LOC110524660 (LOC106560371)


Basic Information

Item Value
gene id LOC110524660
gene name LOC106560371
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 81265457 ~ 81271056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604505.2
AAAGAAAGATTTACGAAATGATAGGTGGTCGCGTTTTGTTTGGCTGAGCGGCCTCGCGCACTAAATTGAGGAGTCTTCGCGTTTCCTCCCCTTTAGGGATTAAGGCGGGCGATGGCCACCCGGTGCGCCGCAGAGCTGCACTCACCGCCACGGTGATACCGAACCGCACCGGAGCCTCTGTGTCGAACTGAACCTCCGCAAAACGCCGCATTATAGCGAGCGCTCCAGCCCTCACTGGATACTctgctctcatctctctcccacaTTCTGACACTGCGAACTCGCTGCAGATTTTCTGCGTAATAGGAGAGCCCAACAGAACGGAAGATAGTTTTTCCTCTCCAAGCCCTTGTTTGTTGAATTCCGAAGACCAACGGCGTGTGTGATTTGTAGAGGACTTTGAGTAGAAGAGACATTACTTGCTATCACCTTATTTGAATCATATACGTCCCTTTTTCTTTCTCTAGATCTCTTGCTCAATCtcactctcctctttcccccatctctctttctcatcttcccccatctctctttctctcctcacgTTACTGCTCAGCTACGCAGTGCGTCAGCGGAGCAGAGATGACGACCGAGACGTCTCAGCAGCAGCTGGACCCACCGCCTCCCCTGAGGTCCAGCCCGGCCTCCGGTGTCCTGCACCCCGCCATGATAAGCCCACAGGCTCCCATGGACAGTTCCTCGACCGGGGCCAAAGGCAAGAAGGCGAACTCCGGACTGAGGCGACCAGAGAAGCCTCCCTACTCCTACATTGCGCTCATCGTCATGGCGATACAGAGCTCACCCACCAAGAGGCTGACTCTAAGTGAGATCTATCAGTTTCTCCAGGCCCGGTTCCCCTTCTTCAGAGGATCCTACCAGGGCTGGAAGAACTCCGTCCGGCACAACCTTTCCCTAAACGAGTGCTTTATCAAGCTGCCAAAAGGGCTGGGCAGGCCAGGCAAAGGCCACTACTGGACCATCGACCCGGCCAGCGAGTTCATGTTCGAAGAGGGCTCGTTCCGCCGCAGACCCAGGGGCTTCCGGAGAAAATGCCAAGCCCTAAAGCCCATGTACCGGATGATGAACGGGATAGGCTTCGGTACGTCCATTTTGCCGCAGAGCTTTGAGTTTCAGGCGCCCGGGTCTCTTGCGTGTCATAGCAACAGTTACAACTTGGACATGATGACCAACTCCATGGCAGGTGGCTACGAAGGGCTTAGTGGCCACCACGTACCTCACATGTCCCCGAGCCCCGGGTCCACGTACATGGCCAGCTGTCCGGTAACGTCCAACGGGGATTACGGTGGACCGGACAGTAGCAGCAGCCCTGTGCCCTCGTCCCCGGCTATGGCCAGTGCGTTGGACGGTCACGGTCATTCTCCATATGCCAGTACCTCCGGACACTGGGCGTCTCCCGGCGGCTCCCCGTACATCAAGCAGCAGCCTCTGGCTTCCAGCAGCCCGGCGTCCTCTGGGCTACACTCTGGTATGTCCCCCTACTCCCTGGAGCAGAGCTACCTCCACCAGAACGCCAGGGACACGGCCGATATCTCAGtggggATCCCTCGCTACCAAAGCCACTCCTCACCCGTGGTCGACAGGAAGGATTTTGTCCTGAATTTTAACGGCATCTCCTCGTTCCATCCCTCAGCCAGTGGATcgtactatcatcatcatcaccatcaccaccatcaccaaagCCTTTGTCAAGACGTCAAACCGTGTGTGATGTGAGCAGGAAATGTAGTGCGCGTAAAGGCCCAAACTGTGCTCCGGAGATGAGAATGAACACAAAATCGAGCAATTTAAACTGATTTTATACATGTCTGGCGACAGTTTAAACCCAAATAAATGGCCTGTCATCTTACTGATGAGATCGAACAATGGGGACAGTAGCCTATTTTTGAGAGTCTGGAAAAACTTCTCGAGTCAGGATATATTTTCGTCGTCTTGATTGGTCTAAATGAAGGACAGTATATTATGCACTAACTGTTTCTGAAGTGAaggacccactgggcacagatgtcagttcaacctctaatttttatttacatttgtttgaGTTGTCAACTATTGTGAACTCAACGGGAAATCCCCCCAAAAATCACCATGTCATTGGGTTCAGGTTAAAAGTTAGGGGGGAAAAAGAcgaaacccactgggcacagacgtcaattcaacgtctattccatgttggttcaacttaatttcattgaaatgatgtggaaacaacgttgattcaaccagtgcgtGCTCAGTGGGAATgcccttatgttgatgactttttgccaATCCAATGGGGTTTCCACGTTGATTCGacgtcatcacatagatttttttgttgttggttgaaatgatgtggaaacaacgttcaacacgtttttgcccagtgggaaagCACAAACGCTTATGACAATGAAACCACTTTGCCTTATTCTGTTCTCTATTGGCCAACGTTTTCTTCTTCAAAATAAGTTTCAAAACGATTATAATTATGTGTTTGCTGTCATTACTTGTGCAAACACATAGCCTATATTTTATGTAACTAGGCCTCTGTTCTGATCTATAAAagtacatgcacatacacaaagCTTTTTATAACAAAAATTGCAACAAATTTGCACTTATTGTATACCCTTTTTGAGATTAGCTTAATTTTCCTCGTTGTAAAGTGTTTCAATAAAGCTGATATATTTTCCGCTA

