCCGGTTAACGGAAGTAATAGCTGTCAGATGGCCTTCCCCTCCGGTCAATCCATCTACCGTACCTCCGGAGCTTTCGTTTATGACTGCGGCAAGTTctgaaaataacaaaaacaaaaacgtttttttaaacGAATaactttaatatatatatatttccttctTTTTGTACTTTAACCTCCCTCATTCCGGTCCTTTATTCATCCCCAAATGGACTAAACAGAATGAGAGTGGTGAGATTTGTTCTGGTGTGTATGAAAGACAGAGGCGCGTGTTACAACATCGAATAACACGTAAGTTTTTATCTCTCTCACTTTGGGAACTTTGTTTTTAAAGAGTGTTGCTTTAACATCCAACATGTTATTAACTTGTTATTCACTGTAAATTGCATATAGTAATTTATTATAGAAAGTAAGGGAGTATAGTTGGATGTTGTGGACCAACCACCAAAAAAGTGTTTCCAAATTGAGGTGCCTTAAATTGTGCTACATATTGTTATTTTATGAAATAGGAGGGGGACTTGTATACCGACGTattctatatatttttgttcCATATTTGTTGAAATTATTCTGAAGGCATTGCTTTGTTTGTCTAATAAATTGACATTCTATTTGATTTA

Function

NR:

description
forkhead box C1-A-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09396 FOXC; forkhead box protein C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604504.2 True 2203 mRNA 0.50 1 81237982 81240184

Neighbor

gene id symbol gene type direction distance location
serpinb1 ileu coding downstream 376617 80839898 ~ 80861365 (-)
bmb LOC106560378 coding downstream 419609 80809362 ~ 80818373 (-)
LOC118964670 NA coding downstream 450187 80781794 ~ 80787795 (-)
mcm3l LOC106560381 coding downstream 647862 80573427 ~ 80590120 (-)
LOC118964669 LOC106581256 coding downstream 692309 80543930 ~ 80545673 (-)
LOC110524660 LOC106560371 coding upstream 25273 81265457 ~ 81271056 (-)
LOC110524661 LOC106560372 coding upstream 37082 81277266 ~ 81279193 (-)
LOC110524663 LOC106560370 coding upstream 340134 81580318 ~ 81589232 (-)
LOC110524664 LOC106560367 coding upstream 394179 81634363 ~ 81637591 (-)
LOC110524665 slc22a23 coding upstream 399278 81639462 ~ 81767595 (-)
G445985 NA non-coding downstream 108411 81129059 ~ 81129571 (-)
G445963 NA non-coding downstream 146341 81090803 ~ 81091641 (-)
G445927 NA non-coding downstream 205599 81005174 ~ 81032383 (-)
G445622 NA non-coding downstream 375139 80862602 ~ 80862843 (-)
G445616 NA non-coding downstream 398560 80836661 ~ 80839422 (-)
G446059 NA non-coding upstream 23799 81263983 ~ 81264219 (-)
G446070 NA non-coding upstream 41605 81281789 ~ 81282170 (-)
G446074 NA non-coding upstream 48366 81288550 ~ 81288822 (-)
G446082 NA non-coding upstream 57853 81298037 ~ 81298246 (-)
G446086 NA non-coding upstream 66865 81307049 ~ 81307389 (-)
G445220 NA other downstream 976477 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 1011781 80223240 ~ 80233361 (-)
G445197 NA other downstream 1060902 80176762 ~ 80177080 (-)
G445115 NA other downstream 1250278 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 1506446 79730987 ~ 79731536 (-)
G446775 NA other upstream 703101 81943285 ~ 81943611 (-)
G447220 NA other upstream 1150471 82390655 ~ 82391224 (-)
G447993 NA other upstream 2077329 83315161 ~ 83319715 (-)
G448079 NA other upstream 2270169 83510353 ~ 83520273 (-)
G448411 NA other upstream 2631418 83871602 ~ 83873308 (-)

Expression


Co-expression Network