Function

NR:

description
forkhead box protein F2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604505.2 True 2703 mRNA 0.50 2 81265457 81271056

Neighbor

gene id symbol gene type direction distance location
LOC110524659 LOC106560369 coding downstream 25273 81237982 ~ 81240184 (-)
serpinb1 ileu coding downstream 404092 80839898 ~ 80861365 (-)
bmb LOC106560378 coding downstream 447084 80809362 ~ 80818373 (-)
LOC118964670 NA coding downstream 477662 80781794 ~ 80787795 (-)
mcm3l LOC106560381 coding downstream 675337 80573427 ~ 80590120 (-)
LOC110524661 LOC106560372 coding upstream 6210 81277266 ~ 81279193 (-)
LOC110524663 LOC106560370 coding upstream 309262 81580318 ~ 81589232 (-)
LOC110524664 LOC106560367 coding upstream 363307 81634363 ~ 81637591 (-)
LOC110524665 slc22a23 coding upstream 368406 81639462 ~ 81767595 (-)
LOC110524669 LOC106584070 coding upstream 572463 81843519 ~ 81889913 (-)
G446059 NA non-coding downstream 1238 81263983 ~ 81264219 (-)
G446011 NA non-coding downstream 4525 81176684 ~ 81260932 (-)
G445985 NA non-coding downstream 135886 81129059 ~ 81129571 (-)
G445963 NA non-coding downstream 173816 81090803 ~ 81091641 (-)
G445927 NA non-coding downstream 233074 81005174 ~ 81032383 (-)
G446070 NA non-coding upstream 10733 81281789 ~ 81282170 (-)
G446074 NA non-coding upstream 17494 81288550 ~ 81288822 (-)
G446082 NA non-coding upstream 26981 81298037 ~ 81298246 (-)
G446086 NA non-coding upstream 35993 81307049 ~ 81307389 (-)
G446097 NA non-coding upstream 50675 81321731 ~ 81322015 (-)
G445220 NA other downstream 1003952 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 1039256 80223240 ~ 80233361 (-)
G445197 NA other downstream 1088377 80176762 ~ 80177080 (-)
G445115 NA other downstream 1277753 79982461 ~ 79987704 (-)
G444691 LOC106605670 other downstream 1533921 79730987 ~ 79731536 (-)
G446775 NA other upstream 672229 81943285 ~ 81943611 (-)
G447220 NA other upstream 1119599 82390655 ~ 82391224 (-)
G447993 NA other upstream 2046457 83315161 ~ 83319715 (-)
G448079 NA other upstream 2239297 83510353 ~ 83520273 (-)
G448411 NA other upstream 2600546 83871602 ~ 83873308 (-)

Expression


Co-expression Network